Wall clock time and date at job start Tue Mar 31 2020 21:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47035 * 2 1 4 4 H 1.09008 * 109.47105 * 55.00059 * 3 2 1 5 5 C 1.52997 * 109.47049 * 174.99875 * 3 2 1 6 6 N 1.46506 * 109.47289 * 174.99938 * 5 3 2 7 7 C 1.34774 * 120.00072 * 180.02562 * 6 5 3 8 8 O 1.21468 * 120.00292 * 0.02562 * 7 6 5 9 9 C 1.48536 * 119.99551 * 180.02562 * 7 6 5 10 10 N 1.32457 * 119.19165 * 359.72822 * 9 7 6 11 11 C 1.32109 * 120.76753 * 179.75974 * 10 9 7 12 12 C 1.38796 * 119.16918 * 0.50651 * 11 10 9 13 13 C 1.38802 * 118.50388 * 359.75049 * 12 11 10 14 14 N 1.32117 * 119.16530 * 359.97438 * 13 12 11 15 15 N 1.46500 * 109.47196 * 295.00088 * 3 2 1 16 16 C 1.34772 * 120.00014 * 84.99784 * 15 3 2 17 17 O 1.21281 * 120.00299 * 0.02562 * 16 15 3 18 18 C 1.50698 * 119.99783 * 179.97438 * 16 15 3 19 19 S 1.81008 * 109.47146 * 180.02562 * 18 16 15 20 20 C 1.76197 * 100.00064 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99799 * 0.02562 * 20 19 18 22 22 C 1.38796 * 119.99668 * 179.97438 * 20 19 18 23 23 N 1.31624 * 120.00528 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99960 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47290 * 89.99743 * 24 22 20 26 26 H 1.48501 * 109.47163 * 210.00602 * 24 22 20 27 27 H 1.48503 * 109.46841 * 329.99954 * 24 22 20 28 28 H 1.09000 * 109.46883 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47061 * 299.99857 * 1 2 3 30 30 H 1.08997 * 109.46835 * 59.99772 * 1 2 3 31 31 H 1.08992 * 109.46939 * 240.00039 * 2 1 3 32 32 H 1.09002 * 109.47368 * 119.99739 * 2 1 3 33 33 H 1.09001 * 109.47289 * 54.99809 * 5 3 2 34 34 H 1.09004 * 109.47261 * 295.00065 * 5 3 2 35 35 H 0.97001 * 119.99251 * 0.02562 * 6 5 3 36 36 H 1.08008 * 120.41523 * 180.26173 * 11 10 9 37 37 H 1.08002 * 120.75376 * 179.77094 * 12 11 10 38 38 H 1.07999 * 120.41708 * 180.02562 * 13 12 11 39 39 H 0.96994 * 119.99416 * 265.00201 * 15 3 2 40 40 H 1.09001 * 109.47573 * 300.00021 * 18 16 15 41 41 H 1.08995 * 109.47158 * 60.00423 * 18 16 15 42 42 H 0.97002 * 120.00509 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8419 5 6 3.5648 1.4444 0.1258 6 7 4.0631 2.8169 0.0060 7 6 5.3857 3.0630 0.0858 8 8 6.1648 2.1468 0.2567 9 6 5.8908 4.4546 -0.0350 10 7 5.0275 5.4408 -0.2265 11 6 5.4420 6.6906 -0.3336 12 6 6.8009 6.9618 -0.2537 13 6 7.6772 5.9033 -0.0579 14 7 7.1939 4.6781 0.0463 15 7 1.6524 2.0975 -1.2518 16 6 0.4351 2.6644 -1.3669 17 8 -0.3393 2.6327 -0.4341 18 6 0.0367 3.3386 -2.6544 19 16 -1.6419 3.9972 -2.4963 20 6 -1.8436 4.7081 -4.0958 21 1 -1.0437 4.6466 -4.8189 22 6 -3.0309 5.3462 -4.4269 23 7 -4.0059 5.4208 -3.5459 24 14 -3.2451 6.0993 -6.1229 25 1 -3.8211 5.0875 -7.0447 26 1 -4.1594 7.2661 -6.0345 27 1 -1.9247 6.5431 -6.6377 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.9954 0.8311 -0.6658 34 1 3.8499 1.0377 1.0961 35 1 3.4409 3.5484 -0.1308 36 1 4.7327 7.4908 -0.4855 37 1 7.1682 7.9736 -0.3416 38 1 8.7406 6.0791 0.0094 39 1 2.2719 2.1231 -1.9977 40 1 0.7281 4.1542 -2.8666 41 1 0.0680 2.6146 -3.4685 42 1 -4.8359 5.8664 -3.7774 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721498288.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:31 Heat of formation + Delta-G solvation = -22.281809 kcal Electronic energy + Delta-G solvation = -26002.936861 eV Core-core repulsion = 22109.699302 eV Total energy + Delta-G solvation = -3893.237559 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.61829 -40.01940 -39.18430 -36.50571 -34.58040 -33.82446 -32.67550 -32.45456 -32.40503 -29.51698 -28.35898 -25.83769 -25.48259 -24.98296 -23.37960 -21.53026 -21.12587 -20.36870 -18.88071 -18.04651 -17.79189 -16.72902 -16.58331 -16.18649 -16.00973 -15.87292 -15.39340 -15.17447 -14.82427 -14.66237 -14.19124 -14.06528 -14.02690 -13.59068 -13.45136 -13.12620 -13.04418 -12.52741 -12.29955 -11.77425 -11.71654 -11.46915 -11.38277 -11.22803 -11.07944 -11.03814 -10.79795 -10.75455 -10.40767 -10.22875 -9.82949 -9.77979 -9.47176 -9.34345 -9.08803 -8.90369 -8.25637 -6.51481 -6.23740 -3.93957 0.00761 0.58997 2.29739 2.40970 2.99277 3.05806 3.20529 3.26102 3.29721 3.45033 3.49300 3.67758 3.88306 4.07704 4.18589 4.37836 4.44303 4.54425 4.75422 4.87202 5.01338 5.11646 5.12628 5.22973 5.23208 5.38088 5.44073 5.59807 5.75200 5.78293 5.84960 5.88308 6.02503 6.08226 6.12830 6.23814 6.41228 6.57401 6.63898 7.03188 7.47955 7.57655 7.65477 7.81962 8.33216 8.58116 9.21882 10.83583 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009676 B = 0.002920 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2893.097097 B = 9588.079006 C =12003.836213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.129 4.129 3 C 0.135 3.865 4 H 0.098 0.902 5 C 0.112 3.888 6 N -0.705 5.705 7 C 0.585 3.415 8 O -0.506 6.506 9 C 0.281 3.719 10 N -0.491 5.491 11 C 0.150 3.850 12 C -0.207 4.207 13 C 0.144 3.856 14 N -0.470 5.470 15 N -0.736 5.736 16 C 0.534 3.466 17 O -0.508 6.508 18 C -0.155 4.155 19 S -0.057 6.057 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.917 3.083 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.045 0.955 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.417 0.583 36 H 0.180 0.820 37 H 0.156 0.844 38 H 0.177 0.823 39 H 0.398 0.602 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.667 -1.106 6.953 22.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C 0.029 3.971 4 H 0.116 0.884 5 C -0.011 4.011 6 N -0.360 5.360 7 C 0.366 3.634 8 O -0.378 6.378 9 C 0.011 3.989 10 N -0.208 5.208 11 C -0.017 4.017 12 C -0.229 4.229 13 C -0.022 4.022 14 N -0.185 5.185 15 N -0.391 5.391 16 C 0.320 3.680 17 O -0.382 6.382 18 C -0.305 4.305 19 S 0.169 5.831 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.254 0.746 36 H 0.197 0.803 37 H 0.174 0.826 38 H 0.194 0.806 39 H 0.232 0.768 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 20.398 -2.752 8.775 22.375 hybrid contribution 1.136 1.974 -2.760 3.579 sum 21.534 -0.778 6.015 22.372 Atomic orbital electron populations 1.21805 0.93948 1.00735 1.03896 1.21878 0.97855 0.94791 1.02271 1.21249 0.91990 0.94877 0.88972 0.88449 1.21809 0.93128 0.82602 1.03608 1.45779 1.06819 1.10825 1.72532 1.17223 0.82706 0.85402 0.78068 1.90816 1.56018 1.43715 1.47281 1.22850 0.86399 0.94480 0.95159 1.68346 1.39658 1.01072 1.11678 1.23410 0.94752 0.93582 0.89925 1.23244 0.95901 1.02629 1.01165 1.23413 1.01463 0.86910 0.90428 1.68246 1.14707 1.24265 1.11243 1.46112 1.17478 1.59494 1.16066 1.20237 0.80743 0.77396 0.89588 1.90719 1.50286 1.57147 1.40024 1.23547 1.07050 1.02828 0.97124 1.85367 1.06411 1.70885 1.20411 1.22866 1.03924 1.42070 0.99532 0.90997 1.24978 0.94860 0.95569 0.98125 1.70009 1.04990 1.41101 1.34184 0.86187 0.78221 0.78683 0.82525 1.20280 1.20758 1.19717 0.93563 0.91977 0.91710 0.91626 0.91092 0.90309 0.89515 0.74564 0.80326 0.82632 0.80602 0.76781 0.89296 0.89361 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 8.52 37.16 0.32 -1.61 16 2 C -0.13 -1.29 5.61 -26.73 -0.15 -1.44 16 3 C 0.13 1.40 2.41 -67.93 -0.16 1.24 16 4 H 0.10 1.18 7.58 -51.92 -0.39 0.78 16 5 C 0.11 1.03 5.23 -4.04 -0.02 1.01 16 6 N -0.71 -7.41 5.38 -61.02 -0.33 -7.73 16 7 C 0.58 7.41 7.85 -12.01 -0.09 7.31 16 8 O -0.51 -7.77 16.86 5.39 0.09 -7.68 16 9 C 0.28 3.33 7.60 -157.07 -1.19 2.14 16 10 N -0.49 -5.09 9.58 -11.12 -0.11 -5.20 16 11 C 0.15 1.07 11.30 -17.23 -0.19 0.88 16 12 C -0.21 -1.09 10.18 -39.17 -0.40 -1.49 16 13 C 0.14 1.01 11.30 -17.22 -0.19 0.82 16 14 N -0.47 -5.32 10.13 -11.12 -0.11 -5.43 16 15 N -0.74 -8.75 4.47 -53.81 -0.24 -8.99 16 16 C 0.53 8.98 6.42 -10.99 -0.07 8.91 16 17 O -0.51 -10.26 13.00 5.56 0.07 -10.18 16 18 C -0.15 -2.95 6.16 36.00 0.22 -2.73 16 19 S -0.06 -1.50 20.57 -107.50 -2.21 -3.71 16 20 C -0.54 -14.93 9.50 30.94 0.29 -14.64 16 21 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 22 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -25.74 13.22 55.49 0.73 -25.01 16 24 Si 0.92 21.08 29.55 -169.99 -5.02 16.06 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.89 7.85 -51.93 -0.41 0.48 16 30 H 0.06 1.04 5.64 -51.93 -0.29 0.74 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.42 4.42 7.44 -40.82 -0.30 4.12 16 36 H 0.18 0.78 8.06 -52.48 -0.42 0.35 16 37 H 0.16 0.26 8.06 -52.49 -0.42 -0.16 16 38 H 0.18 0.60 8.06 -52.49 -0.42 0.17 16 39 H 0.40 3.95 8.60 -40.82 -0.35 3.59 16 40 H 0.09 1.58 8.14 -51.91 -0.42 1.16 16 41 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 42 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 376.06 15.07 5.67 5.67 Total: -1.00 -36.58 376.06 -8.73 -45.30 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -5.52 Total: 4.54 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -1.74 Total: 2.37 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: -0.05 Total: -52.36 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: 0.16 Total: -17.87 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.58 -8.73 -45.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721498288.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.020 kcal (2) G-P(sol) polarization free energy of solvation -36.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds