Wall clock time and date at job start Tue Mar 31 2020 20:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38556 * 120.01471 * 2 1 4 4 C 1.40074 * 117.81732 * 180.02562 * 3 2 1 5 5 C 1.48138 * 121.14323 * 180.02562 * 4 3 2 6 6 O 1.21509 * 119.99961 * 330.12609 * 5 4 3 7 7 N 1.34777 * 119.99563 * 150.12447 * 5 4 3 8 8 C 1.46499 * 120.00310 * 4.45550 * 7 5 4 9 9 C 1.46503 * 119.99817 * 184.45675 * 7 5 4 10 10 C 1.52996 * 109.47289 * 89.99946 * 9 7 5 11 11 N 1.46498 * 109.47333 * 180.02562 * 10 9 7 12 12 C 1.34776 * 119.99970 * 180.02562 * 11 10 9 13 13 O 1.21284 * 120.00158 * 359.97438 * 12 11 10 14 14 C 1.50698 * 119.99908 * 179.97438 * 12 11 10 15 15 S 1.81002 * 109.47249 * 179.97438 * 14 12 11 16 16 C 1.76200 * 100.00105 * 180.02562 * 15 14 12 17 17 H 1.07998 * 120.00149 * 359.97438 * 16 15 14 18 18 C 1.38799 * 119.99901 * 180.02562 * 16 15 14 19 19 N 1.31628 * 120.00085 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99783 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47580 * 59.99522 * 20 18 16 22 22 H 1.48502 * 109.46926 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47115 * 299.99279 * 20 18 16 24 24 C 1.39761 * 117.70715 * 0.02562 * 4 3 2 25 25 N 1.31894 * 119.65780 * 359.97438 * 24 4 3 26 26 N 1.28275 * 122.32876 * 359.97438 * 25 24 4 27 27 H 1.09004 * 109.47399 * 269.97274 * 1 2 3 28 28 H 1.09005 * 109.47739 * 29.97579 * 1 2 3 29 29 H 1.09004 * 109.47000 * 149.97760 * 1 2 3 30 30 H 1.08004 * 121.08664 * 0.02562 * 3 2 1 31 31 H 1.08994 * 109.46838 * 92.29054 * 8 7 5 32 32 H 1.09000 * 109.47203 * 212.28787 * 8 7 5 33 33 H 1.09002 * 109.46729 * 332.28977 * 8 7 5 34 34 H 1.08995 * 109.47282 * 210.00425 * 9 7 5 35 35 H 1.08998 * 109.46978 * 330.00119 * 9 7 5 36 36 H 1.09004 * 109.47142 * 300.00453 * 10 9 7 37 37 H 1.08998 * 109.47476 * 59.99590 * 10 9 7 38 38 H 0.97003 * 119.99985 * 359.97438 * 11 10 9 39 39 H 1.09000 * 109.47490 * 299.99599 * 14 12 11 40 40 H 1.08998 * 109.47043 * 59.99981 * 14 12 11 41 41 H 0.97002 * 119.99593 * 180.02562 * 19 18 16 42 42 H 1.08002 * 120.16957 * 180.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2000 1.1998 0.0000 4 6 3.5997 1.1460 -0.0006 5 6 4.4139 2.3836 0.0000 6 8 3.9853 3.3930 -0.5233 7 7 5.6300 2.3898 0.5810 8 6 6.1881 1.1496 1.1255 9 6 6.3938 3.6370 0.6680 10 6 6.0490 4.3562 1.9736 11 7 6.8123 5.6036 2.0603 12 6 6.6697 6.4077 3.1325 13 8 5.9092 6.0988 4.0253 14 6 7.4554 7.6905 3.2220 15 16 7.0473 8.5415 4.7665 16 6 8.0756 9.9641 4.6130 17 1 8.7014 10.0865 3.7414 18 6 8.0821 10.9268 5.6129 19 7 7.3198 10.7773 6.6754 20 14 9.1718 12.4353 5.4498 21 1 8.7934 13.1895 4.2279 22 1 8.9961 13.3039 6.6414 23 1 10.5917 12.0119 5.3503 24 6 4.2016 -0.1153 -0.0016 25 7 3.4483 -1.1979 -0.0016 26 7 2.1667 -1.1419 -0.0001 27 1 -0.3634 -0.0005 1.0277 28 1 -0.3635 0.8902 -0.5135 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6780 2.1453 0.0004 31 1 6.7950 0.6594 0.3643 32 1 6.8082 1.3798 1.9918 33 1 5.3763 0.4869 1.4254 34 1 7.4601 3.4121 0.6477 35 1 6.1414 4.2773 -0.1772 36 1 4.9826 4.5810 1.9939 37 1 6.3013 3.7159 2.8188 38 1 7.4209 5.8504 1.3464 39 1 8.5218 7.4658 3.2015 40 1 7.2027 8.3310 2.3770 41 1 7.3241 11.4504 7.3740 42 1 5.2781 -0.2031 -0.0017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001737709700.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:56 Heat of formation + Delta-G solvation = -22.618031 kcal Electronic energy + Delta-G solvation = -25212.955790 eV Core-core repulsion = 21319.703652 eV Total energy + Delta-G solvation = -3893.252139 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.56469 -41.00910 -40.47708 -37.46289 -35.96489 -35.02667 -34.58554 -34.40236 -31.83725 -29.83394 -29.43937 -27.90409 -27.65605 -26.40426 -24.84103 -23.71358 -21.95421 -20.89898 -19.84525 -19.39875 -18.17005 -17.94250 -17.81720 -17.56525 -17.07353 -16.87679 -16.74511 -16.52984 -16.04767 -15.67903 -15.48465 -15.10824 -14.76714 -14.73440 -14.59673 -14.37088 -14.15317 -13.90911 -13.60300 -13.30565 -13.22057 -13.17112 -13.09513 -12.86483 -12.62791 -12.43072 -11.96977 -11.79636 -11.75153 -11.39332 -11.12782 -11.07713 -10.83021 -10.71758 -10.28421 -10.21571 -10.00078 -8.67381 -8.34505 -6.12972 -0.82963 -0.29159 1.18846 1.33734 1.44329 1.46602 1.53626 1.57151 1.64239 2.27222 2.35037 2.36346 2.84876 2.99699 3.01685 3.25582 3.32187 3.36925 3.67842 3.75348 3.87842 3.97653 4.01792 4.14110 4.25631 4.30847 4.35053 4.51131 4.52268 4.56944 4.67239 4.70617 4.79180 4.81458 4.83884 4.94937 5.16083 5.22073 5.37125 5.41891 5.97923 6.19734 6.44885 6.71887 7.06716 7.20070 7.48616 8.74439 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.027984 B = 0.001706 C = 0.001664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.335276 B =16405.695898 C =16821.595142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.070 3.930 3 C -0.065 4.065 4 C -0.136 4.136 5 C 0.561 3.439 6 O -0.556 6.556 7 N -0.596 5.596 8 C 0.043 3.957 9 C 0.113 3.887 10 C 0.110 3.890 11 N -0.708 5.708 12 C 0.534 3.466 13 O -0.567 6.567 14 C -0.129 4.129 15 S -0.155 6.155 16 C -0.547 4.547 17 H 0.085 0.915 18 C 0.013 3.987 19 N -0.912 5.912 20 Si 0.999 3.001 21 H -0.263 1.263 22 H -0.280 1.280 23 H -0.261 1.261 24 C 0.055 3.945 25 N -0.263 5.263 26 N -0.258 5.258 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.169 0.831 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.132 0.868 35 H 0.090 0.910 36 H 0.038 0.962 37 H 0.069 0.931 38 H 0.421 0.579 39 H 0.116 0.884 40 H 0.110 0.890 41 H 0.271 0.729 42 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.405 -23.878 -18.630 30.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.075 4.075 3 C -0.094 4.094 4 C -0.150 4.150 5 C 0.349 3.651 6 O -0.435 6.435 7 N -0.328 5.328 8 C -0.098 4.098 9 C -0.010 4.010 10 C -0.016 4.016 11 N -0.363 5.363 12 C 0.320 3.680 13 O -0.445 6.445 14 C -0.280 4.280 15 S 0.072 5.928 16 C -0.694 4.694 17 H 0.103 0.897 18 C -0.192 4.192 19 N -0.548 5.548 20 Si 0.820 3.180 21 H -0.187 1.187 22 H -0.205 1.205 23 H -0.185 1.185 24 C -0.109 4.109 25 N -0.102 5.102 26 N -0.100 5.100 27 H 0.117 0.883 28 H 0.119 0.881 29 H 0.108 0.892 30 H 0.187 0.813 31 H 0.123 0.877 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.150 0.850 35 H 0.109 0.891 36 H 0.056 0.944 37 H 0.087 0.913 38 H 0.258 0.742 39 H 0.134 0.866 40 H 0.128 0.872 41 H 0.080 0.920 42 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -4.979 -25.509 -17.281 31.211 hybrid contribution 1.438 3.011 -0.862 3.446 sum -3.541 -22.498 -18.143 29.119 Atomic orbital electron populations 1.20878 0.84548 1.05553 1.05104 1.23384 1.00920 0.88997 0.94222 1.22731 0.93196 1.01360 0.92157 1.21167 0.95469 0.95292 1.03048 1.18210 0.81580 0.86907 0.78435 1.90829 1.71449 1.35155 1.46018 1.47624 1.16744 1.11171 1.57226 1.22886 1.00572 0.84799 1.01505 1.21674 0.98120 0.84998 0.96160 1.21614 0.95360 0.85189 0.99417 1.45488 1.46494 1.22013 1.22351 1.20106 0.81520 0.84675 0.81667 1.90700 1.39026 1.74556 1.40264 1.23365 1.03991 0.96882 1.03741 1.85612 1.59718 1.23974 1.23476 1.23179 1.29103 1.07469 1.09675 0.89729 1.26141 0.97334 1.01854 0.93882 1.70181 1.39097 1.36340 1.09193 0.84997 0.78375 0.76498 0.78083 1.18731 1.20503 1.18502 1.25719 1.04764 0.87506 0.92959 1.73045 0.99480 1.27800 1.09901 1.72762 1.02447 1.26159 1.08673 0.88293 0.88090 0.89190 0.81345 0.87696 0.88408 0.89746 0.84993 0.89119 0.94365 0.91312 0.74160 0.86598 0.87161 0.92016 0.76138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.82 10.19 71.23 0.73 -0.09 16 2 C 0.07 1.04 6.86 42.62 0.29 1.33 16 3 C -0.06 -0.98 9.47 22.79 0.22 -0.77 16 4 C -0.14 -2.11 5.54 -19.83 -0.11 -2.22 16 5 C 0.56 10.10 7.51 86.87 0.65 10.75 16 6 O -0.56 -14.37 16.38 -3.75 -0.06 -14.44 16 7 N -0.60 -7.16 2.87 -849.89 -2.44 -9.60 16 8 C 0.04 0.19 8.80 127.77 1.12 1.31 16 9 C 0.11 1.37 5.57 86.38 0.48 1.85 16 10 C 0.11 2.27 6.00 86.38 0.52 2.78 16 11 N -0.71 -16.29 5.56 -463.07 -2.57 -18.86 16 12 C 0.53 19.12 7.85 87.66 0.69 19.81 16 13 O -0.57 -26.18 15.86 -3.04 -0.05 -26.22 16 14 C -0.13 -4.92 6.16 71.24 0.44 -4.48 16 15 S -0.15 -8.53 20.57 -56.49 -1.16 -9.70 16 16 C -0.55 -30.87 9.50 67.95 0.65 -30.23 16 17 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 18 C 0.01 0.71 5.49 84.86 0.47 1.18 16 19 N -0.91 -55.86 13.22 21.65 0.29 -55.57 16 20 Si 1.00 43.15 29.55 68.60 2.03 45.17 16 21 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 22 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 24 C 0.06 0.70 8.83 85.05 0.75 1.45 16 25 N -0.26 -4.81 11.49 -56.53 -0.65 -5.46 16 26 N -0.26 -4.97 11.40 -47.69 -0.54 -5.51 16 27 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 28 H 0.10 0.45 8.09 -2.38 -0.02 0.43 16 29 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.17 2.23 8.03 -2.91 -0.02 2.20 16 31 H 0.10 -0.15 7.40 -2.39 -0.02 -0.17 16 32 H 0.10 0.27 8.09 -2.39 -0.02 0.25 16 33 H 0.08 0.44 4.79 -2.39 -0.01 0.43 16 34 H 0.13 0.61 8.07 -2.39 -0.02 0.59 16 35 H 0.09 1.30 7.36 -2.39 -0.02 1.28 16 36 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 37 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.42 6.21 8.47 -92.71 -0.79 5.43 16 39 H 0.12 3.86 8.14 -2.39 -0.02 3.84 16 40 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 41 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 42 H 0.22 1.12 4.68 -2.91 -0.01 1.11 16 Total: -1.00 -88.67 375.95 2.01 -86.67 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 0.28 Total: 10.83 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: 6.89 Total: 2.69 kcal Atomic # 7 Polarization: -89.09 SS G_CDS: -5.92 Total: -95.01 kcal Atomic # 8 Polarization: -40.55 SS G_CDS: -0.11 Total: -40.66 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: -8.53 SS G_CDS: -1.16 Total: -9.70 kcal Total: -88.67 2.01 -86.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737709700.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.050 kcal (2) G-P(sol) polarization free energy of solvation -88.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds