Wall clock time and date at job start Tue Mar 31 2020 20:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35364 * 127.24802 * 2 1 4 4 N 1.35035 * 107.22677 * 180.02562 * 3 2 1 5 5 H 0.97003 * 124.88031 * 180.02562 * 4 3 2 6 6 N 1.28470 * 110.23101 * 359.72190 * 4 3 2 7 7 C 1.31811 * 110.07174 * 0.46268 * 6 4 3 8 8 C 1.47710 * 126.51577 * 179.81970 * 7 6 4 9 9 O 1.21573 * 119.99890 * 179.68618 * 8 7 6 10 10 N 1.34783 * 119.99884 * 359.68005 * 8 7 6 11 11 C 1.46499 * 119.99531 * 180.02562 * 10 8 7 12 12 H 1.08997 * 112.91343 * 23.75029 * 11 10 8 13 13 C 1.53781 * 113.61225 * 155.00207 * 11 10 8 14 14 C 1.53786 * 87.17350 * 139.93836 * 13 11 10 15 15 H 1.09000 * 113.61138 * 220.06261 * 14 13 11 16 16 N 1.46496 * 113.61518 * 89.15486 * 14 13 11 17 17 C 1.34779 * 119.99390 * 154.99856 * 16 14 13 18 18 O 1.21277 * 120.00682 * 0.02562 * 17 16 14 19 19 C 1.50703 * 119.99369 * 180.02562 * 17 16 14 20 20 S 1.81000 * 109.46911 * 180.02562 * 19 17 16 21 21 C 1.76196 * 99.99957 * 179.97438 * 20 19 17 22 22 H 1.07999 * 120.00635 * 359.97438 * 21 20 19 23 23 C 1.38800 * 120.00163 * 179.97438 * 21 20 19 24 24 N 1.31633 * 120.00015 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00547 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46626 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.47188 * 119.99849 * 25 23 21 28 28 H 1.48502 * 109.47336 * 240.00399 * 25 23 21 29 29 C 1.53782 * 113.61191 * 252.49880 * 11 10 8 30 30 H 1.09006 * 109.47516 * 270.00148 * 1 2 3 31 31 H 1.09005 * 109.47568 * 29.99891 * 1 2 3 32 32 H 1.09005 * 109.47559 * 150.00050 * 1 2 3 33 33 H 1.08003 * 126.38313 * 0.02562 * 3 2 1 34 34 H 0.96997 * 119.99692 * 0.02562 * 10 8 7 35 35 H 1.09002 * 113.61445 * 254.52836 * 13 11 10 36 36 H 1.09002 * 113.61408 * 25.34566 * 13 11 10 37 37 H 0.97001 * 120.00117 * 335.00621 * 16 14 13 38 38 H 1.09002 * 109.47174 * 300.00130 * 19 17 16 39 39 H 1.09002 * 109.47481 * 60.00351 * 19 17 16 40 40 H 0.96996 * 120.00220 * 179.97438 * 24 23 21 41 41 H 1.08997 * 113.61668 * 334.56642 * 29 11 10 42 42 H 1.08998 * 113.61674 * 105.39151 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0775 0.0000 4 7 3.5950 0.6152 -0.0006 5 1 4.3887 1.1730 -0.0004 6 7 3.5997 -0.6695 0.0049 7 6 2.3634 -1.1264 -0.0006 8 6 1.9505 -2.5446 -0.0008 9 8 0.7697 -2.8339 -0.0005 10 7 2.8828 -3.5179 -0.0014 11 6 2.4732 -4.9245 -0.0022 12 1 1.4722 -5.0748 -0.4065 13 6 3.5271 -5.8726 -0.5982 14 6 3.1654 -6.8582 0.5255 15 1 4.0281 -7.3704 0.9515 16 7 2.0748 -7.7718 0.1763 17 6 1.9736 -8.9666 0.7918 18 8 2.7850 -9.2852 1.6350 19 6 0.8520 -9.9068 0.4322 20 16 0.9878 -11.4150 1.4236 21 6 -0.4054 -12.3066 0.8165 22 1 -1.0343 -11.8718 0.0538 23 6 -0.6948 -13.5678 1.3186 24 7 0.0714 -14.0977 2.2487 25 14 -2.1722 -14.5129 0.6756 26 1 -2.8657 -13.7034 -0.3584 27 1 -1.7184 -15.7944 0.0781 28 1 -3.1068 -14.7923 1.7953 29 6 2.7079 -5.6351 1.3412 30 1 -0.3634 0.0000 1.0277 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3634 -0.8900 -0.5138 33 1 2.0219 2.1138 0.0004 34 1 3.8249 -3.2870 -0.0014 35 1 3.2746 -6.2350 -1.5948 36 1 4.5456 -5.4901 -0.5325 37 1 1.4256 -7.5170 -0.4979 38 1 -0.1047 -9.4249 0.6336 39 1 0.9155 -10.1603 -0.6260 40 1 -0.1310 -14.9789 2.5999 41 1 3.5027 -5.1884 1.9386 42 1 1.7944 -5.8045 1.9111 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001758665710.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:19 Heat of formation + Delta-G solvation = 18.962577 kcal Electronic energy + Delta-G solvation = -25211.366367 eV Core-core repulsion = 21319.917299 eV Total energy + Delta-G solvation = -3891.449068 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.12394 -40.49221 -39.19097 -37.80952 -34.29274 -33.44132 -32.62084 -32.39975 -31.43743 -29.01868 -27.53446 -25.95307 -25.63060 -25.36495 -23.37855 -21.11562 -20.99188 -20.35979 -19.59502 -18.64750 -17.83687 -17.35897 -16.87375 -16.28888 -16.05048 -15.89668 -14.98114 -14.86624 -14.77931 -14.60921 -14.23342 -13.95598 -13.66468 -13.50971 -13.23892 -13.12461 -12.88854 -12.73556 -12.65367 -12.49020 -12.17422 -11.86502 -11.29966 -11.05326 -11.01713 -10.99183 -10.75216 -10.72466 -10.26932 -9.90993 -9.77882 -9.40198 -9.34983 -9.22658 -9.05182 -8.85551 -8.20636 -6.47205 -6.19344 -3.89560 1.14974 1.64840 2.35633 2.90575 3.02740 3.05869 3.09408 3.23915 3.30212 3.34977 3.71209 4.00889 4.21084 4.22887 4.33950 4.38692 4.72445 4.74723 4.82333 4.88842 5.08826 5.14954 5.16033 5.39419 5.42366 5.47060 5.55708 5.58580 5.66769 5.70275 5.76209 5.89176 5.92485 5.97869 6.11349 6.17718 6.23395 6.46860 6.69580 7.13021 7.42230 7.62726 7.71543 7.93111 8.38189 8.62318 9.26277 10.88156 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.025904 B = 0.001733 C = 0.001653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.638316 B =16157.643130 C =16930.287190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.144 4.144 3 C -0.021 4.021 4 N -0.381 5.381 5 H 0.447 0.553 6 N -0.259 5.259 7 C -0.014 4.014 8 C 0.604 3.396 9 O -0.526 6.526 10 N -0.707 5.707 11 C 0.122 3.878 12 H 0.118 0.882 13 C -0.152 4.152 14 C 0.129 3.871 15 H 0.110 0.890 16 N -0.722 5.722 17 C 0.536 3.464 18 O -0.516 6.516 19 C -0.154 4.154 20 S -0.060 6.060 21 C -0.535 4.535 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.868 5.868 25 Si 0.919 3.081 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.280 1.280 29 C -0.164 4.164 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.185 0.815 34 H 0.406 0.594 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.399 0.601 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.268 0.732 41 H 0.092 0.908 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.657 33.556 -7.724 35.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.154 4.154 3 C -0.165 4.165 4 N -0.095 5.095 5 H 0.292 0.708 6 N -0.096 5.096 7 C -0.175 4.175 8 C 0.388 3.612 9 O -0.400 6.400 10 N -0.357 5.357 11 C 0.017 3.983 12 H 0.136 0.864 13 C -0.191 4.191 14 C 0.022 3.978 15 H 0.128 0.872 16 N -0.376 5.376 17 C 0.322 3.678 18 O -0.389 6.389 19 C -0.305 4.305 20 S 0.166 5.834 21 C -0.683 4.683 22 H 0.092 0.908 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 C -0.204 4.204 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.202 0.798 34 H 0.242 0.758 35 H 0.101 0.899 36 H 0.117 0.883 37 H 0.234 0.766 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.077 0.923 41 H 0.111 0.889 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.251 32.250 -6.196 34.118 hybrid contribution -1.992 0.796 -1.656 2.710 sum 7.259 33.047 -7.851 34.734 Atomic orbital electron populations 1.20211 0.87875 1.03237 1.02637 1.20446 0.97763 0.90393 1.06802 1.22738 0.84085 1.00690 1.08994 1.43214 1.08688 1.04372 1.53211 0.70821 1.73498 1.23128 0.93991 1.18948 1.21913 0.89539 0.95211 1.10874 1.16916 0.85571 0.82625 0.76062 1.90799 1.16810 1.82605 1.49784 1.45840 1.09812 1.05675 1.74399 1.22714 0.99851 0.78266 0.97472 0.86436 1.23747 0.99869 0.95921 0.99605 1.21563 0.91581 0.89149 0.95525 0.87237 1.45724 1.30550 1.17558 1.43735 1.20330 0.85968 0.80911 0.80575 1.90698 1.41993 1.74826 1.31413 1.23541 0.98973 1.02085 1.05869 1.85388 1.38952 1.08238 1.50798 1.22918 1.13820 1.04599 1.26947 0.90836 1.24995 0.97311 0.96538 0.94769 1.70029 1.37326 1.16692 1.26275 0.86115 0.81268 0.79385 0.78716 1.19600 1.20592 1.20575 1.23994 1.03106 0.96223 0.97123 0.91252 0.91875 0.89773 0.79793 0.75832 0.89917 0.88331 0.76632 0.89082 0.89121 0.92258 0.88947 0.90198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 9.93 36.00 0.36 -0.26 16 2 C -0.14 -1.19 6.25 -104.41 -0.65 -1.84 16 3 C -0.02 -0.10 11.97 -17.17 -0.21 -0.31 16 4 N -0.38 -1.80 6.83 30.47 0.21 -1.59 16 5 H 0.45 0.36 8.96 -190.44 -1.71 -1.35 16 6 N -0.26 -2.06 11.92 33.42 0.40 -1.66 16 7 C -0.01 -0.14 7.13 -82.76 -0.59 -0.73 16 8 C 0.60 6.81 7.83 -12.39 -0.10 6.71 16 9 O -0.53 -7.40 14.72 5.30 0.08 -7.33 16 10 N -0.71 -6.35 5.35 -54.00 -0.29 -6.64 16 11 C 0.12 1.13 4.12 -67.12 -0.28 0.85 16 12 H 0.12 1.23 7.47 -51.93 -0.39 0.85 16 13 C -0.15 -1.21 7.57 -25.92 -0.20 -1.41 16 14 C 0.13 1.46 4.33 -67.02 -0.29 1.17 16 15 H 0.11 1.41 7.47 -51.93 -0.39 1.03 16 16 N -0.72 -9.56 5.27 -52.92 -0.28 -9.84 16 17 C 0.54 9.97 7.85 -10.98 -0.09 9.88 16 18 O -0.52 -11.65 15.46 5.56 0.09 -11.57 16 19 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 20 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 21 C -0.53 -15.36 9.50 30.94 0.29 -15.07 16 22 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 24 N -0.87 -26.35 13.22 55.49 0.73 -25.62 16 25 Si 0.92 21.61 29.55 -169.99 -5.02 16.59 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 29 C -0.16 -1.73 7.68 -25.82 -0.20 -1.93 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.81 6.72 -51.93 -0.35 0.46 16 33 H 0.18 0.21 8.06 -52.48 -0.42 -0.22 16 34 H 0.41 2.92 8.45 -40.82 -0.35 2.58 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.10 0.62 8.12 -51.93 -0.42 0.19 16 37 H 0.40 4.23 8.70 -40.82 -0.36 3.88 16 38 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 39 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 40 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 377.08 15.07 5.68 5.68 Total: -1.00 -38.31 377.08 -9.31 -47.62 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -6.88 Total: 2.04 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -1.82 Total: -3.84 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 0.77 Total: -45.35 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: 0.16 Total: -18.89 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -38.31 -9.31 -47.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758665710.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.585 kcal (2) G-P(sol) polarization free energy of solvation -38.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds