Wall clock time and date at job start Tue Mar 31 2020 20:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30855 * 125.41876 * 2 1 4 4 C 1.33315 * 109.68619 * 179.78444 * 3 2 1 5 5 C 1.36667 * 107.78653 * 0.37327 * 4 3 2 6 6 C 1.46758 * 126.84623 * 179.89992 * 5 4 3 7 7 O 1.21681 * 120.00126 * 184.82291 * 6 5 4 8 8 N 1.34785 * 119.99985 * 4.82582 * 6 5 4 9 9 C 1.47579 * 134.49089 * 174.63555 * 8 6 5 10 10 C 1.53944 * 86.11402 * 155.35595 * 9 8 6 11 11 N 1.46501 * 113.74237 * 269.25921 * 10 9 8 12 12 C 1.34778 * 119.99810 * 205.00582 * 11 10 9 13 13 O 1.21284 * 120.00403 * 359.97438 * 12 11 10 14 14 C 1.50696 * 119.99770 * 180.02562 * 12 11 10 15 15 S 1.81002 * 109.47130 * 179.97438 * 14 12 11 16 16 C 1.76203 * 100.00101 * 179.97438 * 15 14 12 17 17 H 1.07991 * 119.99879 * 359.97438 * 16 15 14 18 18 C 1.38799 * 119.99907 * 180.02562 * 16 15 14 19 19 N 1.31630 * 120.00155 * 180.02562 * 18 16 15 20 20 Si 1.86808 * 120.00151 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.46902 * 90.00098 * 20 18 16 22 22 H 1.48498 * 109.47126 * 210.00805 * 20 18 16 23 23 H 1.48501 * 109.46785 * 330.00226 * 20 18 16 24 24 C 1.47574 * 134.49018 * 354.63093 * 8 6 5 25 25 N 1.34493 * 125.41912 * 180.02562 * 2 1 3 26 26 C 1.46498 * 126.47226 * 359.95811 * 25 2 1 27 27 H 1.09000 * 109.47724 * 269.98483 * 1 2 3 28 28 H 1.08997 * 109.47257 * 29.98050 * 1 2 3 29 29 H 1.08999 * 109.47350 * 149.97973 * 1 2 3 30 30 H 1.07997 * 126.10973 * 180.27537 * 4 3 2 31 31 H 1.09001 * 113.76723 * 41.05730 * 9 8 6 32 32 H 1.08999 * 113.76760 * 269.66036 * 9 8 6 33 33 H 1.08998 * 113.73975 * 137.95159 * 10 9 8 34 34 H 0.96993 * 119.99770 * 25.00181 * 11 10 9 35 35 H 1.08994 * 109.47060 * 299.99274 * 14 12 11 36 36 H 1.09004 * 109.47556 * 59.99686 * 14 12 11 37 37 H 0.96997 * 120.00223 * 179.97438 * 19 18 16 38 38 H 1.08995 * 113.76987 * 90.34446 * 24 8 6 39 39 H 1.09003 * 113.87579 * 318.95354 * 24 8 6 40 40 H 1.08999 * 109.47806 * 274.93528 * 26 25 2 41 41 H 1.09008 * 109.47107 * 34.93795 * 26 25 2 42 42 H 1.09001 * 109.47082 * 154.93462 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2653 1.0664 0.0000 4 6 3.5485 0.7049 0.0047 5 6 3.5976 -0.6609 -0.0006 6 6 4.8028 -1.4983 -0.0003 7 8 4.7036 -2.7074 -0.0941 8 7 6.0196 -0.9280 0.1040 9 6 7.3959 -1.4442 0.2355 10 6 7.8445 -0.1075 -0.3824 11 7 7.9482 -0.1384 -1.8434 12 6 8.7710 0.7194 -2.4788 13 8 9.4252 1.5171 -1.8412 14 6 8.8772 0.6881 -3.9817 15 16 10.0527 1.9505 -4.5299 16 6 9.9834 1.6972 -6.2723 17 1 9.3392 0.9333 -6.6816 18 6 10.7575 2.4790 -7.1185 19 7 10.7053 2.2901 -8.4202 20 14 11.8724 3.8001 -6.4104 21 1 13.2100 3.2200 -6.1285 22 1 12.0096 4.9087 -7.3888 23 1 11.2836 4.3216 -5.1508 24 6 6.5106 0.4634 0.1324 25 7 2.2864 -1.0960 -0.0005 26 6 1.8311 -2.4884 -0.0003 27 1 -0.3634 -0.0003 1.0276 28 1 -0.3633 0.8901 -0.5135 29 1 -0.3634 -0.8898 -0.5141 30 1 4.3977 1.3721 0.0101 31 1 7.6022 -2.3102 -0.3936 32 1 7.7171 -1.5807 1.2681 33 1 8.7217 0.3255 0.0981 34 1 7.4247 -0.7761 -2.3534 35 1 9.2240 -0.2947 -4.3010 36 1 7.8992 0.8882 -4.4194 37 1 11.2460 2.8367 -9.0116 38 1 6.5719 0.8873 1.1346 39 1 6.0113 1.1220 -0.5782 40 1 1.6347 -2.8064 1.0237 41 1 0.9170 -2.5719 -0.5883 42 1 2.6027 -3.1231 -0.4361 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721326957.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:19 Heat of formation + Delta-G solvation = 6.958768 kcal Electronic energy + Delta-G solvation = -25993.766289 eV Core-core repulsion = 22101.796697 eV Total energy + Delta-G solvation = -3891.969592 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.37205 -41.65598 -40.19742 -38.74784 -35.25156 -34.75246 -34.64925 -33.06483 -31.44222 -30.05386 -28.37654 -28.00087 -27.83827 -26.89468 -24.22447 -22.68893 -21.79819 -21.08950 -20.29634 -19.90176 -18.42246 -18.01470 -17.80561 -17.37578 -17.20411 -17.03971 -16.68087 -16.42849 -16.34940 -15.64350 -15.18559 -14.98353 -14.77808 -14.66145 -14.36713 -14.22602 -14.14136 -14.03714 -13.78678 -13.50167 -13.34235 -13.32889 -13.17994 -13.00381 -12.87781 -12.64643 -12.25988 -11.85881 -11.45160 -11.16224 -11.07917 -10.99696 -10.81650 -10.53985 -10.24551 -9.97220 -9.52309 -8.98157 -8.50866 -6.21648 0.15791 0.98846 1.23188 1.33172 1.47380 1.50597 1.56009 1.67634 1.95021 2.11994 2.20106 2.26225 2.70545 2.87448 3.13268 3.33163 3.45398 3.75026 3.80574 3.82453 3.87842 4.16901 4.22412 4.24744 4.30158 4.36308 4.47467 4.50053 4.55699 4.59417 4.67207 4.70625 4.71284 4.78497 5.01020 5.12801 5.39971 5.42591 5.70920 5.99918 6.12036 6.33488 6.42634 6.75660 6.93805 6.93976 7.11952 8.61658 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.016844 B = 0.002266 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.916256 B =12354.354127 C =13021.377571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.229 3.771 3 N -0.530 5.530 4 C 0.035 3.965 5 C -0.111 4.111 6 C 0.616 3.384 7 O -0.580 6.580 8 N -0.635 5.635 9 C 0.114 3.886 10 C 0.111 3.889 11 N -0.699 5.699 12 C 0.546 3.454 13 O -0.548 6.548 14 C -0.116 4.116 15 S -0.165 6.165 16 C -0.531 4.531 17 H 0.059 0.941 18 C 0.043 3.957 19 N -0.919 5.919 20 Si 0.917 3.083 21 H -0.261 1.261 22 H -0.261 1.261 23 H -0.233 1.233 24 C 0.085 3.915 25 N -0.431 5.431 26 C 0.060 3.940 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.193 0.807 31 H 0.089 0.911 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.412 0.588 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.277 0.723 38 H 0.134 0.866 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.117 0.883 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.160 -9.355 23.406 31.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.033 4.033 3 N -0.249 5.249 4 C -0.119 4.119 5 C -0.227 4.227 6 C 0.407 3.593 7 O -0.462 6.462 8 N -0.369 5.369 9 C -0.008 4.008 10 C 0.004 3.996 11 N -0.351 5.351 12 C 0.332 3.668 13 O -0.425 6.425 14 C -0.267 4.267 15 S 0.061 5.939 16 C -0.679 4.679 17 H 0.077 0.923 18 C -0.162 4.162 19 N -0.557 5.557 20 Si 0.738 3.262 21 H -0.186 1.186 22 H -0.185 1.185 23 H -0.157 1.157 24 C -0.038 4.038 25 N -0.111 5.111 26 C -0.081 4.081 27 H 0.120 0.880 28 H 0.115 0.885 29 H 0.119 0.881 30 H 0.210 0.790 31 H 0.107 0.893 32 H 0.151 0.849 33 H 0.149 0.851 34 H 0.248 0.752 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.086 0.914 38 H 0.151 0.849 39 H 0.107 0.893 40 H 0.111 0.889 41 H 0.136 0.864 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -18.617 -8.135 24.207 31.603 hybrid contribution -0.146 -1.611 -1.579 2.261 sum -18.763 -9.746 22.628 30.969 Atomic orbital electron populations 1.20507 0.81258 1.05762 1.05374 1.24306 0.97581 0.80575 1.00845 1.70159 1.02765 1.29471 1.22506 1.23224 0.95656 0.91680 1.01365 1.20687 0.85771 0.95033 1.21181 1.16431 0.81425 0.85553 0.75888 1.90759 1.86524 1.15278 1.53619 1.49747 1.04738 1.10810 1.71578 1.23794 0.76220 0.97145 1.03597 1.22509 0.99315 0.97213 0.80545 1.45434 1.44830 1.37954 1.06928 1.19789 0.78487 0.79998 0.88510 1.90703 1.45123 1.38777 1.67925 1.23286 1.04130 1.03937 0.95343 1.84599 1.57382 1.47453 1.04444 1.22483 1.30780 1.23708 0.90921 0.92267 1.25624 0.97317 0.98809 0.94497 1.70024 1.41035 1.41065 1.03562 0.85832 0.80158 0.79626 0.80542 1.18587 1.18549 1.15658 1.24220 0.91490 0.84002 1.04096 1.45331 1.04676 1.09443 1.51695 1.22491 1.03084 0.77209 1.05267 0.87971 0.88452 0.88124 0.79036 0.89252 0.84877 0.85071 0.75196 0.87041 0.87269 0.91393 0.84872 0.89276 0.88869 0.86445 0.89378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.57 10.18 71.24 0.73 0.15 16 2 C 0.23 4.13 7.88 138.20 1.09 5.22 16 3 N -0.53 -12.31 11.20 -187.40 -2.10 -14.41 16 4 C 0.04 0.76 11.01 84.10 0.93 1.69 16 5 C -0.11 -2.43 6.91 40.01 0.28 -2.15 16 6 C 0.62 13.85 8.01 86.47 0.69 14.55 16 7 O -0.58 -16.01 15.50 -4.29 -0.07 -16.07 16 8 N -0.63 -10.43 3.61 -841.92 -3.04 -13.46 16 9 C 0.11 1.38 8.59 86.48 0.74 2.13 16 10 C 0.11 1.64 4.43 46.75 0.21 1.85 16 11 N -0.70 -14.30 5.36 -447.42 -2.40 -16.70 16 12 C 0.55 16.70 7.85 87.66 0.69 17.39 16 13 O -0.55 -20.48 15.46 -3.04 -0.05 -20.53 16 14 C -0.12 -4.17 6.16 71.23 0.44 -3.73 16 15 S -0.17 -8.08 18.55 -56.49 -1.05 -9.13 16 16 C -0.53 -30.68 10.04 67.95 0.68 -30.00 16 17 H 0.06 3.63 8.03 -2.91 -0.02 3.61 16 18 C 0.04 2.50 5.50 84.86 0.47 2.96 16 19 N -0.92 -55.98 13.97 21.65 0.30 -55.68 16 20 Si 0.92 44.40 27.74 68.60 1.90 46.31 16 21 H -0.26 -12.31 7.11 99.48 0.71 -11.60 16 22 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 23 H -0.23 -11.12 6.74 99.48 0.67 -10.45 16 24 C 0.08 1.08 6.88 86.48 0.60 1.68 16 25 N -0.43 -8.05 3.17 -524.95 -1.67 -9.72 16 26 C 0.06 0.74 10.59 127.77 1.35 2.09 16 27 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.10 0.32 7.13 -2.39 -0.02 0.31 16 30 H 0.19 3.33 5.15 -2.91 -0.02 3.31 16 31 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.13 1.99 7.46 -2.39 -0.02 1.97 16 34 H 0.41 7.35 8.75 -92.71 -0.81 6.54 16 35 H 0.11 3.73 8.14 -2.40 -0.02 3.71 16 36 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 37 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 38 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.09 1.29 6.46 -2.39 -0.02 1.28 16 40 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.12 0.66 7.18 -2.38 -0.02 0.64 16 42 H 0.09 1.51 6.15 -2.39 -0.01 1.50 16 Total: -1.00 -83.29 369.29 0.95 -82.34 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 0.23 Total: 13.23 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 8.88 Total: 13.82 kcal Atomic # 7 Polarization: -101.07 SS G_CDS: -8.90 Total: -109.97 kcal Atomic # 8 Polarization: -36.49 SS G_CDS: -0.11 Total: -36.60 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.90 Total: 46.31 kcal Atomic # 16 Polarization: -8.08 SS G_CDS: -1.05 Total: -9.13 kcal Total: -83.29 0.95 -82.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721326957.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.301 kcal (2) G-P(sol) polarization free energy of solvation -83.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds