Wall clock time and date at job start Tue Mar 31 2020 20:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29949 * 125.30654 * 2 1 4 4 O 1.41870 * 107.41673 * 179.97438 * 3 2 1 5 5 N 1.41881 * 106.38748 * 359.78711 * 4 3 2 6 6 C 1.29946 * 107.41210 * 0.36483 * 5 4 3 7 7 C 1.50696 * 125.30350 * 179.89643 * 6 5 4 8 8 N 1.46900 * 109.47198 * 269.69228 * 7 6 5 9 9 C 1.49488 * 110.47244 * 61.01742 * 8 7 6 10 10 C 1.56011 * 105.17244 * 122.91233 * 9 8 7 11 11 H 1.09000 * 116.86051 * 158.60160 * 10 9 8 12 12 C 1.57074 * 99.67566 * 32.20440 * 10 9 8 13 13 C 1.49707 * 111.00421 * 177.53560 * 8 7 6 14 14 H 1.09003 * 116.16404 * 76.14650 * 13 8 7 15 15 C 1.56015 * 104.85977 * 306.32790 * 13 8 7 16 16 N 1.47865 * 105.11354 * 288.60967 * 15 13 8 17 17 C 1.34778 * 126.93081 * 181.95516 * 16 15 13 18 18 O 1.21283 * 120.00104 * 179.97438 * 17 16 15 19 19 C 1.50699 * 119.99401 * 359.97438 * 17 16 15 20 20 S 1.81012 * 109.46728 * 179.97438 * 19 17 16 21 21 C 1.76202 * 99.99984 * 179.97438 * 20 19 17 22 22 H 1.07998 * 119.99938 * 0.02562 * 21 20 19 23 23 C 1.38795 * 120.00242 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99557 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00323 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46926 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.46740 * 120.00101 * 25 23 21 28 28 H 1.48497 * 109.47191 * 240.00190 * 25 23 21 29 29 H 1.08996 * 109.47170 * 269.99467 * 1 2 3 30 30 H 1.08998 * 109.47300 * 30.00118 * 1 2 3 31 31 H 1.08997 * 109.47219 * 149.99443 * 1 2 3 32 32 H 1.09004 * 109.47546 * 149.69223 * 7 6 5 33 33 H 1.09003 * 109.47201 * 29.69145 * 7 6 5 34 34 H 1.09003 * 110.83747 * 3.68647 * 9 8 7 35 35 H 1.09001 * 109.70675 * 241.55625 * 9 8 7 36 36 H 1.09004 * 112.35865 * 64.14615 * 12 10 9 37 37 H 1.09004 * 112.35169 * 191.46447 * 12 10 9 38 38 H 1.09000 * 110.31795 * 47.52625 * 15 13 8 39 39 H 1.09000 * 110.31355 * 169.60740 * 15 13 8 40 40 H 1.08994 * 109.47534 * 299.99385 * 19 17 16 41 41 H 1.08998 * 109.47314 * 60.00048 * 19 17 16 42 42 H 0.96996 * 119.99786 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2580 1.0605 0.0000 4 8 3.6081 0.6247 0.0006 5 7 3.5709 -0.7936 0.0060 6 6 2.3213 -1.1499 0.0004 7 6 1.8209 -2.5713 0.0011 8 7 1.6583 -3.0338 -1.3837 9 6 2.9685 -3.0019 -2.1028 10 6 3.1936 -4.4612 -2.6064 11 1 3.8834 -4.5937 -3.4399 12 6 1.7025 -4.8870 -2.8569 13 6 1.2185 -4.4643 -1.4236 14 1 0.1707 -4.6517 -1.1887 15 6 2.2673 -5.2296 -0.5585 16 7 3.5061 -5.2307 -1.3660 17 6 4.6804 -5.8098 -1.0466 18 8 5.6215 -5.7325 -1.8078 19 6 4.8240 -6.5534 0.2562 20 16 6.5044 -7.2124 0.3927 21 6 6.3946 -8.0080 1.9610 22 1 5.4689 -7.9809 2.5166 23 6 7.4975 -8.6705 2.4819 24 7 8.6256 -8.7039 1.8044 25 14 7.3813 -9.5133 4.1448 26 1 6.0155 -9.3303 4.6981 27 1 7.6602 -10.9632 3.9853 28 1 8.3758 -8.9170 5.0725 29 1 -0.3633 -0.0001 1.0276 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3633 -0.8899 -0.5139 32 1 0.8607 -2.6184 0.5149 33 1 2.5397 -3.2094 0.5152 34 1 3.7730 -2.7053 -1.4299 35 1 2.9077 -2.3152 -2.9472 36 1 1.2302 -4.2994 -3.6442 37 1 1.6010 -5.9582 -3.0312 38 1 2.4313 -4.7097 0.3854 39 1 1.9332 -6.2507 -0.3743 40 1 4.6317 -5.8733 1.0859 41 1 4.1084 -7.3750 0.2864 42 1 9.3962 -9.1672 2.1682 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732141580.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:15 Heat of formation + Delta-G solvation = 109.264729 kcal Electronic energy + Delta-G solvation = -27035.359415 eV Core-core repulsion = 23147.826142 eV Total energy + Delta-G solvation = -3887.533273 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.98819 -41.19668 -38.30023 -35.39371 -34.19556 -32.99844 -32.46071 -31.37185 -30.03574 -29.13903 -28.82722 -26.69566 -25.55375 -25.07432 -22.68761 -21.83882 -21.02996 -20.68256 -18.89737 -17.85446 -17.29336 -17.08647 -16.78915 -16.23765 -16.00014 -15.30879 -14.89141 -14.83817 -14.72251 -14.46742 -13.81451 -13.78816 -13.73040 -13.57864 -13.29748 -13.00053 -12.80550 -12.63871 -12.52552 -12.15668 -12.07144 -11.96793 -11.80325 -11.75733 -11.59847 -11.42598 -11.09749 -11.06311 -11.04512 -10.94038 -10.78666 -9.84415 -9.56202 -9.10597 -9.03344 -8.54929 -8.27395 -6.54170 -6.24815 -3.95929 0.23110 1.59468 2.33968 2.71886 2.79326 2.95553 3.19153 3.21600 3.28171 3.33446 3.50105 3.53258 3.90245 4.10428 4.16874 4.24210 4.36882 4.51675 4.60334 4.76181 4.77165 4.85386 4.91207 4.96605 5.03656 5.10074 5.13025 5.25056 5.34296 5.38121 5.45371 5.47503 5.52426 5.55192 5.63084 5.66231 5.82206 6.03762 6.06384 6.18131 6.32339 6.63580 7.55126 7.57049 8.31905 8.45739 9.20442 10.82711 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013913 B = 0.002865 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.053857 B = 9771.739691 C =10602.818750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.089 3.911 3 N -0.283 5.283 4 O 0.027 5.973 5 N -0.260 5.260 6 C 0.081 3.919 7 C 0.093 3.907 8 N -0.500 5.500 9 C 0.012 3.988 10 C 0.117 3.883 11 H 0.130 0.870 12 C -0.132 4.132 13 C 0.053 3.947 14 H 0.141 0.859 15 C 0.062 3.938 16 N -0.630 5.630 17 C 0.552 3.448 18 O -0.511 6.511 19 C -0.146 4.146 20 S -0.059 6.059 21 C -0.535 4.535 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.279 1.279 28 H -0.279 1.279 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.113 0.887 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.162 12.976 -5.823 28.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.094 4.094 3 N -0.029 5.029 4 O -0.115 6.115 5 N -0.004 5.004 6 C -0.103 4.103 7 C -0.035 4.035 8 N -0.225 5.225 9 C -0.116 4.116 10 C 0.013 3.987 11 H 0.147 0.853 12 C -0.170 4.170 13 C -0.055 4.055 14 H 0.158 0.842 15 C -0.062 4.062 16 N -0.369 5.369 17 C 0.341 3.659 18 O -0.384 6.384 19 C -0.297 4.297 20 S 0.167 5.833 21 C -0.683 4.683 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.746 3.254 26 H -0.196 1.196 27 H -0.205 1.205 28 H -0.205 1.205 29 H 0.112 0.888 30 H 0.107 0.893 31 H 0.119 0.881 32 H 0.132 0.868 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.107 0.893 36 H 0.114 0.886 37 H 0.108 0.892 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -21.641 14.183 -7.140 26.842 hybrid contribution -1.004 -1.498 2.531 3.108 sum -22.645 12.686 -4.608 26.362 Atomic orbital electron populations 1.20584 0.84114 1.05662 1.04604 1.24551 1.00361 0.88666 0.95793 1.79923 0.89207 1.19780 1.13989 1.93425 1.20136 1.13405 1.84486 1.80061 1.17577 0.91372 1.11369 1.24365 0.89782 0.98758 0.97368 1.21154 1.02641 0.86823 0.92922 1.65886 1.25857 1.19689 1.11051 1.24119 0.90485 0.97335 0.99689 1.23914 0.96178 0.89806 0.88833 0.85269 1.23965 0.94657 1.02306 0.96089 1.24731 0.98743 0.85828 0.96191 0.84167 1.23202 0.85549 1.02080 0.95395 1.49328 1.11133 1.55673 1.20744 1.20056 0.80366 0.77646 0.87881 1.90721 1.37353 1.58821 1.51531 1.23499 1.08109 1.01991 0.96056 1.85442 1.03838 1.67491 1.26488 1.22878 1.00979 1.39572 1.04896 0.90935 1.25000 0.94480 0.95779 0.98342 1.70027 1.01727 1.40731 1.37696 0.86108 0.78288 0.78989 0.82055 1.19629 1.20523 1.20520 0.88763 0.89330 0.88078 0.86846 0.90177 0.90580 0.89281 0.88610 0.89241 0.90513 0.90230 0.89605 0.89347 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.35 10.05 36.01 0.36 0.01 16 2 C 0.09 0.76 7.19 -82.38 -0.59 0.17 16 3 N -0.28 -3.32 12.98 33.74 0.44 -2.88 16 4 O 0.03 0.38 13.71 12.02 0.16 0.54 16 5 N -0.26 -3.49 11.90 33.74 0.40 -3.09 16 6 C 0.08 0.79 5.89 -82.39 -0.49 0.30 16 7 C 0.09 0.67 4.52 -4.98 -0.02 0.65 16 8 N -0.50 -3.64 5.42 -217.14 -1.18 -4.82 16 9 C 0.01 0.12 5.65 -0.77 0.00 0.12 16 10 C 0.12 1.27 5.23 -62.57 -0.33 0.94 16 11 H 0.13 1.54 8.06 -51.93 -0.42 1.12 16 12 C -0.13 -0.93 6.80 -22.31 -0.15 -1.08 16 13 C 0.05 0.32 5.22 -62.32 -0.33 -0.01 16 14 H 0.14 0.43 8.14 -51.93 -0.42 0.01 16 15 C 0.06 0.56 5.66 -1.68 -0.01 0.55 16 16 N -0.63 -8.45 2.95 -156.80 -0.46 -8.92 16 17 C 0.55 10.46 7.91 -10.99 -0.09 10.38 16 18 O -0.51 -11.79 16.21 5.55 0.09 -11.70 16 19 C -0.15 -2.97 5.44 36.00 0.20 -2.77 16 20 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 21 C -0.54 -15.23 9.50 30.94 0.29 -14.93 16 22 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 23 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 24 N -0.87 -26.20 13.22 55.49 0.73 -25.47 16 25 Si 0.92 21.36 29.55 -169.99 -5.02 16.34 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 29 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.10 0.23 7.78 -51.93 -0.40 -0.18 16 32 H 0.11 0.42 7.78 -51.93 -0.40 0.01 16 33 H 0.08 0.72 5.48 -51.93 -0.28 0.43 16 34 H 0.08 1.01 6.36 -51.93 -0.33 0.68 16 35 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.69 5.27 -51.93 -0.27 0.41 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 41 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 42 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 362.50 15.07 5.46 5.46 Total: -1.00 -37.03 362.50 -8.30 -45.33 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -5.46 Total: -3.30 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -1.25 Total: -3.66 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: -0.07 Total: -45.18 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.25 Total: -11.15 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -37.03 -8.30 -45.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732141580.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.593 kcal (2) G-P(sol) polarization free energy of solvation -37.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds