Wall clock time and date at job start Tue Mar 31 2020 20:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 110.64113 * 2 1 4 4 C 1.34780 * 119.99847 * 300.70070 * 3 2 1 5 5 O 1.21284 * 119.99978 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00074 * 180.02562 * 4 3 2 7 7 S 1.80995 * 109.47136 * 179.97438 * 6 4 3 8 8 C 1.76206 * 99.99908 * 179.97438 * 7 6 4 9 9 H 1.07993 * 119.99613 * 0.02562 * 8 7 6 10 10 C 1.38802 * 119.99933 * 179.97438 * 8 7 6 11 11 N 1.31632 * 119.99660 * 0.02562 * 10 8 7 12 12 Si 1.86791 * 119.99871 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47330 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.46829 * 120.00235 * 12 10 8 15 15 H 1.48496 * 109.47347 * 239.99887 * 12 10 8 16 16 C 1.55157 * 110.71889 * 123.13872 * 2 1 3 17 17 C 1.55388 * 101.36602 * 153.95132 * 16 2 1 18 18 N 1.47421 * 104.87112 * 323.01547 * 17 16 2 19 19 C 1.34778 * 125.64546 * 204.09424 * 18 17 16 20 20 O 1.21607 * 119.99861 * 174.19342 * 19 18 17 21 21 C 1.47427 * 120.00283 * 354.19903 * 19 18 17 22 22 C 1.41288 * 126.41593 * 353.11792 * 21 19 18 23 23 N 1.30444 * 108.02593 * 179.97438 * 22 21 19 24 24 N 1.39932 * 108.89836 * 359.97438 * 23 22 21 25 25 H 0.96995 * 125.75774 * 180.02562 * 24 23 22 26 26 C 1.34268 * 108.49068 * 359.75551 * 24 23 22 27 27 C 1.47022 * 108.70541 * 24.13409 * 18 17 16 28 28 H 1.09001 * 109.47332 * 59.30258 * 1 2 3 29 29 H 1.09001 * 109.47395 * 179.30026 * 1 2 3 30 30 H 1.09000 * 109.47425 * 299.30331 * 1 2 3 31 31 H 0.97000 * 120.00111 * 120.69776 * 3 2 1 32 32 H 1.09010 * 109.46669 * 299.99576 * 6 4 3 33 33 H 1.08999 * 109.47383 * 59.99126 * 6 4 3 34 34 H 0.96999 * 119.99795 * 179.97438 * 11 10 8 35 35 H 1.09005 * 111.00446 * 272.12059 * 16 2 1 36 36 H 1.08992 * 111.00716 * 35.96808 * 16 2 1 37 37 H 1.09000 * 110.34160 * 204.16461 * 17 16 2 38 38 H 1.08999 * 110.44696 * 81.91839 * 17 16 2 39 39 H 1.08005 * 125.98519 * 0.02562 * 22 21 19 40 40 H 1.08001 * 126.29307 * 180.24281 * 26 24 23 41 41 H 1.08996 * 109.88112 * 239.51872 * 27 18 17 42 42 H 1.09005 * 110.00824 * 118.42841 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0464 1.3710 0.0000 4 6 1.7262 2.2117 -1.0037 5 8 1.0110 1.8330 -1.9070 6 6 2.2579 3.6218 -1.0040 7 16 1.6558 4.4932 -2.4716 8 6 2.4068 6.0676 -2.2222 9 1 3.0235 6.2399 -1.3526 10 6 2.2066 7.0858 -3.1440 11 7 1.4553 6.8755 -4.2042 12 14 3.0023 8.7550 -2.8793 13 1 3.7910 8.7335 -1.6213 14 1 3.9008 9.0617 -4.0212 15 1 1.9480 9.7966 -2.7854 16 6 2.0789 -0.7933 1.2152 17 6 3.4673 -1.2454 0.6839 18 7 3.2471 -1.5461 -0.7425 19 6 3.9958 -2.3767 -1.4948 20 8 3.6603 -2.6327 -2.6353 21 6 5.2215 -2.9749 -0.9352 22 6 5.8091 -2.6703 0.3131 23 7 6.8776 -3.4065 0.4467 24 7 7.0225 -4.2059 -0.6926 25 1 7.7346 -4.8456 -0.8493 26 6 6.0063 -3.9426 -1.5296 27 6 2.0760 -0.7891 -1.2085 28 1 -0.3634 0.5246 -0.8837 29 1 -0.3634 -1.0276 -0.0126 30 1 -0.3634 0.5030 0.8961 31 1 2.6187 1.6737 0.7223 32 1 1.9157 4.1393 -0.1077 33 1 3.3476 3.5992 -1.0167 34 1 1.3151 7.5871 -4.8482 35 1 2.1819 -0.1489 2.0883 36 1 1.4469 -1.6528 1.4385 37 1 3.8031 -2.1377 1.2123 38 1 4.1969 -0.4431 0.7942 39 1 5.4380 -1.9541 1.0313 40 1 5.8358 -4.4014 -2.4924 41 1 1.3141 -1.4754 -1.5780 42 1 2.3687 -0.0993 -2.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001748070898.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:42 Heat of formation + Delta-G solvation = -13.047120 kcal Electronic energy + Delta-G solvation = -26550.042406 eV Core-core repulsion = 22657.205293 eV Total energy + Delta-G solvation = -3892.837113 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.45414 -41.50562 -40.06705 -38.46280 -35.41124 -34.57557 -33.23509 -32.53839 -31.32990 -30.78511 -29.93210 -27.73361 -27.64464 -24.90179 -23.50565 -22.63249 -22.28028 -20.69734 -20.55769 -19.84674 -19.22501 -17.79315 -17.63121 -17.23870 -16.87563 -16.75304 -16.40840 -16.19824 -15.86745 -15.59515 -15.46727 -14.82510 -14.71448 -14.65194 -14.43431 -14.10016 -13.89657 -13.85221 -13.39343 -13.16969 -13.13779 -13.07902 -12.90323 -12.60291 -12.37810 -12.26633 -12.20385 -11.80687 -11.69151 -11.15236 -11.02573 -10.86834 -10.68375 -10.24123 -10.14525 -10.01706 -9.59214 -8.64633 -8.34037 -6.11324 0.49590 1.11501 1.28291 1.41547 1.48165 1.58717 1.65756 1.73051 2.03085 2.25758 2.30566 2.37345 3.00243 3.27546 3.34793 3.45569 3.69788 3.87285 3.92554 3.99913 4.02481 4.23677 4.32631 4.35404 4.37390 4.52502 4.54442 4.61104 4.70591 4.74278 4.83234 4.84675 5.07065 5.10939 5.19588 5.35076 5.38854 5.42824 5.61105 6.18280 6.20763 6.43509 6.52412 6.60084 7.07501 7.14768 7.32921 8.75373 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014974 B = 0.002513 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.425225 B =11140.975631 C =11939.628019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.168 3.832 3 N -0.701 5.701 4 C 0.535 3.465 5 O -0.554 6.554 6 C -0.129 4.129 7 S -0.154 6.154 8 C -0.543 4.543 9 H 0.083 0.917 10 C 0.011 3.989 11 N -0.912 5.912 12 Si 0.999 3.001 13 H -0.255 1.255 14 H -0.276 1.276 15 H -0.274 1.274 16 C -0.116 4.116 17 C 0.080 3.920 18 N -0.612 5.612 19 C 0.599 3.401 20 O -0.600 6.600 21 C -0.316 4.316 22 C 0.081 3.919 23 N -0.317 5.317 24 N -0.448 5.448 25 H 0.460 0.540 26 C 0.145 3.855 27 C 0.109 3.891 28 H 0.043 0.957 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.419 0.581 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.270 0.730 35 H 0.131 0.869 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.091 0.909 39 H 0.223 0.777 40 H 0.210 0.790 41 H 0.063 0.937 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.300 -22.789 18.765 30.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.081 3.919 3 N -0.356 5.356 4 C 0.321 3.679 5 O -0.431 6.431 6 C -0.280 4.280 7 S 0.073 5.927 8 C -0.691 4.691 9 H 0.101 0.899 10 C -0.194 4.194 11 N -0.549 5.549 12 Si 0.821 3.179 13 H -0.179 1.179 14 H -0.202 1.202 15 H -0.199 1.199 16 C -0.154 4.154 17 C -0.041 4.041 18 N -0.344 5.344 19 C 0.391 3.609 20 O -0.482 6.482 21 C -0.331 4.331 22 C -0.106 4.106 23 N -0.138 5.138 24 N -0.155 5.155 25 H 0.309 0.691 26 C -0.010 4.010 27 C -0.016 4.016 28 H 0.062 0.938 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.257 0.743 32 H 0.131 0.869 33 H 0.123 0.877 34 H 0.079 0.921 35 H 0.149 0.851 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.109 0.891 39 H 0.239 0.761 40 H 0.227 0.773 41 H 0.081 0.919 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 8.928 -23.843 17.289 30.775 hybrid contribution 0.794 1.604 -0.271 1.810 sum 9.722 -22.239 17.018 29.643 Atomic orbital electron populations 1.22063 0.92710 1.03412 1.03077 1.21268 0.94603 0.80778 0.95276 1.45755 1.52918 1.11153 1.25769 1.20013 0.79655 0.86481 0.81748 1.90696 1.37791 1.77462 1.37139 1.23375 1.04860 0.95662 1.04110 1.85628 1.67473 1.10653 1.28965 1.23232 1.35872 0.97631 1.12336 0.89878 1.26145 0.95605 1.03646 0.93968 1.70199 1.37791 1.34923 1.11999 0.84901 0.77978 0.76243 0.78800 1.17856 1.20168 1.19900 1.23307 0.95034 1.01049 0.95962 1.23167 0.98964 1.02793 0.79224 1.48229 1.29341 1.44068 1.12761 1.17379 0.82285 0.77399 0.83810 1.90769 1.73366 1.63604 1.20509 1.20151 1.02466 1.10048 1.00427 1.25006 0.91622 0.98006 0.95977 1.77157 1.20802 1.09280 1.06522 1.46273 1.22487 1.33462 1.13251 0.69142 1.23373 0.86803 0.94204 0.96578 1.22192 0.87898 0.93978 0.97488 0.93825 0.89848 0.90097 0.74252 0.86949 0.87725 0.92078 0.85097 0.86970 0.86941 0.89083 0.76102 0.77349 0.91880 0.94627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 8.41 71.98 0.61 -2.63 16 2 C 0.17 3.25 0.80 4.79 0.00 3.25 16 3 N -0.70 -15.30 5.15 -417.57 -2.15 -17.45 16 4 C 0.54 18.71 7.06 87.66 0.62 19.33 16 5 O -0.55 -24.70 12.81 -3.04 -0.04 -24.74 16 6 C -0.13 -4.95 6.16 71.24 0.44 -4.51 16 7 S -0.15 -8.58 20.57 -56.49 -1.16 -9.74 16 8 C -0.54 -31.00 9.50 67.95 0.65 -30.35 16 9 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 10 C 0.01 0.62 5.49 84.86 0.47 1.09 16 11 N -0.91 -56.64 13.22 21.65 0.29 -56.35 16 12 Si 1.00 43.81 29.55 68.60 2.03 45.84 16 13 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 14 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 15 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 16 C -0.12 -0.93 6.11 32.15 0.20 -0.73 16 17 C 0.08 0.81 5.09 87.02 0.44 1.25 16 18 N -0.61 -13.47 3.33 -814.71 -2.71 -16.18 16 19 C 0.60 16.00 7.83 86.66 0.68 16.68 16 20 O -0.60 -21.76 17.24 -4.05 -0.07 -21.83 16 21 C -0.32 -6.02 6.05 -20.15 -0.12 -6.14 16 22 C 0.08 1.16 10.28 85.65 0.88 2.04 16 23 N -0.32 -4.84 12.63 -56.27 -0.71 -5.55 16 24 N -0.45 -4.86 7.29 -56.31 -0.41 -5.27 16 25 H 0.46 1.61 8.96 -213.43 -1.91 -0.30 16 26 C 0.15 2.05 11.83 84.28 1.00 3.05 16 27 C 0.11 2.98 5.79 86.73 0.50 3.48 16 28 H 0.04 1.33 6.21 -2.39 -0.01 1.31 16 29 H 0.08 1.41 8.12 -2.39 -0.02 1.39 16 30 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.42 5.70 8.48 -92.71 -0.79 4.91 16 32 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 33 H 0.10 3.68 8.14 -2.40 -0.02 3.66 16 34 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 35 H 0.13 0.22 8.06 -2.38 -0.02 0.20 16 36 H 0.11 0.64 8.05 -2.39 -0.02 0.62 16 37 H 0.11 0.62 5.94 -2.39 -0.01 0.61 16 38 H 0.09 0.67 7.71 -2.39 -0.02 0.66 16 39 H 0.22 1.69 4.86 -2.91 -0.01 1.67 16 40 H 0.21 2.10 8.06 -2.91 -0.02 2.07 16 41 H 0.06 1.87 7.80 -2.39 -0.02 1.85 16 42 H 0.04 1.33 6.67 -2.38 -0.02 1.31 16 Total: -1.00 -92.72 362.98 -0.19 -92.91 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -1.61 Total: 12.55 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 6.35 Total: 5.82 kcal Atomic # 7 Polarization: -95.10 SS G_CDS: -5.69 Total: -100.80 kcal Atomic # 8 Polarization: -46.47 SS G_CDS: -0.11 Total: -46.58 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.74 kcal Total: -92.72 -0.19 -92.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001748070898.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.865 kcal (2) G-P(sol) polarization free energy of solvation -92.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds