Wall clock time and date at job start Tue Mar 31 2020 21:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46992 * 2 1 4 4 H 1.09001 * 109.47375 * 305.00364 * 3 2 1 5 5 C 1.53006 * 109.47164 * 185.00330 * 3 2 1 6 6 N 1.46496 * 109.47070 * 185.00131 * 5 3 2 7 7 C 1.34775 * 119.99828 * 180.02562 * 6 5 3 8 8 O 1.21470 * 120.00111 * 359.97438 * 7 6 5 9 9 C 1.48539 * 120.00270 * 179.97438 * 7 6 5 10 10 N 1.32470 * 119.18365 * 359.72921 * 9 7 6 11 11 C 1.32112 * 120.76825 * 179.75915 * 10 9 7 12 12 C 1.38806 * 119.16015 * 0.50548 * 11 10 9 13 13 C 1.38804 * 118.50848 * 359.74564 * 12 11 10 14 14 N 1.32113 * 119.16359 * 0.02562 * 13 12 11 15 15 N 1.46504 * 109.47417 * 65.00416 * 3 2 1 16 16 C 1.34774 * 119.99618 * 275.00242 * 15 3 2 17 17 O 1.21281 * 120.00442 * 359.97438 * 16 15 3 18 18 C 1.50698 * 119.99927 * 179.97438 * 16 15 3 19 19 S 1.81005 * 109.47336 * 179.97438 * 18 16 15 20 20 C 1.76203 * 99.99914 * 179.97438 * 19 18 16 21 21 H 1.08004 * 120.00239 * 359.97438 * 20 19 18 22 22 C 1.38798 * 119.99809 * 179.97438 * 20 19 18 23 23 N 1.31627 * 120.00024 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 119.99903 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47284 * 90.00030 * 24 22 20 26 26 H 1.48504 * 109.46801 * 209.99953 * 24 22 20 27 27 H 1.48499 * 109.46976 * 329.99676 * 24 22 20 28 28 H 1.08996 * 109.47264 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46717 * 299.99642 * 1 2 3 30 30 H 1.09000 * 109.46966 * 59.99762 * 1 2 3 31 31 H 1.08998 * 109.46717 * 240.00358 * 2 1 3 32 32 H 1.09002 * 109.47471 * 120.00258 * 2 1 3 33 33 H 1.09004 * 109.46579 * 304.99685 * 5 3 2 34 34 H 1.08992 * 109.47046 * 64.99868 * 5 3 2 35 35 H 0.97001 * 120.00404 * 359.97438 * 6 5 3 36 36 H 1.07998 * 120.41714 * 180.25467 * 11 10 9 37 37 H 1.07994 * 120.74129 * 179.77451 * 12 11 10 38 38 H 1.07997 * 120.41359 * 180.02562 * 13 12 11 39 39 H 0.96990 * 120.00057 * 94.99539 * 15 3 2 40 40 H 1.09005 * 109.46834 * 299.99458 * 18 16 15 41 41 H 1.08998 * 109.47729 * 59.99510 * 18 16 15 42 42 H 0.97002 * 119.99832 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5649 1.4444 -0.1258 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0631 -0.0870 8 8 6.1646 2.1470 -0.2588 9 6 5.8908 4.4547 0.0339 10 7 5.0266 5.4421 0.2156 11 6 5.4418 6.6908 0.3319 12 6 6.8007 6.9620 0.2509 13 6 7.6770 5.9035 0.0549 14 7 7.1937 4.6783 -0.0484 15 7 1.6525 2.0975 1.2519 16 6 0.4352 2.6643 1.3670 17 8 -0.3393 2.6326 0.4343 18 6 0.0363 3.3376 2.6549 19 16 -1.6421 3.9964 2.4967 20 6 -1.8443 4.7061 4.0968 21 1 -1.0446 4.6440 4.8201 22 6 -3.0312 5.3450 4.4277 23 7 -3.1825 5.8747 5.6231 24 14 -4.4146 5.4518 3.1769 25 1 -5.3015 4.2690 3.3174 26 1 -5.1999 6.6901 3.4119 27 1 -3.8421 5.4813 1.8070 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.9954 0.8311 0.6659 34 1 3.8498 1.0378 -1.0961 35 1 3.4410 3.5484 0.1308 36 1 4.7326 7.4910 0.4840 37 1 7.1679 7.9738 0.3388 38 1 8.7404 6.0794 -0.0124 39 1 2.2720 2.1231 1.9977 40 1 0.0674 2.6129 3.4685 41 1 0.7277 4.1529 2.8680 42 1 -4.0119 6.3215 5.8542 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721498289.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:35 Heat of formation + Delta-G solvation = -50.145273 kcal Electronic energy + Delta-G solvation = -26053.890519 eV Core-core repulsion = 22159.444710 eV Total energy + Delta-G solvation = -3894.445809 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.27901 -41.14417 -40.24179 -37.62610 -35.40010 -34.66358 -34.61579 -33.62405 -33.25936 -30.82769 -29.51025 -27.83560 -26.58953 -25.55709 -24.22746 -22.60693 -22.00784 -21.56029 -19.98250 -19.51849 -18.70092 -17.99759 -17.49117 -17.11532 -17.05528 -16.89824 -16.75213 -16.50864 -15.97764 -15.91148 -15.34606 -15.01860 -14.93000 -14.82501 -14.62837 -14.51145 -14.27488 -13.91421 -13.54506 -13.32270 -13.06104 -12.94718 -12.67503 -12.47896 -12.34451 -12.13822 -12.05901 -11.84999 -11.74963 -11.31536 -11.15834 -10.88917 -10.79204 -10.50596 -10.41770 -10.27150 -10.07174 -8.95808 -8.50289 -6.19904 -0.63284 0.04308 1.01231 1.32586 1.47710 1.49335 1.56435 1.60993 1.66728 2.23465 2.27420 2.73669 2.77412 2.83801 2.88260 3.24306 3.50167 3.63585 3.88460 3.89902 4.00103 4.07466 4.13255 4.27171 4.35683 4.40521 4.49963 4.55353 4.61358 4.77060 4.83382 4.93052 5.08582 5.16852 5.23136 5.26544 5.48967 5.54684 5.71929 5.85993 6.12913 6.17231 6.47063 6.77431 6.95156 6.97598 7.24004 8.62289 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010530 B = 0.002939 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.392363 B = 9523.722784 C =11693.777073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 C 0.142 3.858 4 H 0.085 0.915 5 C 0.118 3.882 6 N -0.698 5.698 7 C 0.583 3.417 8 O -0.543 6.543 9 C 0.253 3.747 10 N -0.508 5.508 11 C 0.132 3.868 12 C -0.179 4.179 13 C 0.132 3.868 14 N -0.504 5.504 15 N -0.712 5.712 16 C 0.541 3.459 17 O -0.543 6.543 18 C -0.114 4.114 19 S -0.167 6.167 20 C -0.529 4.529 21 H 0.060 0.940 22 C 0.045 3.955 23 N -0.919 5.919 24 Si 0.914 3.086 25 H -0.264 1.264 26 H -0.261 1.261 27 H -0.234 1.234 28 H 0.057 0.943 29 H 0.034 0.966 30 H 0.044 0.956 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.417 0.583 36 H 0.206 0.794 37 H 0.200 0.800 38 H 0.210 0.790 39 H 0.412 0.588 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.649 -1.869 -12.872 25.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.162 4.162 3 C 0.037 3.963 4 H 0.103 0.897 5 C -0.005 4.005 6 N -0.351 5.351 7 C 0.365 3.635 8 O -0.418 6.418 9 C -0.017 4.017 10 N -0.226 5.226 11 C -0.033 4.033 12 C -0.200 4.200 13 C -0.033 4.033 14 N -0.220 5.220 15 N -0.366 5.366 16 C 0.327 3.673 17 O -0.420 6.420 18 C -0.265 4.265 19 S 0.060 5.940 20 C -0.676 4.676 21 H 0.078 0.922 22 C -0.160 4.160 23 N -0.557 5.557 24 Si 0.736 3.264 25 H -0.189 1.189 26 H -0.185 1.185 27 H -0.158 1.158 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.115 0.885 32 H 0.099 0.901 33 H 0.108 0.892 34 H 0.116 0.884 35 H 0.254 0.746 36 H 0.222 0.778 37 H 0.217 0.783 38 H 0.226 0.774 39 H 0.249 0.751 40 H 0.125 0.875 41 H 0.129 0.871 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 20.478 -3.476 -14.515 25.340 hybrid contribution 0.337 1.578 1.800 2.418 sum 20.815 -1.897 -12.715 24.465 Atomic orbital electron populations 1.21741 0.96169 1.00751 1.01472 1.21861 0.95603 0.94439 1.04332 1.21301 0.92735 0.94997 0.87253 0.89680 1.21836 0.91768 0.82247 1.04694 1.45756 1.06296 1.11267 1.71743 1.17474 0.82851 0.85786 0.77346 1.90779 1.56851 1.44907 1.49283 1.22609 0.87027 0.94347 0.97759 1.68303 1.39866 1.02116 1.12295 1.24033 0.96534 0.93088 0.89665 1.23694 0.94689 1.04110 0.97546 1.24095 1.03368 0.86076 0.89730 1.68191 1.14757 1.26754 1.12307 1.45834 1.15782 1.57733 1.17296 1.19729 0.81946 0.77600 0.88045 1.90717 1.51686 1.58883 1.40729 1.23287 0.99929 1.03814 0.99484 1.84641 1.17273 1.72446 1.19680 1.22489 1.04888 1.41570 0.98692 0.92208 1.25570 1.00169 0.93362 0.96934 1.70022 1.27929 1.36697 1.21065 0.85865 0.79975 0.79105 0.81408 1.18876 1.18501 1.15776 0.92394 0.94673 0.93690 0.88525 0.90141 0.89192 0.88449 0.74564 0.77753 0.78319 0.77354 0.75103 0.87460 0.87145 0.91430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 8.52 71.98 0.61 -2.81 16 2 C -0.12 -2.04 5.61 30.59 0.17 -1.87 16 3 C 0.14 2.54 2.42 44.99 0.11 2.65 16 4 H 0.09 1.83 7.58 -2.39 -0.02 1.82 16 5 C 0.12 1.86 5.23 86.38 0.45 2.31 16 6 N -0.70 -13.54 5.38 -465.30 -2.50 -16.04 16 7 C 0.58 14.44 7.85 86.99 0.68 15.13 16 8 O -0.54 -16.57 16.86 -3.62 -0.06 -16.64 16 9 C 0.25 5.84 7.60 137.68 1.05 6.88 16 10 N -0.51 -9.91 9.58 -189.09 -1.81 -11.73 16 11 C 0.13 1.57 11.30 84.79 0.96 2.53 16 12 C -0.18 -1.28 10.18 22.54 0.23 -1.05 16 13 C 0.13 1.55 11.30 84.79 0.96 2.51 16 14 N -0.50 -11.03 10.13 -189.09 -1.92 -12.95 16 15 N -0.71 -14.79 4.47 -442.52 -1.98 -16.77 16 16 C 0.54 16.66 6.42 87.66 0.56 17.22 16 17 O -0.54 -20.47 13.00 -3.03 -0.04 -20.50 16 18 C -0.11 -4.07 6.16 71.24 0.44 -3.63 16 19 S -0.17 -8.11 18.55 -56.49 -1.05 -9.16 16 20 C -0.53 -30.23 10.04 67.95 0.68 -29.55 16 21 H 0.06 3.63 8.03 -2.91 -0.02 3.60 16 22 C 0.04 2.60 5.50 84.86 0.47 3.07 16 23 N -0.92 -55.51 13.97 21.65 0.30 -55.20 16 24 Si 0.91 44.29 27.74 68.60 1.90 46.20 16 25 H -0.26 -12.54 7.11 99.48 0.71 -11.83 16 26 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 27 H -0.23 -11.21 6.74 99.48 0.67 -10.54 16 28 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.03 1.03 5.65 -2.39 -0.01 1.02 16 30 H 0.04 1.20 7.85 -2.39 -0.02 1.18 16 31 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.42 8.13 7.44 -92.71 -0.69 7.44 16 36 H 0.21 1.16 8.06 -2.91 -0.02 1.14 16 37 H 0.20 -0.36 8.06 -2.91 -0.02 -0.39 16 38 H 0.21 0.78 8.06 -2.91 -0.02 0.75 16 39 H 0.41 6.80 8.60 -92.72 -0.80 6.00 16 40 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 41 H 0.11 3.65 8.14 -2.40 -0.02 3.63 16 42 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -82.09 373.37 -0.23 -82.32 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -0.45 Total: 17.10 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: 7.37 Total: 13.38 kcal Atomic # 7 Polarization: -104.79 SS G_CDS: -7.90 Total: -112.69 kcal Atomic # 8 Polarization: -37.04 SS G_CDS: -0.10 Total: -37.14 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.90 Total: 46.20 kcal Atomic # 16 Polarization: -8.11 SS G_CDS: -1.05 Total: -9.16 kcal Total: -82.09 -0.23 -82.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721498289.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.172 kcal (2) G-P(sol) polarization free energy of solvation -82.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds