Wall clock time and date at job start Tue Mar 31 2020 21:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47035 * 2 1 4 4 H 1.09008 * 109.47105 * 55.00059 * 3 2 1 5 5 C 1.52997 * 109.47049 * 174.99875 * 3 2 1 6 6 N 1.46506 * 109.47289 * 174.99938 * 5 3 2 7 7 C 1.34774 * 120.00072 * 180.02562 * 6 5 3 8 8 O 1.21468 * 120.00292 * 0.02562 * 7 6 5 9 9 C 1.48536 * 119.99551 * 180.02562 * 7 6 5 10 10 N 1.32457 * 119.19165 * 359.72822 * 9 7 6 11 11 C 1.32109 * 120.76753 * 179.75974 * 10 9 7 12 12 C 1.38796 * 119.16918 * 0.50651 * 11 10 9 13 13 C 1.38802 * 118.50388 * 359.75049 * 12 11 10 14 14 N 1.32117 * 119.16530 * 359.97438 * 13 12 11 15 15 N 1.46500 * 109.47196 * 295.00088 * 3 2 1 16 16 C 1.34772 * 120.00014 * 84.99784 * 15 3 2 17 17 O 1.21281 * 120.00299 * 0.02562 * 16 15 3 18 18 C 1.50698 * 119.99783 * 179.97438 * 16 15 3 19 19 S 1.81008 * 109.47146 * 180.02562 * 18 16 15 20 20 C 1.76197 * 100.00064 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99799 * 0.02562 * 20 19 18 22 22 C 1.38796 * 119.99668 * 179.97438 * 20 19 18 23 23 N 1.31624 * 120.00528 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99960 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47290 * 89.99743 * 24 22 20 26 26 H 1.48501 * 109.47163 * 210.00602 * 24 22 20 27 27 H 1.48503 * 109.46841 * 329.99954 * 24 22 20 28 28 H 1.09000 * 109.46883 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47061 * 299.99857 * 1 2 3 30 30 H 1.08997 * 109.46835 * 59.99772 * 1 2 3 31 31 H 1.08992 * 109.46939 * 240.00039 * 2 1 3 32 32 H 1.09002 * 109.47368 * 119.99739 * 2 1 3 33 33 H 1.09001 * 109.47289 * 54.99809 * 5 3 2 34 34 H 1.09004 * 109.47261 * 295.00065 * 5 3 2 35 35 H 0.97001 * 119.99251 * 0.02562 * 6 5 3 36 36 H 1.08008 * 120.41523 * 180.26173 * 11 10 9 37 37 H 1.08002 * 120.75376 * 179.77094 * 12 11 10 38 38 H 1.07999 * 120.41708 * 180.02562 * 13 12 11 39 39 H 0.96994 * 119.99416 * 265.00201 * 15 3 2 40 40 H 1.09001 * 109.47573 * 300.00021 * 18 16 15 41 41 H 1.08995 * 109.47158 * 60.00423 * 18 16 15 42 42 H 0.97002 * 120.00509 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8419 5 6 3.5648 1.4444 0.1258 6 7 4.0631 2.8169 0.0060 7 6 5.3857 3.0630 0.0858 8 8 6.1648 2.1468 0.2567 9 6 5.8908 4.4546 -0.0350 10 7 5.0275 5.4408 -0.2265 11 6 5.4420 6.6906 -0.3336 12 6 6.8009 6.9618 -0.2537 13 6 7.6772 5.9033 -0.0579 14 7 7.1939 4.6781 0.0463 15 7 1.6524 2.0975 -1.2518 16 6 0.4351 2.6644 -1.3669 17 8 -0.3393 2.6327 -0.4341 18 6 0.0367 3.3386 -2.6544 19 16 -1.6419 3.9972 -2.4963 20 6 -1.8436 4.7081 -4.0958 21 1 -1.0437 4.6466 -4.8189 22 6 -3.0309 5.3462 -4.4269 23 7 -4.0059 5.4208 -3.5459 24 14 -3.2451 6.0993 -6.1229 25 1 -3.8211 5.0875 -7.0447 26 1 -4.1594 7.2661 -6.0345 27 1 -1.9247 6.5431 -6.6377 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.9954 0.8311 -0.6658 34 1 3.8499 1.0377 1.0961 35 1 3.4409 3.5484 -0.1308 36 1 4.7327 7.4908 -0.4855 37 1 7.1682 7.9736 -0.3416 38 1 8.7406 6.0791 0.0094 39 1 2.2719 2.1231 -1.9977 40 1 0.7281 4.1542 -2.8666 41 1 0.0680 2.6146 -3.4685 42 1 -4.8359 5.8664 -3.7774 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721498288.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:31 Heat of formation + Delta-G solvation = -50.397571 kcal Electronic energy + Delta-G solvation = -26004.156052 eV Core-core repulsion = 22109.699302 eV Total energy + Delta-G solvation = -3894.456750 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.27825 -41.11091 -40.22721 -37.60380 -35.39320 -34.62051 -34.56417 -33.59648 -33.25824 -30.77418 -29.48414 -27.64007 -26.58243 -25.55502 -24.22322 -22.56819 -21.99732 -21.53766 -19.93296 -19.50204 -18.69978 -17.94219 -17.45585 -17.08888 -16.88390 -16.86177 -16.74450 -16.50497 -15.98899 -15.95889 -15.35678 -14.95470 -14.86668 -14.60772 -14.57182 -14.50532 -14.23396 -13.84660 -13.48256 -13.14588 -12.99761 -12.87530 -12.61934 -12.48946 -12.34344 -12.16538 -12.05928 -11.75637 -11.68811 -11.31165 -11.12992 -10.83401 -10.78891 -10.41468 -10.26956 -10.23787 -10.04437 -8.62277 -8.33223 -6.09657 -0.63168 0.04574 1.28769 1.42472 1.47771 1.49627 1.57558 1.63140 1.70678 2.26366 2.32261 2.77561 2.83784 3.00947 3.24306 3.34860 3.51002 3.63727 3.88595 3.99020 4.02149 4.07625 4.14096 4.34232 4.35752 4.40556 4.53180 4.56624 4.61568 4.77074 4.84156 4.92914 5.08129 5.17052 5.23359 5.26714 5.43389 5.50757 5.55843 5.86328 6.17468 6.21195 6.51741 6.77495 6.97733 7.08579 7.30357 8.75674 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009676 B = 0.002920 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2893.097097 B = 9588.079006 C =12003.836213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.122 4.122 3 C 0.141 3.859 4 H 0.082 0.918 5 C 0.119 3.881 6 N -0.698 5.698 7 C 0.583 3.417 8 O -0.543 6.543 9 C 0.253 3.747 10 N -0.509 5.509 11 C 0.132 3.868 12 C -0.179 4.179 13 C 0.132 3.868 14 N -0.504 5.504 15 N -0.712 5.712 16 C 0.540 3.460 17 O -0.546 6.546 18 C -0.133 4.133 19 S -0.141 6.141 20 C -0.547 4.547 21 H 0.080 0.920 22 C 0.015 3.985 23 N -0.910 5.910 24 Si 0.995 3.005 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.258 1.258 28 H 0.058 0.942 29 H 0.042 0.958 30 H 0.032 0.968 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.417 0.583 36 H 0.206 0.794 37 H 0.200 0.800 38 H 0.210 0.790 39 H 0.412 0.588 40 H 0.106 0.894 41 H 0.103 0.897 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.052 -0.213 5.719 24.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.161 4.161 3 C 0.036 3.964 4 H 0.100 0.900 5 C -0.004 4.004 6 N -0.351 5.351 7 C 0.365 3.635 8 O -0.418 6.418 9 C -0.017 4.017 10 N -0.226 5.226 11 C -0.033 4.033 12 C -0.200 4.200 13 C -0.033 4.033 14 N -0.220 5.220 15 N -0.367 5.367 16 C 0.326 3.674 17 O -0.423 6.423 18 C -0.284 4.284 19 S 0.086 5.914 20 C -0.695 4.695 21 H 0.098 0.902 22 C -0.190 4.190 23 N -0.547 5.547 24 Si 0.817 3.183 25 H -0.195 1.195 26 H -0.203 1.203 27 H -0.182 1.182 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.109 0.891 34 H 0.115 0.885 35 H 0.254 0.746 36 H 0.222 0.778 37 H 0.217 0.783 38 H 0.227 0.773 39 H 0.248 0.752 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 22.818 -1.864 7.532 24.101 hybrid contribution 0.508 1.741 -2.317 2.943 sum 23.326 -0.123 5.215 23.902 Atomic orbital electron populations 1.21737 0.96336 1.00689 1.01363 1.21854 0.95424 0.94487 1.04357 1.21287 0.92797 0.94968 0.87337 0.90002 1.21827 0.91661 0.82265 1.04696 1.45769 1.06326 1.11263 1.71717 1.17477 0.82811 0.85822 0.77353 1.90777 1.56824 1.44897 1.49315 1.22594 0.87039 0.94330 0.97748 1.68301 1.39905 1.02154 1.12278 1.24029 0.96555 0.93040 0.89723 1.23692 0.94647 1.04130 0.97519 1.24103 1.03385 0.86065 0.89717 1.68200 1.14691 1.26748 1.12338 1.45837 1.15801 1.57891 1.17182 1.19829 0.81809 0.77532 0.88239 1.90719 1.51798 1.58841 1.40921 1.23391 1.02318 1.03608 0.99066 1.85502 1.12809 1.71913 1.21198 1.23204 1.04436 1.42035 0.99779 0.90193 1.26070 0.94389 0.95938 1.02605 1.70170 1.05660 1.42222 1.36652 0.85005 0.78708 0.77742 0.76850 1.19504 1.20290 1.18232 0.92326 0.93914 0.94837 0.90030 0.88485 0.89090 0.88471 0.74603 0.77782 0.78273 0.77313 0.75158 0.87578 0.87847 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.77 8.52 71.98 0.61 -3.15 16 2 C -0.12 -2.23 5.61 30.60 0.17 -2.06 16 3 C 0.14 2.78 2.41 44.99 0.11 2.89 16 4 H 0.08 1.96 7.58 -2.38 -0.02 1.94 16 5 C 0.12 2.01 5.23 86.38 0.45 2.46 16 6 N -0.70 -14.25 5.38 -465.29 -2.50 -16.75 16 7 C 0.58 14.80 7.85 86.99 0.68 15.48 16 8 O -0.54 -16.83 16.86 -3.62 -0.06 -16.89 16 9 C 0.25 5.95 7.60 137.68 1.05 7.00 16 10 N -0.51 -10.18 9.58 -189.09 -1.81 -11.99 16 11 C 0.13 1.61 11.30 84.78 0.96 2.56 16 12 C -0.18 -1.29 10.18 22.54 0.23 -1.06 16 13 C 0.13 1.56 11.30 84.79 0.96 2.52 16 14 N -0.50 -11.13 10.13 -189.09 -1.92 -13.04 16 15 N -0.71 -16.15 4.47 -442.53 -1.98 -18.12 16 16 C 0.54 18.16 6.42 87.66 0.56 18.72 16 17 O -0.55 -22.73 13.00 -3.03 -0.04 -22.77 16 18 C -0.13 -5.02 6.16 71.24 0.44 -4.58 16 19 S -0.14 -7.60 20.57 -56.49 -1.16 -8.77 16 20 C -0.55 -30.68 9.50 67.95 0.65 -30.04 16 21 H 0.08 4.19 7.80 -2.91 -0.02 4.17 16 22 C 0.01 0.83 5.49 84.86 0.47 1.30 16 23 N -0.91 -55.19 13.22 21.65 0.29 -54.90 16 24 Si 0.99 43.01 29.55 68.60 2.03 45.04 16 25 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 26 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 27 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 28 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.04 1.26 7.85 -2.39 -0.02 1.24 16 30 H 0.03 1.08 5.64 -2.39 -0.01 1.06 16 31 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 35 H 0.42 8.65 7.44 -92.71 -0.69 7.96 16 36 H 0.21 1.22 8.06 -2.91 -0.02 1.20 16 37 H 0.20 -0.37 8.06 -2.91 -0.02 -0.39 16 38 H 0.21 0.78 8.06 -2.91 -0.02 0.75 16 39 H 0.41 7.35 8.60 -92.71 -0.80 6.55 16 40 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 41 H 0.10 3.60 8.14 -2.40 -0.02 3.58 16 42 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -84.27 376.06 -0.24 -84.51 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: -0.42 Total: 21.66 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 7.33 Total: 12.03 kcal Atomic # 7 Polarization: -106.89 SS G_CDS: -7.92 Total: -114.81 kcal Atomic # 8 Polarization: -39.56 SS G_CDS: -0.10 Total: -39.66 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: -7.60 SS G_CDS: -1.16 Total: -8.77 kcal Total: -84.27 -0.24 -84.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721498288.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.108 kcal (2) G-P(sol) polarization free energy of solvation -84.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds