Wall clock time and date at job start Tue Mar 31 2020 20:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30855 * 125.41876 * 2 1 4 4 C 1.33315 * 109.68619 * 179.78444 * 3 2 1 5 5 C 1.36667 * 107.78653 * 0.37327 * 4 3 2 6 6 C 1.46758 * 126.84623 * 179.89992 * 5 4 3 7 7 O 1.21681 * 120.00126 * 184.82291 * 6 5 4 8 8 N 1.34785 * 119.99985 * 4.82582 * 6 5 4 9 9 C 1.47579 * 134.49089 * 174.63555 * 8 6 5 10 10 C 1.53944 * 86.11402 * 155.35595 * 9 8 6 11 11 N 1.46501 * 113.74237 * 269.25921 * 10 9 8 12 12 C 1.34778 * 119.99810 * 205.00582 * 11 10 9 13 13 O 1.21284 * 120.00403 * 359.97438 * 12 11 10 14 14 C 1.50696 * 119.99770 * 180.02562 * 12 11 10 15 15 S 1.81002 * 109.47130 * 179.97438 * 14 12 11 16 16 C 1.76203 * 100.00101 * 179.97438 * 15 14 12 17 17 H 1.07991 * 119.99879 * 359.97438 * 16 15 14 18 18 C 1.38799 * 119.99907 * 180.02562 * 16 15 14 19 19 N 1.31630 * 120.00155 * 180.02562 * 18 16 15 20 20 Si 1.86808 * 120.00151 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.46902 * 90.00098 * 20 18 16 22 22 H 1.48498 * 109.47126 * 210.00805 * 20 18 16 23 23 H 1.48501 * 109.46785 * 330.00226 * 20 18 16 24 24 C 1.47574 * 134.49018 * 354.63093 * 8 6 5 25 25 N 1.34493 * 125.41912 * 180.02562 * 2 1 3 26 26 C 1.46498 * 126.47226 * 359.95811 * 25 2 1 27 27 H 1.09000 * 109.47724 * 269.98483 * 1 2 3 28 28 H 1.08997 * 109.47257 * 29.98050 * 1 2 3 29 29 H 1.08999 * 109.47350 * 149.97973 * 1 2 3 30 30 H 1.07997 * 126.10973 * 180.27537 * 4 3 2 31 31 H 1.09001 * 113.76723 * 41.05730 * 9 8 6 32 32 H 1.08999 * 113.76760 * 269.66036 * 9 8 6 33 33 H 1.08998 * 113.73975 * 137.95159 * 10 9 8 34 34 H 0.96993 * 119.99770 * 25.00181 * 11 10 9 35 35 H 1.08994 * 109.47060 * 299.99274 * 14 12 11 36 36 H 1.09004 * 109.47556 * 59.99686 * 14 12 11 37 37 H 0.96997 * 120.00223 * 179.97438 * 19 18 16 38 38 H 1.08995 * 113.76987 * 90.34446 * 24 8 6 39 39 H 1.09003 * 113.87579 * 318.95354 * 24 8 6 40 40 H 1.08999 * 109.47806 * 274.93528 * 26 25 2 41 41 H 1.09008 * 109.47107 * 34.93795 * 26 25 2 42 42 H 1.09001 * 109.47082 * 154.93462 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2653 1.0664 0.0000 4 6 3.5485 0.7049 0.0047 5 6 3.5976 -0.6609 -0.0006 6 6 4.8028 -1.4983 -0.0003 7 8 4.7036 -2.7074 -0.0941 8 7 6.0196 -0.9280 0.1040 9 6 7.3959 -1.4442 0.2355 10 6 7.8445 -0.1075 -0.3824 11 7 7.9482 -0.1384 -1.8434 12 6 8.7710 0.7194 -2.4788 13 8 9.4252 1.5171 -1.8412 14 6 8.8772 0.6881 -3.9817 15 16 10.0527 1.9505 -4.5299 16 6 9.9834 1.6972 -6.2723 17 1 9.3392 0.9333 -6.6816 18 6 10.7575 2.4790 -7.1185 19 7 10.7053 2.2901 -8.4202 20 14 11.8724 3.8001 -6.4104 21 1 13.2100 3.2200 -6.1285 22 1 12.0096 4.9087 -7.3888 23 1 11.2836 4.3216 -5.1508 24 6 6.5106 0.4634 0.1324 25 7 2.2864 -1.0960 -0.0005 26 6 1.8311 -2.4884 -0.0003 27 1 -0.3634 -0.0003 1.0276 28 1 -0.3633 0.8901 -0.5135 29 1 -0.3634 -0.8898 -0.5141 30 1 4.3977 1.3721 0.0101 31 1 7.6022 -2.3102 -0.3936 32 1 7.7171 -1.5807 1.2681 33 1 8.7217 0.3255 0.0981 34 1 7.4247 -0.7761 -2.3534 35 1 9.2240 -0.2947 -4.3010 36 1 7.8992 0.8882 -4.4194 37 1 11.2460 2.8367 -9.0116 38 1 6.5719 0.8873 1.1346 39 1 6.0113 1.1220 -0.5782 40 1 1.6347 -2.8064 1.0237 41 1 0.9170 -2.5719 -0.5883 42 1 2.6027 -3.1231 -0.4361 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721326957.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:20 Heat of formation + Delta-G solvation = 34.926462 kcal Electronic energy + Delta-G solvation = -25992.553519 eV Core-core repulsion = 22101.796697 eV Total energy + Delta-G solvation = -3890.756822 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.64585 -40.82045 -39.06450 -37.81410 -34.52963 -33.68168 -32.45772 -32.40728 -30.39797 -28.99440 -27.67788 -27.37640 -26.26847 -25.63495 -23.40548 -21.76956 -20.79097 -20.36842 -19.54583 -17.98783 -17.59319 -17.02819 -16.95066 -16.51988 -16.19041 -15.85799 -15.41994 -15.15914 -14.97532 -14.45566 -14.10023 -13.99004 -13.75928 -13.60974 -13.44026 -13.33111 -13.26882 -13.21923 -12.82562 -12.80850 -12.77577 -12.30502 -12.04735 -11.51521 -11.28942 -11.02526 -10.68359 -10.63009 -10.16629 -10.08647 -9.89490 -9.69975 -9.29457 -9.15309 -9.01694 -8.79462 -8.54165 -6.94853 -6.30456 -4.02914 0.92245 1.90621 2.42756 2.60110 2.65255 2.78246 2.98583 3.19384 3.31841 3.48567 3.57806 3.84325 3.95253 4.11296 4.31202 4.35215 4.48469 4.49601 4.67034 4.70064 4.80979 4.93121 4.94802 5.01061 5.04888 5.08512 5.11934 5.13032 5.15746 5.21808 5.31278 5.40714 5.59024 5.70779 5.80172 5.97077 6.14382 6.36446 6.63762 7.16413 7.43848 7.51567 7.73411 7.92466 8.32989 8.40389 9.15370 10.78769 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.016844 B = 0.002266 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.916256 B =12354.354127 C =13021.377571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.228 3.772 3 N -0.493 5.493 4 C 0.041 3.959 5 C -0.089 4.089 6 C 0.620 3.380 7 O -0.548 6.548 8 N -0.635 5.635 9 C 0.107 3.893 10 C 0.116 3.884 11 N -0.719 5.719 12 C 0.537 3.463 13 O -0.514 6.514 14 C -0.125 4.125 15 S -0.139 6.139 16 C -0.522 4.522 17 H 0.088 0.912 18 C 0.095 3.905 19 N -0.880 5.880 20 Si 0.857 3.143 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C 0.079 3.921 25 N -0.425 5.425 26 C 0.062 3.938 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.182 0.818 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.127 0.873 34 H 0.403 0.597 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.271 0.729 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.244 -9.212 21.306 29.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.033 4.033 3 N -0.212 5.212 4 C -0.113 4.113 5 C -0.205 4.205 6 C 0.411 3.589 7 O -0.427 6.427 8 N -0.370 5.370 9 C -0.016 4.016 10 C 0.008 3.992 11 N -0.372 5.372 12 C 0.323 3.677 13 O -0.387 6.387 14 C -0.276 4.276 15 S 0.087 5.913 16 C -0.670 4.670 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.516 5.516 20 Si 0.682 3.318 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.159 1.159 24 C -0.045 4.045 25 N -0.106 5.106 26 C -0.079 4.079 27 H 0.103 0.897 28 H 0.114 0.886 29 H 0.095 0.905 30 H 0.199 0.801 31 H 0.110 0.890 32 H 0.121 0.879 33 H 0.145 0.855 34 H 0.238 0.762 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.081 0.919 38 H 0.121 0.879 39 H 0.113 0.887 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -17.683 -7.962 22.092 29.396 hybrid contribution -0.294 -1.535 -0.975 1.842 sum -17.976 -9.498 21.117 29.313 Atomic orbital electron populations 1.20292 0.84236 1.04531 1.03931 1.23502 0.96007 0.81123 1.02718 1.70156 1.02161 1.28047 1.20810 1.22970 0.95299 0.91425 1.01627 1.20559 0.85063 0.94875 1.19996 1.16314 0.80713 0.85890 0.76012 1.90780 1.85985 1.14128 1.51817 1.49653 1.04806 1.09907 1.72655 1.23641 0.77601 0.98244 1.02100 1.22316 0.98468 0.95755 0.82614 1.45657 1.46582 1.39483 1.05493 1.20341 0.77976 0.79552 0.89814 1.90710 1.43288 1.37021 1.67730 1.23284 1.05573 1.05677 0.93059 1.84766 1.54759 1.44323 1.07430 1.22307 1.31610 1.24645 0.88422 0.89376 1.24724 0.95842 0.96628 0.94155 1.69936 1.39766 1.39659 1.02257 0.86729 0.82068 0.81994 0.81015 1.19200 1.19934 1.15882 1.24089 0.93024 0.84740 1.02624 1.45075 1.05041 1.08376 1.52120 1.22336 1.02682 0.78947 1.03985 0.89658 0.88582 0.90493 0.80133 0.88990 0.87861 0.85542 0.76185 0.88340 0.88331 0.91909 0.87852 0.88742 0.90214 0.89439 0.87295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.18 36.00 0.37 -0.01 16 2 C 0.23 2.21 7.88 -155.62 -1.23 0.99 16 3 N -0.49 -5.91 11.20 -10.58 -0.12 -6.03 16 4 C 0.04 0.46 11.01 -17.48 -0.19 0.27 16 5 C -0.09 -1.01 6.91 -82.15 -0.57 -1.57 16 6 C 0.62 7.22 8.01 -12.81 -0.10 7.12 16 7 O -0.55 -7.65 15.50 5.21 0.08 -7.56 16 8 N -0.63 -5.79 3.61 -180.10 -0.65 -6.44 16 9 C 0.11 0.78 8.59 -2.98 -0.03 0.76 16 10 C 0.12 1.00 4.43 -70.16 -0.31 0.69 16 11 N -0.72 -8.02 5.36 -55.35 -0.30 -8.32 16 12 C 0.54 8.58 7.85 -10.99 -0.09 8.50 16 13 O -0.51 -9.91 15.46 5.55 0.09 -9.83 16 14 C -0.13 -2.30 6.16 36.00 0.22 -2.08 16 15 S -0.14 -3.41 18.55 -107.50 -1.99 -5.41 16 16 C -0.52 -14.84 10.04 30.94 0.31 -14.53 16 17 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 18 C 0.10 2.76 5.50 -17.43 -0.10 2.66 16 19 N -0.88 -26.39 13.97 55.49 0.78 -25.62 16 20 Si 0.86 21.48 27.74 -169.99 -4.72 16.77 16 21 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.23 -5.84 6.74 56.52 0.38 -5.46 16 24 C 0.08 0.60 6.88 -2.98 -0.02 0.58 16 25 N -0.43 -4.21 3.17 -117.28 -0.37 -4.58 16 26 C 0.06 0.43 10.59 59.85 0.63 1.06 16 27 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.25 7.13 -51.93 -0.37 -0.12 16 30 H 0.18 1.65 5.15 -52.49 -0.27 1.38 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.13 1.13 7.46 -51.93 -0.39 0.74 16 34 H 0.40 3.97 8.75 -40.82 -0.36 3.62 16 35 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 36 H 0.10 1.71 8.14 -51.91 -0.42 1.29 16 37 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.09 0.77 6.46 -51.93 -0.34 0.44 16 40 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.09 0.35 7.18 -51.92 -0.37 -0.02 16 42 H 0.11 0.95 6.15 -51.93 -0.32 0.63 16 LS Contribution 369.29 15.07 5.57 5.57 Total: -1.00 -37.67 369.29 -8.11 -45.78 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -5.37 Total: 1.24 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: -1.09 Total: 4.43 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: -0.66 Total: -50.98 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: 0.17 Total: -17.39 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.72 Total: 16.77 kcal Atomic # 16 Polarization: -3.41 SS G_CDS: -1.99 Total: -5.41 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -37.67 -8.11 -45.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721326957.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.706 kcal (2) G-P(sol) polarization free energy of solvation -37.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds