Wall clock time and date at job start Tue Mar 31 2020 21:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47452 * 2 1 4 4 N 1.30943 * 122.90112 * 270.00548 * 3 2 1 5 5 C 1.29431 * 117.36235 * 180.02562 * 4 3 2 6 6 S 1.70955 * 110.39136 * 359.71881 * 5 4 3 7 7 C 1.35657 * 122.90440 * 89.99872 * 3 2 1 8 8 C 1.46680 * 126.13288 * 0.02562 * 7 3 2 9 9 O 1.21688 * 119.99984 * 359.97438 * 8 7 3 10 10 N 1.34777 * 120.00113 * 180.02562 * 8 7 3 11 11 C 1.46502 * 119.99942 * 180.02562 * 10 8 7 12 12 C 1.53513 * 114.16704 * 204.99849 * 11 10 8 13 13 N 1.47484 * 87.93060 * 220.32609 * 12 11 10 14 14 C 1.46895 * 110.99756 * 138.70311 * 13 12 11 15 15 C 1.50706 * 109.47182 * 170.00145 * 14 13 12 16 16 O 1.21297 * 119.99667 * 0.02562 * 15 14 13 17 17 N 1.34773 * 120.00081 * 179.72734 * 15 14 13 18 18 C 1.37095 * 119.99878 * 180.02562 * 17 15 14 19 19 H 1.08004 * 120.00160 * 359.97438 * 18 17 15 20 20 C 1.38950 * 120.00380 * 179.97438 * 18 17 15 21 21 N 1.31404 * 120.00261 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99599 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47644 * 89.99834 * 22 20 18 24 24 H 1.48506 * 109.47143 * 209.99780 * 22 20 18 25 25 H 1.48501 * 109.47120 * 329.99495 * 22 20 18 26 26 C 1.47477 * 87.83167 * 27.01125 * 13 12 11 27 27 H 1.08994 * 109.46846 * 59.99667 * 1 2 3 28 28 H 1.08996 * 109.47276 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46532 * 300.00086 * 1 2 3 30 30 H 1.08998 * 109.47184 * 239.99786 * 2 1 3 31 31 H 1.09004 * 109.47197 * 119.99908 * 2 1 3 32 32 H 1.08000 * 124.80475 * 179.97438 * 5 4 3 33 33 H 0.96992 * 120.00120 * 359.97438 * 10 8 7 34 34 H 1.09003 * 113.37948 * 338.07305 * 11 10 8 35 35 H 1.09005 * 113.47855 * 105.56484 * 12 11 10 36 36 H 1.08997 * 113.53455 * 335.10065 * 12 11 10 37 37 H 1.09001 * 109.47613 * 50.00491 * 14 13 12 38 38 H 1.08998 * 109.47678 * 290.00386 * 14 13 12 39 39 H 0.96998 * 120.00525 * 359.97438 * 17 15 14 40 40 H 0.97009 * 120.00065 * 180.02562 * 21 20 18 41 41 H 1.09000 * 113.48071 * 87.76093 * 26 13 12 42 42 H 1.09004 * 113.47566 * 218.21901 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2695 2.0914 -1.0994 5 6 2.6995 3.3058 -0.9745 6 16 2.8388 3.7213 0.6779 7 6 2.2781 2.1156 1.1389 8 6 2.1036 1.6207 2.5087 9 8 1.7030 0.4876 2.6998 10 7 2.3860 2.4212 3.5555 11 6 2.2123 1.9266 4.9236 12 6 1.9736 3.0291 5.9648 13 7 2.8546 2.2807 6.8807 14 6 3.7466 3.1896 7.6129 15 6 4.4526 2.4285 8.7054 16 8 4.2344 1.2452 8.8586 17 7 5.3308 3.0614 9.5084 18 6 5.9733 2.3689 10.5019 19 1 5.7755 1.3163 10.6414 20 6 6.8792 3.0211 11.3294 21 7 7.4947 2.3575 12.2820 22 14 7.2208 4.8418 11.0886 23 1 6.2753 5.6363 11.9130 24 1 8.6142 5.1432 11.5046 25 1 7.0449 5.1932 9.6565 26 6 3.5265 1.7256 5.6910 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 2.9329 3.9648 -1.7976 33 1 2.7050 3.3244 3.4032 34 1 1.5205 1.0873 4.9955 35 1 0.9402 3.0869 6.3070 36 1 2.3753 3.9990 5.6717 37 1 3.1613 3.9972 8.0526 38 1 4.4833 3.6070 6.9265 39 1 5.5088 4.0066 9.3829 40 1 8.1268 2.8129 12.8600 41 1 4.3432 2.3472 5.3238 42 1 3.8094 0.6787 5.8009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753378468.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:12 Heat of formation + Delta-G solvation = 23.825722 kcal Electronic energy + Delta-G solvation = -25858.834078 eV Core-core repulsion = 21967.595892 eV Total energy + Delta-G solvation = -3891.238186 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.02974 -40.41505 -38.98829 -37.89484 -34.50515 -33.91462 -33.72602 -31.69954 -30.80616 -29.60257 -26.72848 -26.05630 -25.57751 -23.82613 -23.46432 -21.94785 -20.67656 -19.50925 -19.41578 -18.83500 -18.39127 -17.17319 -16.71304 -16.19591 -15.81335 -15.67553 -15.34180 -14.98487 -14.84768 -14.59177 -14.45119 -14.26506 -13.94731 -13.53465 -13.39754 -12.96232 -12.79924 -12.77427 -12.49672 -12.29524 -12.20702 -11.74442 -11.64924 -11.37392 -11.21756 -11.19639 -10.80163 -10.61660 -10.49226 -10.12960 -10.05147 -9.98159 -9.57260 -9.43914 -9.28479 -8.99686 -8.37597 -8.18311 -6.31165 -3.82648 -0.23606 0.69050 1.05792 2.00264 2.64137 2.75830 2.99670 3.04774 3.13135 3.64932 3.72147 3.90231 4.08992 4.22898 4.36704 4.52246 4.62410 4.65178 4.70381 5.04074 5.07413 5.12936 5.15835 5.16785 5.20785 5.42911 5.44937 5.52712 5.62037 5.68768 5.72335 5.86364 5.90958 5.93819 6.03286 6.14651 6.33138 6.91781 7.00571 7.15321 7.57441 7.75300 8.14003 8.60025 8.95400 9.41972 9.83529 10.82073 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.021805 B = 0.002077 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.789584 B =13477.841340 C =14201.477383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.063 4.063 3 C 0.152 3.848 4 N -0.473 5.473 5 C 0.040 3.960 6 S 0.157 5.843 7 C -0.294 4.294 8 C 0.599 3.401 9 O -0.512 6.512 10 N -0.713 5.713 11 C 0.120 3.880 12 C -0.014 4.014 13 N -0.432 5.432 14 C 0.008 3.992 15 C 0.455 3.545 16 O -0.554 6.554 17 N -0.594 5.594 18 C -0.304 4.304 19 H 0.120 0.880 20 C 0.040 3.960 21 N -0.882 5.882 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.271 1.271 26 C -0.010 4.010 27 H 0.051 0.949 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.207 0.793 33 H 0.397 0.603 34 H 0.135 0.865 35 H 0.096 0.904 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.061 0.939 39 H 0.369 0.631 40 H 0.273 0.727 41 H 0.071 0.929 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.255 8.406 -27.962 31.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.103 4.103 3 C 0.014 3.986 4 N -0.186 5.186 5 C -0.256 4.256 6 S 0.412 5.588 7 C -0.418 4.418 8 C 0.385 3.615 9 O -0.389 6.389 10 N -0.364 5.364 11 C 0.015 3.985 12 C -0.144 4.144 13 N -0.154 5.154 14 C -0.125 4.125 15 C 0.240 3.760 16 O -0.435 6.435 17 N -0.234 5.234 18 C -0.433 4.433 19 H 0.137 0.863 20 C -0.163 4.163 21 N -0.522 5.522 22 Si 0.707 3.293 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.196 1.196 26 C -0.140 4.140 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.125 0.875 32 H 0.223 0.777 33 H 0.232 0.768 34 H 0.153 0.847 35 H 0.115 0.885 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.079 0.921 39 H 0.202 0.798 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.538 7.105 -26.993 30.203 hybrid contribution 0.946 2.081 -0.741 2.403 sum -10.592 9.186 -27.735 31.077 Atomic orbital electron populations 1.21598 0.93669 1.02387 1.01758 1.20477 0.96853 0.88149 1.04798 1.20798 0.94665 0.98292 0.84868 1.66133 1.15075 1.06133 1.31250 1.28760 1.00569 0.95976 1.00251 1.83944 1.59140 1.11903 1.03855 1.25522 1.18283 0.98895 0.99134 1.16670 0.77367 0.85176 0.82323 1.90826 1.45467 1.17850 1.84737 1.45872 1.68011 1.16652 1.05895 1.22774 0.99109 0.98737 0.77892 1.24339 1.01165 0.96240 0.92632 1.68807 1.12466 1.21383 1.12780 1.22546 0.96458 0.95824 0.97629 1.19522 0.83334 0.88364 0.84818 1.90582 1.65382 1.15384 1.72115 1.42208 1.39440 1.10582 1.31143 1.19427 1.19580 0.97437 1.06808 0.86284 1.25038 0.96743 0.98370 0.96102 1.69621 1.27615 1.36339 1.18607 0.86666 0.79019 0.85276 0.78343 1.19624 1.20201 1.19641 1.24439 0.95939 1.03736 0.89860 0.92941 0.91612 0.92391 0.90208 0.87482 0.77656 0.76826 0.84710 0.88543 0.91104 0.89040 0.92115 0.79826 0.91629 0.91128 0.88437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.90 37.16 0.37 -0.82 16 2 C -0.06 -0.60 5.75 -27.88 -0.16 -0.76 16 3 C 0.15 1.51 6.04 -83.89 -0.51 1.00 16 4 N -0.47 -4.32 10.50 -11.53 -0.12 -4.44 16 5 C 0.04 0.24 12.22 51.75 0.63 0.87 16 6 S 0.16 0.91 22.35 -107.50 -2.40 -1.50 16 7 C -0.29 -2.75 6.48 -37.10 -0.24 -2.99 16 8 C 0.60 6.55 7.78 -12.85 -0.10 6.45 16 9 O -0.51 -7.03 13.86 5.20 0.07 -6.95 16 10 N -0.71 -6.52 5.38 -54.85 -0.30 -6.82 16 11 C 0.12 1.32 4.59 -67.72 -0.31 1.01 16 12 C -0.01 -0.14 7.45 -7.55 -0.06 -0.20 16 13 N -0.43 -6.59 5.82 -246.13 -1.43 -8.02 16 14 C 0.01 0.12 5.30 -4.98 -0.03 0.10 16 15 C 0.45 10.35 7.85 -10.98 -0.09 10.26 16 16 O -0.55 -15.20 16.01 5.54 0.09 -15.12 16 17 N -0.59 -14.09 5.09 -10.96 -0.06 -14.14 16 18 C -0.30 -8.62 10.16 -14.93 -0.15 -8.77 16 19 H 0.12 3.88 7.39 -52.48 -0.39 3.49 16 20 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 21 N -0.88 -25.81 13.96 55.50 0.77 -25.03 16 22 Si 0.88 19.20 27.74 -169.99 -4.71 14.49 16 23 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 24 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 26 C -0.01 -0.13 7.52 -7.56 -0.06 -0.19 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.11 1.17 6.01 -51.93 -0.31 0.86 16 32 H 0.21 0.45 8.06 -52.49 -0.42 0.02 16 33 H 0.40 2.68 7.94 -40.82 -0.32 2.35 16 34 H 0.14 1.68 7.45 -51.93 -0.39 1.29 16 35 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.57 7.90 -51.93 -0.41 0.16 16 37 H 0.09 1.24 8.08 -51.93 -0.42 0.82 16 38 H 0.06 0.82 7.30 -51.93 -0.38 0.44 16 39 H 0.37 7.60 5.76 -40.82 -0.24 7.36 16 40 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.07 0.85 7.42 -51.93 -0.39 0.47 16 42 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 LS Contribution 368.45 15.07 5.55 5.55 Total: -1.00 -35.93 368.45 -8.69 -44.62 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -5.37 Total: 10.40 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: -0.79 Total: 6.96 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: -1.13 Total: -58.45 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: 0.16 Total: -22.07 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.71 Total: 14.49 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.40 Total: -1.50 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.93 -8.69 -44.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753378468.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.449 kcal (2) G-P(sol) polarization free energy of solvation -35.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds