Wall clock time and date at job start Tue Mar 31 2020 20:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38774 * 119.90022 * 2 1 4 4 N 1.31774 * 120.12204 * 179.97438 * 3 2 1 5 5 C 1.33028 * 119.92851 * 0.02562 * 4 3 2 6 6 C 1.48146 * 120.09661 * 180.02562 * 5 4 3 7 7 O 1.21523 * 120.00021 * 180.02562 * 6 5 4 8 8 N 1.34777 * 120.00016 * 359.72526 * 6 5 4 9 9 C 1.46504 * 119.99858 * 180.27150 * 8 6 5 10 10 C 1.53004 * 109.46929 * 180.02562 * 9 8 6 11 11 C 1.53000 * 109.46988 * 180.02562 * 10 9 8 12 12 N 1.46499 * 109.46775 * 179.97438 * 11 10 9 13 13 C 1.34779 * 119.99367 * 179.97438 * 12 11 10 14 14 O 1.21277 * 120.00618 * 0.02562 * 13 12 11 15 15 C 1.50701 * 119.99574 * 179.97438 * 13 12 11 16 16 S 1.81000 * 109.47301 * 179.97438 * 15 13 12 17 17 C 1.76195 * 100.00246 * 180.02562 * 16 15 13 18 18 H 1.07997 * 119.99904 * 359.97438 * 17 16 15 19 19 C 1.38801 * 119.99974 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00070 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99996 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46954 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.46951 * 119.99896 * 21 19 17 24 24 H 1.48499 * 109.46905 * 239.99726 * 21 19 17 25 25 C 1.39403 * 119.80642 * 0.27989 * 5 4 3 26 26 N 1.32100 * 119.90912 * 179.97438 * 2 1 3 27 27 H 1.09008 * 109.47159 * 90.00399 * 1 2 3 28 28 H 1.09003 * 109.47014 * 209.99547 * 1 2 3 29 29 H 1.08997 * 109.47440 * 330.00400 * 1 2 3 30 30 H 1.08004 * 119.94317 * 359.97438 * 3 2 1 31 31 H 0.97001 * 119.99727 * 0.28049 * 8 6 5 32 32 H 1.08998 * 109.47306 * 300.00567 * 9 8 6 33 33 H 1.08997 * 109.46860 * 60.00391 * 9 8 6 34 34 H 1.09007 * 109.46621 * 300.00188 * 10 9 8 35 35 H 1.08997 * 109.46991 * 59.99937 * 10 9 8 36 36 H 1.08998 * 109.46983 * 299.99930 * 11 10 9 37 37 H 1.08997 * 109.47123 * 59.99717 * 11 10 9 38 38 H 0.96994 * 120.00528 * 359.97438 * 12 11 10 39 39 H 1.08998 * 109.47477 * 300.00195 * 15 13 12 40 40 H 1.09002 * 109.47412 * 59.99936 * 15 13 12 41 41 H 0.97000 * 120.00535 * 179.97438 * 20 19 17 42 42 H 1.08002 * 120.05978 * 179.70746 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1988 1.2030 0.0000 4 7 3.5165 1.2081 0.0005 5 6 4.1847 0.0578 0.0005 6 6 5.6661 0.0592 0.0017 7 8 6.2747 -0.9926 0.0012 8 7 6.3389 1.2270 -0.0029 9 6 7.8039 1.2283 -0.0078 10 6 8.3126 2.6713 -0.0117 11 6 9.8426 2.6727 -0.0174 12 7 10.3296 4.0544 -0.0218 13 6 11.6544 4.3018 -0.0267 14 8 12.4434 3.3808 -0.0280 15 6 12.1554 5.7231 -0.0317 16 16 13.9654 5.7249 -0.0369 17 6 14.2698 7.4603 -0.0414 18 1 13.4418 8.1537 -0.0410 19 6 15.5736 7.9362 -0.0466 20 7 16.5827 7.0911 -0.0487 21 14 15.8963 9.7762 -0.0522 22 1 14.6028 10.5056 -0.0506 23 1 16.6751 10.1458 1.1570 24 1 16.6676 10.1398 -1.2680 25 6 3.4867 -1.1489 -0.0059 26 7 2.1657 -1.1451 0.0005 27 1 -0.3634 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5137 30 1 1.6562 2.1369 -0.0004 31 1 5.8531 2.0666 -0.0028 32 1 8.1707 0.7165 0.8819 33 1 8.1647 0.7131 -0.8980 34 1 7.9457 3.1834 -0.9013 35 1 7.9517 3.1862 0.8787 36 1 10.2097 2.1605 0.8719 37 1 10.2030 2.1580 -0.9080 38 1 9.6986 4.7911 -0.0211 39 1 11.7887 6.2345 -0.9217 40 1 11.7945 6.2388 0.8582 41 1 17.4939 7.4236 -0.0527 42 1 4.0251 -2.0852 -0.0107 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001720217768.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:05 Heat of formation + Delta-G solvation = -66.664140 kcal Electronic energy + Delta-G solvation = -24120.725219 eV Core-core repulsion = 20225.563098 eV Total energy + Delta-G solvation = -3895.162121 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.41117 -40.68993 -40.43498 -37.30444 -35.94490 -35.41989 -34.57732 -33.91206 -32.70370 -30.66250 -29.46410 -27.69505 -26.53338 -25.66059 -24.44262 -22.86301 -22.01939 -21.71300 -19.86075 -19.33695 -18.78171 -17.71911 -17.45516 -17.21784 -17.00833 -16.87450 -16.67614 -16.64654 -16.10021 -16.05246 -15.61771 -15.38952 -14.88000 -14.67222 -14.36408 -14.15887 -13.76446 -13.65915 -13.35669 -13.27565 -13.21497 -13.14856 -12.90769 -12.82134 -12.63510 -12.57151 -12.31368 -12.10604 -11.70908 -11.61303 -11.15217 -10.97024 -10.44686 -10.27542 -10.25567 -10.15522 -10.10396 -8.65957 -8.34015 -6.12072 -0.76755 -0.08254 1.27750 1.42244 1.47792 1.52388 1.58475 1.62606 1.81597 2.27452 2.34692 2.61103 2.84745 2.99334 3.00491 3.27966 3.33219 3.66791 3.85512 3.90916 3.95498 3.95934 4.04357 4.14430 4.32122 4.44298 4.50574 4.53183 4.56442 4.75098 4.76359 4.83249 5.02947 5.07002 5.07815 5.25215 5.33540 5.42906 5.43866 5.96103 6.20899 6.29291 6.52747 6.57693 6.96767 7.07571 7.26689 8.75541 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.033791 B = 0.001338 C = 0.001289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.419740 B =20926.253233 C =21718.305678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.106 3.894 3 C 0.058 3.942 4 N -0.416 5.416 5 C 0.000 4.000 6 C 0.573 3.427 7 O -0.564 6.564 8 N -0.695 5.695 9 C 0.121 3.879 10 C -0.123 4.123 11 C 0.122 3.878 12 N -0.711 5.711 13 C 0.532 3.468 14 O -0.568 6.568 15 C -0.129 4.129 16 S -0.156 6.156 17 C -0.545 4.545 18 H 0.084 0.916 19 C 0.013 3.987 20 N -0.912 5.912 21 Si 0.999 3.001 22 H -0.255 1.255 23 H -0.275 1.275 24 H -0.275 1.275 25 C 0.107 3.893 26 N -0.466 5.466 27 H 0.102 0.898 28 H 0.079 0.921 29 H 0.114 0.886 30 H 0.219 0.781 31 H 0.421 0.579 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.419 0.581 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.271 0.729 42 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -38.706 -8.533 0.080 39.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.037 4.037 3 C -0.107 4.107 4 N -0.133 5.133 5 C -0.139 4.139 6 C 0.358 3.642 7 O -0.442 6.442 8 N -0.347 5.347 9 C -0.003 4.003 10 C -0.161 4.161 11 C -0.003 4.003 12 N -0.365 5.365 13 C 0.317 3.683 14 O -0.446 6.446 15 C -0.280 4.280 16 S 0.071 5.929 17 C -0.693 4.693 18 H 0.102 0.898 19 C -0.191 4.191 20 N -0.549 5.549 21 Si 0.821 3.179 22 H -0.179 1.179 23 H -0.200 1.200 24 H -0.200 1.200 25 C -0.052 4.052 26 N -0.181 5.181 27 H 0.120 0.880 28 H 0.098 0.902 29 H 0.132 0.868 30 H 0.235 0.765 31 H 0.259 0.741 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.257 0.743 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.080 0.920 42 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -36.708 -10.859 0.084 38.280 hybrid contribution -0.387 2.187 -0.012 2.221 sum -37.095 -8.672 0.071 38.095 Atomic orbital electron populations 1.20958 0.84426 1.05730 1.05136 1.23402 1.00679 0.89201 0.90382 1.24409 0.89352 1.01043 0.95875 1.68306 1.10482 1.27819 1.06673 1.21875 0.94986 0.91801 1.05208 1.17845 0.85704 0.84175 0.76520 1.90816 1.69283 1.32507 1.51633 1.45687 1.07505 1.08812 1.72678 1.21284 0.78541 0.97603 1.02890 1.21799 0.92683 0.95891 1.05699 1.21213 0.94342 0.82560 1.02157 1.45657 1.05603 1.09717 1.75550 1.20094 0.82983 0.90057 0.75137 1.90702 1.56590 1.47149 1.50157 1.23373 1.00839 0.96845 1.06971 1.85625 0.99261 1.10952 1.97057 1.23245 0.95803 0.91526 1.58711 0.89777 1.26128 0.94683 1.04585 0.93739 1.70190 0.99590 1.36984 1.48132 0.84901 0.78828 0.76170 0.78018 1.17881 1.20004 1.20019 1.23844 0.90388 0.99398 0.91537 1.68546 1.08036 1.30586 1.10977 0.87997 0.90202 0.86753 0.76477 0.74057 0.91286 0.91277 0.88369 0.88364 0.92175 0.92180 0.74350 0.87013 0.87018 0.92021 0.80345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.08 10.19 71.24 0.73 0.65 16 2 C 0.11 0.89 6.79 42.65 0.29 1.18 16 3 C 0.06 0.39 10.88 84.83 0.92 1.31 16 4 N -0.42 -5.09 9.71 -184.33 -1.79 -6.88 16 5 C 0.00 0.00 6.75 41.88 0.28 0.28 16 6 C 0.57 11.07 7.81 86.88 0.68 11.75 16 7 O -0.56 -14.75 16.35 -3.79 -0.06 -14.81 16 8 N -0.70 -9.71 5.55 -465.67 -2.58 -12.29 16 9 C 0.12 1.72 5.67 86.38 0.49 2.21 16 10 C -0.12 -1.29 5.44 30.60 0.17 -1.12 16 11 C 0.12 2.37 5.67 86.38 0.49 2.86 16 12 N -0.71 -16.04 5.56 -463.07 -2.57 -18.62 16 13 C 0.53 18.98 7.85 87.66 0.69 19.67 16 14 O -0.57 -26.17 15.86 -3.02 -0.05 -26.22 16 15 C -0.13 -4.95 6.16 71.24 0.44 -4.51 16 16 S -0.16 -8.63 20.57 -56.49 -1.16 -9.79 16 17 C -0.55 -30.89 9.50 67.95 0.65 -30.24 16 18 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 19 C 0.01 0.75 5.49 84.86 0.47 1.22 16 20 N -0.91 -56.07 13.22 21.65 0.29 -55.79 16 21 Si 1.00 43.28 29.55 68.60 2.03 45.31 16 22 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 25 C 0.11 1.76 10.77 84.93 0.91 2.67 16 26 N -0.47 -6.87 10.41 -182.22 -1.90 -8.77 16 27 H 0.10 -0.12 8.14 -2.38 -0.02 -0.14 16 28 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 29 H 0.11 -0.55 8.08 -2.39 -0.02 -0.57 16 30 H 0.22 -0.45 8.06 -2.91 -0.02 -0.48 16 31 H 0.42 4.06 7.82 -92.71 -0.73 3.34 16 32 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.10 0.73 8.14 -2.38 -0.02 0.72 16 35 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.42 6.11 8.47 -92.71 -0.79 5.32 16 39 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 40 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 41 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 42 H 0.18 2.86 7.65 -2.91 -0.02 2.84 16 Total: -1.00 -86.83 384.71 -1.05 -87.87 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -0.44 Total: 12.08 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: 7.20 Total: 7.91 kcal Atomic # 7 Polarization: -93.79 SS G_CDS: -8.56 Total: -102.35 kcal Atomic # 8 Polarization: -40.92 SS G_CDS: -0.11 Total: -41.03 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.16 Total: -9.79 kcal Total: -86.83 -1.05 -87.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720217768.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.208 kcal (2) G-P(sol) polarization free energy of solvation -86.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds