Wall clock time and date at job start Tue Mar 31 2020 20:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33319 * 126.10659 * 2 1 4 4 C 1.30854 * 109.68646 * 179.97438 * 3 2 1 5 5 N 1.34495 * 109.16493 * 359.73277 * 4 3 2 6 6 H 0.96998 * 126.47477 * 180.29481 * 5 4 3 7 7 C 1.36661 * 126.11062 * 179.97438 * 2 1 3 8 8 C 1.46766 * 126.84422 * 0.02562 * 7 2 1 9 9 O 1.21688 * 120.00012 * 0.02562 * 8 7 2 10 10 N 1.34771 * 120.00205 * 180.02562 * 8 7 2 11 11 C 1.46505 * 120.00236 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47389 * 175.01376 * 11 10 8 13 13 H 1.08996 * 112.74110 * 314.99079 * 12 11 10 14 14 C 1.53500 * 113.46502 * 85.80705 * 12 11 10 15 15 C 1.53497 * 83.34340 * 140.85000 * 14 12 11 16 16 N 1.47068 * 113.46778 * 184.24012 * 12 11 10 17 17 C 1.34777 * 136.05579 * 38.13979 * 16 12 11 18 18 O 1.21274 * 120.00143 * 5.03094 * 17 16 12 19 19 C 1.50702 * 119.99652 * 185.03345 * 17 16 12 20 20 S 1.81005 * 109.46822 * 179.97438 * 19 17 16 21 21 C 1.76201 * 99.99660 * 179.97438 * 20 19 17 22 22 H 1.07993 * 120.00274 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99690 * 179.97438 * 21 20 19 24 24 N 1.31627 * 119.99901 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 119.99770 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47309 * 60.00161 * 25 23 21 27 27 H 1.48504 * 109.46876 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47529 * 299.99876 * 25 23 21 29 29 H 1.08997 * 109.47314 * 270.01902 * 1 2 3 30 30 H 1.09000 * 109.47203 * 30.02684 * 1 2 3 31 31 H 1.09004 * 109.47224 * 150.02459 * 1 2 3 32 32 H 1.08000 * 125.41801 * 179.97438 * 4 3 2 33 33 H 0.97000 * 120.00579 * 359.97438 * 10 8 7 34 34 H 1.09006 * 109.46645 * 295.01616 * 11 10 8 35 35 H 1.09001 * 109.46850 * 55.00886 * 11 10 8 36 36 H 1.09006 * 114.20292 * 254.43458 * 14 12 11 37 37 H 1.09000 * 114.20635 * 27.25835 * 14 12 11 38 38 H 1.09000 * 113.46745 * 219.15478 * 15 14 12 39 39 H 1.08993 * 113.47042 * 88.71277 * 15 14 12 40 40 H 1.08996 * 109.47338 * 299.99782 * 19 17 16 41 41 H 1.09001 * 109.47352 * 59.99814 * 19 17 16 42 42 H 0.97006 * 119.99814 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0771 0.0000 4 6 3.5478 0.7072 0.0006 5 7 3.6122 -0.6362 0.0069 6 1 4.4189 -1.1748 0.0126 7 6 2.3124 -1.1041 0.0005 8 6 1.8822 -2.5072 0.0006 9 8 0.6963 -2.7801 -0.0003 10 7 2.8005 -3.4937 0.0016 11 6 2.3710 -4.8944 0.0012 12 6 3.5955 -5.8032 -0.1228 13 1 4.2966 -5.4640 -0.8854 14 6 4.2610 -6.1193 1.2238 15 6 4.4286 -7.5163 0.6103 16 7 3.2571 -7.2303 -0.2316 17 6 2.2966 -7.9564 -0.8371 18 8 1.4903 -7.4118 -1.5610 19 6 2.2245 -9.4452 -0.6144 20 16 0.8380 -10.1294 -1.5555 21 6 0.9859 -11.8314 -1.1243 22 1 1.7723 -12.1532 -0.4577 23 6 0.0911 -12.7585 -1.6405 24 7 -0.8683 -12.3660 -2.4517 25 14 0.2475 -14.5627 -1.1828 26 1 0.1118 -14.7138 0.2883 27 1 -0.8214 -15.3397 -1.8604 28 1 1.5760 -15.0690 -1.6119 29 1 -0.3634 0.0003 1.0276 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3634 -0.8902 -0.5135 32 1 4.3969 1.3745 0.0003 33 1 3.7458 -3.2763 0.0019 34 1 1.8480 -5.1143 0.9319 35 1 1.7021 -5.0690 -0.8415 36 1 5.1989 -5.5904 1.3939 37 1 3.5830 -6.0840 2.0766 38 1 4.2644 -8.3255 1.3220 39 1 5.3522 -7.6336 0.0436 40 1 3.1535 -9.9078 -0.9473 41 1 2.0779 -9.6472 0.4467 42 1 -1.4935 -13.0139 -2.8128 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001747693660.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:12 Heat of formation + Delta-G solvation = -5.313650 kcal Electronic energy + Delta-G solvation = -25644.661281 eV Core-core repulsion = 21752.159517 eV Total energy + Delta-G solvation = -3892.501764 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.24407 -41.64789 -40.32139 -38.92947 -36.08769 -34.61386 -34.20596 -32.44435 -32.04225 -29.84985 -29.48841 -27.98865 -27.66195 -24.74242 -23.67058 -23.19488 -22.23267 -21.09665 -20.33674 -19.90042 -19.36874 -18.04056 -17.55650 -17.31350 -16.90903 -16.87399 -16.71863 -16.42450 -15.82783 -15.78110 -15.54416 -15.36302 -14.95483 -14.67567 -14.46179 -13.97996 -13.94608 -13.83549 -13.77724 -13.42099 -13.18852 -13.15140 -13.01397 -12.88006 -12.65377 -12.43489 -11.78046 -11.73552 -11.57788 -11.15222 -11.04974 -11.01267 -10.88409 -10.39350 -10.31856 -9.81835 -9.55150 -8.71817 -8.36789 -6.16537 0.19791 1.15331 1.38976 1.42623 1.51533 1.52117 1.70199 1.82904 1.95155 2.17348 2.23102 2.25802 2.97111 3.17165 3.31550 3.53035 3.61255 3.69762 3.78075 3.95233 4.00597 4.10372 4.22691 4.28303 4.41811 4.45660 4.57576 4.64583 4.65932 4.71981 4.76461 4.89553 4.94521 4.95965 5.03142 5.16689 5.31695 5.38345 5.50478 6.16825 6.26751 6.41911 6.58296 6.90887 7.00908 7.03654 7.08973 8.72299 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.023791 B = 0.001993 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.638908 B =14045.157953 C =14970.999025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.076 3.924 3 N -0.539 5.539 4 C 0.247 3.753 5 N -0.536 5.536 6 H 0.443 0.557 7 C -0.106 4.106 8 C 0.590 3.410 9 O -0.566 6.566 10 N -0.702 5.702 11 C 0.121 3.879 12 C 0.120 3.880 13 H 0.124 0.876 14 C -0.124 4.124 15 C 0.094 3.906 16 N -0.651 5.651 17 C 0.556 3.444 18 O -0.566 6.566 19 C -0.116 4.116 20 S -0.156 6.156 21 C -0.546 4.546 22 H 0.084 0.916 23 C 0.011 3.989 24 N -0.912 5.912 25 Si 1.001 2.999 26 H -0.261 1.261 27 H -0.279 1.279 28 H -0.260 1.260 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.268 0.732 33 H 0.416 0.584 34 H 0.061 0.939 35 H 0.040 0.960 36 H 0.141 0.859 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.116 0.884 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.488 23.184 11.192 34.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.058 4.058 3 N -0.260 5.260 4 C -0.037 4.037 5 N -0.142 5.142 6 H 0.286 0.714 7 C -0.222 4.222 8 C 0.378 3.622 9 O -0.444 6.444 10 N -0.355 5.355 11 C -0.004 4.004 12 C 0.017 3.983 13 H 0.141 0.859 14 C -0.161 4.161 15 C -0.027 4.027 16 N -0.388 5.388 17 C 0.345 3.655 18 O -0.444 6.444 19 C -0.267 4.267 20 S 0.071 5.929 21 C -0.694 4.694 22 H 0.102 0.898 23 C -0.193 4.193 24 N -0.548 5.548 25 Si 0.823 3.177 26 H -0.186 1.186 27 H -0.204 1.204 28 H -0.184 1.184 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.283 0.717 33 H 0.254 0.746 34 H 0.079 0.921 35 H 0.059 0.941 36 H 0.159 0.841 37 H 0.112 0.888 38 H 0.106 0.894 39 H 0.133 0.867 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 19.867 24.343 9.921 32.950 hybrid contribution 1.172 -2.722 0.476 3.001 sum 21.039 21.621 10.397 31.910 Atomic orbital electron populations 1.20242 0.87269 1.03098 1.03039 1.21247 0.97285 0.87718 0.99557 1.70149 1.02287 1.30627 1.22927 1.26164 0.97444 0.82416 0.97709 1.43168 1.07039 1.08976 1.55063 0.71394 1.20479 0.86249 0.93401 1.22051 1.17125 0.85482 0.83637 0.76000 1.90871 1.18337 1.83575 1.51621 1.45353 1.09936 1.04817 1.75372 1.21357 0.97432 0.80062 1.01527 1.23184 0.94223 0.80715 1.00183 0.85869 1.23578 1.03195 0.95321 0.94033 1.23368 0.87557 0.99768 0.91992 1.49813 1.27522 1.09099 1.52408 1.19714 0.80027 0.87898 0.77854 1.90713 1.42478 1.72913 1.38304 1.23246 1.04082 0.94225 1.05180 1.85673 1.37681 1.06645 1.62881 1.23149 1.19176 0.92382 1.34683 0.89799 1.26191 0.93769 1.05176 0.94199 1.70191 1.16562 1.37002 1.31065 0.84965 0.78498 0.75386 0.78896 1.18588 1.20413 1.18419 0.90526 0.90285 0.91264 0.71667 0.74622 0.92085 0.94112 0.84075 0.88773 0.89391 0.86650 0.87488 0.87747 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.81 9.88 71.23 0.70 -1.11 16 2 C 0.08 1.70 7.15 41.96 0.30 2.00 16 3 N -0.54 -10.07 11.20 -187.60 -2.10 -12.17 16 4 C 0.25 1.96 13.01 180.33 2.35 4.30 16 5 N -0.54 -3.77 6.07 -188.05 -1.14 -4.91 16 6 H 0.44 -1.03 8.32 -92.71 -0.77 -1.80 16 7 C -0.11 -1.96 7.08 40.01 0.28 -1.67 16 8 C 0.59 13.99 7.79 86.47 0.67 14.66 16 9 O -0.57 -19.51 14.81 -4.31 -0.06 -19.58 16 10 N -0.70 -11.31 5.55 -466.99 -2.59 -13.90 16 11 C 0.12 2.84 5.47 86.38 0.47 3.31 16 12 C 0.12 1.91 4.07 41.79 0.17 2.08 16 13 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 14 C -0.12 -0.87 8.02 30.93 0.25 -0.62 16 15 C 0.09 1.13 8.42 83.18 0.70 1.83 16 16 N -0.65 -16.11 3.57 -833.70 -2.97 -19.09 16 17 C 0.56 21.48 7.97 87.66 0.70 22.18 16 18 O -0.57 -27.80 15.46 -3.01 -0.05 -27.85 16 19 C -0.12 -4.77 5.99 71.24 0.43 -4.35 16 20 S -0.16 -8.93 20.57 -56.49 -1.16 -10.09 16 21 C -0.55 -31.62 9.50 67.96 0.65 -30.98 16 22 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 23 C 0.01 0.65 5.49 84.86 0.47 1.12 16 24 N -0.91 -57.03 13.22 21.65 0.29 -56.75 16 25 Si 1.00 43.87 29.55 68.60 2.03 45.89 16 26 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 27 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 28 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 29 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.07 1.88 6.48 -2.38 -0.02 1.86 16 32 H 0.27 -0.97 8.06 -2.91 -0.02 -1.00 16 33 H 0.42 2.30 7.72 -92.71 -0.72 1.58 16 34 H 0.06 1.61 7.89 -2.38 -0.02 1.59 16 35 H 0.04 1.43 7.14 -2.39 -0.02 1.41 16 36 H 0.14 -0.29 8.14 -2.38 -0.02 -0.31 16 37 H 0.09 0.86 7.95 -2.39 -0.02 0.84 16 38 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 41 H 0.10 3.92 8.14 -2.39 -0.02 3.90 16 42 H 0.27 15.77 8.31 -92.70 -0.77 15.00 16 Total: -1.00 -99.18 375.96 -0.04 -99.23 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -0.41 Total: 6.44 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: 8.13 Total: 12.77 kcal Atomic # 7 Polarization: -98.30 SS G_CDS: -8.52 Total: -106.82 kcal Atomic # 8 Polarization: -47.31 SS G_CDS: -0.11 Total: -47.42 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: -8.93 SS G_CDS: -1.16 Total: -10.09 kcal Total: -99.18 -0.04 -99.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001747693660.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.913 kcal (2) G-P(sol) polarization free energy of solvation -99.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds