Wall clock time and date at job start Tue Mar 31 2020 20:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35364 * 127.24802 * 2 1 4 4 N 1.35035 * 107.22677 * 180.02562 * 3 2 1 5 5 H 0.97003 * 124.88031 * 180.02562 * 4 3 2 6 6 N 1.28470 * 110.23101 * 359.72190 * 4 3 2 7 7 C 1.31811 * 110.07174 * 0.46268 * 6 4 3 8 8 C 1.47710 * 126.51577 * 179.81970 * 7 6 4 9 9 O 1.21573 * 119.99890 * 179.68618 * 8 7 6 10 10 N 1.34783 * 119.99884 * 359.68005 * 8 7 6 11 11 C 1.46499 * 119.99531 * 180.02562 * 10 8 7 12 12 H 1.08997 * 112.91343 * 23.75029 * 11 10 8 13 13 C 1.53781 * 113.61225 * 155.00207 * 11 10 8 14 14 C 1.53786 * 87.17350 * 139.93836 * 13 11 10 15 15 H 1.09000 * 113.61138 * 220.06261 * 14 13 11 16 16 N 1.46496 * 113.61518 * 89.15486 * 14 13 11 17 17 C 1.34779 * 119.99390 * 154.99856 * 16 14 13 18 18 O 1.21277 * 120.00682 * 0.02562 * 17 16 14 19 19 C 1.50703 * 119.99369 * 180.02562 * 17 16 14 20 20 S 1.81000 * 109.46911 * 180.02562 * 19 17 16 21 21 C 1.76196 * 99.99957 * 179.97438 * 20 19 17 22 22 H 1.07999 * 120.00635 * 359.97438 * 21 20 19 23 23 C 1.38800 * 120.00163 * 179.97438 * 21 20 19 24 24 N 1.31633 * 120.00015 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00547 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46626 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.47188 * 119.99849 * 25 23 21 28 28 H 1.48502 * 109.47336 * 240.00399 * 25 23 21 29 29 C 1.53782 * 113.61191 * 252.49880 * 11 10 8 30 30 H 1.09006 * 109.47516 * 270.00148 * 1 2 3 31 31 H 1.09005 * 109.47568 * 29.99891 * 1 2 3 32 32 H 1.09005 * 109.47559 * 150.00050 * 1 2 3 33 33 H 1.08003 * 126.38313 * 0.02562 * 3 2 1 34 34 H 0.96997 * 119.99692 * 0.02562 * 10 8 7 35 35 H 1.09002 * 113.61445 * 254.52836 * 13 11 10 36 36 H 1.09002 * 113.61408 * 25.34566 * 13 11 10 37 37 H 0.97001 * 120.00117 * 335.00621 * 16 14 13 38 38 H 1.09002 * 109.47174 * 300.00130 * 19 17 16 39 39 H 1.09002 * 109.47481 * 60.00351 * 19 17 16 40 40 H 0.96996 * 120.00220 * 179.97438 * 24 23 21 41 41 H 1.08997 * 113.61668 * 334.56642 * 29 11 10 42 42 H 1.08998 * 113.61674 * 105.39151 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0775 0.0000 4 7 3.5950 0.6152 -0.0006 5 1 4.3887 1.1730 -0.0004 6 7 3.5997 -0.6695 0.0049 7 6 2.3634 -1.1264 -0.0006 8 6 1.9505 -2.5446 -0.0008 9 8 0.7697 -2.8339 -0.0005 10 7 2.8828 -3.5179 -0.0014 11 6 2.4732 -4.9245 -0.0022 12 1 1.4722 -5.0748 -0.4065 13 6 3.5271 -5.8726 -0.5982 14 6 3.1654 -6.8582 0.5255 15 1 4.0281 -7.3704 0.9515 16 7 2.0748 -7.7718 0.1763 17 6 1.9736 -8.9666 0.7918 18 8 2.7850 -9.2852 1.6350 19 6 0.8520 -9.9068 0.4322 20 16 0.9878 -11.4150 1.4236 21 6 -0.4054 -12.3066 0.8165 22 1 -1.0343 -11.8718 0.0538 23 6 -0.6948 -13.5678 1.3186 24 7 0.0714 -14.0977 2.2487 25 14 -2.1722 -14.5129 0.6756 26 1 -2.8657 -13.7034 -0.3584 27 1 -1.7184 -15.7944 0.0781 28 1 -3.1068 -14.7923 1.7953 29 6 2.7079 -5.6351 1.3412 30 1 -0.3634 0.0000 1.0277 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3634 -0.8900 -0.5138 33 1 2.0219 2.1138 0.0004 34 1 3.8249 -3.2870 -0.0014 35 1 3.2746 -6.2350 -1.5948 36 1 4.5456 -5.4901 -0.5325 37 1 1.4256 -7.5170 -0.4979 38 1 -0.1047 -9.4249 0.6336 39 1 0.9155 -10.1603 -0.6260 40 1 -0.1310 -14.9789 2.5999 41 1 3.5027 -5.1884 1.9386 42 1 1.7944 -5.8045 1.9111 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001758665710.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:18 Heat of formation + Delta-G solvation = -11.420750 kcal Electronic energy + Delta-G solvation = -25212.683887 eV Core-core repulsion = 21319.917299 eV Total energy + Delta-G solvation = -3892.766588 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.62658 -41.47179 -40.31944 -38.94442 -35.29547 -34.58213 -33.98326 -33.72184 -32.06918 -30.54334 -28.07042 -27.68013 -26.75138 -26.31600 -24.17078 -22.23605 -21.64848 -21.20257 -20.54559 -19.82311 -19.09733 -18.10447 -18.04487 -17.27874 -17.02447 -16.87756 -16.84730 -16.39483 -15.98531 -15.61779 -15.45712 -14.93760 -14.64221 -14.49184 -14.32698 -14.02601 -13.99741 -13.79634 -13.49124 -13.35195 -13.16355 -13.14594 -13.01177 -12.90909 -12.57138 -11.92954 -11.86760 -11.71649 -11.62161 -11.15508 -11.11693 -10.95737 -10.47969 -10.27328 -10.16506 -9.97835 -9.77909 -8.66086 -8.34599 -6.12375 0.50096 1.17357 1.27008 1.41617 1.46929 1.58387 1.58943 1.91464 2.23638 2.28411 2.30218 2.31553 2.99582 3.31871 3.36811 3.43323 3.55902 3.86588 3.94475 3.95721 4.03092 4.17889 4.31301 4.49777 4.51647 4.56819 4.59761 4.71054 4.79407 4.88063 4.90305 4.99797 5.00976 5.04185 5.20545 5.39582 5.42733 5.54087 5.61849 6.14296 6.20497 6.45589 6.49514 6.88062 7.06928 7.16483 7.23556 8.74907 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.025904 B = 0.001733 C = 0.001653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.638316 B =16157.643130 C =16930.287190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.179 4.179 3 C 0.006 3.994 4 N -0.363 5.363 5 H 0.465 0.535 6 N -0.268 5.268 7 C -0.046 4.046 8 C 0.598 3.402 9 O -0.565 6.565 10 N -0.695 5.695 11 C 0.125 3.875 12 H 0.106 0.894 13 C -0.126 4.126 14 C 0.116 3.884 15 H 0.095 0.905 16 N -0.698 5.698 17 C 0.538 3.462 18 O -0.562 6.562 19 C -0.131 4.131 20 S -0.149 6.149 21 C -0.547 4.547 22 H 0.082 0.918 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 0.999 3.001 26 H -0.257 1.257 27 H -0.273 1.273 28 H -0.274 1.274 29 C -0.162 4.162 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.055 0.945 33 H 0.228 0.772 34 H 0.417 0.583 35 H 0.096 0.904 36 H 0.125 0.875 37 H 0.415 0.585 38 H 0.107 0.893 39 H 0.112 0.888 40 H 0.271 0.729 41 H 0.105 0.895 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.742 36.303 -9.657 38.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.189 4.189 3 C -0.139 4.139 4 N -0.080 5.080 5 H 0.314 0.686 6 N -0.106 5.106 7 C -0.205 4.205 8 C 0.383 3.617 9 O -0.442 6.442 10 N -0.345 5.345 11 C 0.020 3.980 12 H 0.124 0.876 13 C -0.165 4.165 14 C 0.010 3.990 15 H 0.113 0.887 16 N -0.351 5.351 17 C 0.325 3.675 18 O -0.440 6.440 19 C -0.283 4.283 20 S 0.078 5.922 21 C -0.694 4.694 22 H 0.100 0.900 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.821 3.179 26 H -0.181 1.181 27 H -0.198 1.198 28 H -0.200 1.200 29 C -0.202 4.202 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.074 0.926 33 H 0.245 0.755 34 H 0.254 0.746 35 H 0.115 0.885 36 H 0.143 0.857 37 H 0.253 0.747 38 H 0.126 0.874 39 H 0.130 0.870 40 H 0.080 0.920 41 H 0.123 0.877 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.381 35.057 -8.167 37.198 hybrid contribution -1.930 0.156 -1.057 2.206 sum 7.451 35.213 -9.224 37.156 Atomic orbital electron populations 1.20131 0.88082 1.03043 1.02243 1.20717 0.98224 0.91157 1.08799 1.23285 0.83186 1.01691 1.05751 1.43368 1.09749 1.03661 1.51191 0.68586 1.73426 1.22273 0.95512 1.19350 1.21824 0.90732 0.94788 1.13141 1.17256 0.85275 0.83718 0.75412 1.90771 1.18345 1.83356 1.51723 1.45733 1.10111 1.05160 1.73545 1.22593 0.99995 0.78758 0.96655 0.87591 1.23659 1.00739 0.93290 0.98784 1.21750 0.90400 0.89024 0.97852 0.88676 1.45468 1.31079 1.15904 1.42663 1.20037 0.85006 0.82066 0.80433 1.90685 1.43536 1.76101 1.33699 1.23390 1.00623 0.98879 1.05376 1.85543 1.39847 1.13016 1.53815 1.23248 1.13888 1.05148 1.27157 0.89950 1.26128 1.00630 0.97597 0.94798 1.70187 1.39498 1.17286 1.27786 0.84902 0.76910 0.77761 0.78343 1.18107 1.19819 1.19957 1.23990 1.02450 0.96127 0.97649 0.91786 0.89354 0.92616 0.75530 0.74592 0.88538 0.85703 0.74748 0.87434 0.86977 0.91983 0.87667 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.15 9.93 71.24 0.71 -0.45 16 2 C -0.18 -2.73 6.25 -19.73 -0.12 -2.86 16 3 C 0.01 0.04 11.97 83.54 1.00 1.04 16 4 N -0.36 -2.35 6.83 -57.51 -0.39 -2.74 16 5 H 0.47 -0.88 8.96 -219.99 -1.97 -2.85 16 6 N -0.27 -3.77 11.92 -48.18 -0.57 -4.35 16 7 C -0.05 -0.86 7.13 42.46 0.30 -0.56 16 8 C 0.60 13.56 7.83 86.75 0.68 14.24 16 9 O -0.56 -16.57 14.72 -3.95 -0.06 -16.63 16 10 N -0.69 -11.88 5.35 -443.02 -2.37 -14.25 16 11 C 0.12 2.20 4.12 45.52 0.19 2.38 16 12 H 0.11 2.18 7.47 -2.39 -0.02 2.16 16 13 C -0.13 -1.71 7.57 31.12 0.24 -1.47 16 14 C 0.12 2.52 4.33 45.58 0.20 2.72 16 15 H 0.10 2.43 7.47 -2.39 -0.02 2.41 16 16 N -0.70 -17.90 5.27 -439.74 -2.32 -20.21 16 17 C 0.54 20.12 7.85 87.66 0.69 20.81 16 18 O -0.56 -26.21 15.46 -3.02 -0.05 -26.25 16 19 C -0.13 -5.31 6.16 71.24 0.44 -4.87 16 20 S -0.15 -8.41 20.57 -56.49 -1.16 -9.58 16 21 C -0.55 -31.69 9.50 67.95 0.65 -31.05 16 22 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 23 C 0.01 0.76 5.49 84.86 0.47 1.23 16 24 N -0.91 -56.56 13.22 21.65 0.29 -56.27 16 25 Si 1.00 44.27 29.55 68.60 2.03 46.30 16 26 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 27 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 28 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 29 C -0.16 -3.35 7.68 31.18 0.24 -3.12 16 30 H 0.06 0.96 8.14 -2.38 -0.02 0.95 16 31 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.05 1.14 6.72 -2.38 -0.02 1.13 16 33 H 0.23 -0.62 8.06 -2.91 -0.02 -0.64 16 34 H 0.42 5.31 8.45 -92.71 -0.78 4.53 16 35 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.12 1.12 8.12 -2.39 -0.02 1.11 16 37 H 0.42 8.12 8.70 -92.71 -0.81 7.31 16 38 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 39 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 40 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 41 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -88.09 377.08 -1.41 -89.50 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -2.47 Total: 16.44 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: 5.66 Total: -1.96 kcal Atomic # 7 Polarization: -92.45 SS G_CDS: -5.37 Total: -97.82 kcal Atomic # 8 Polarization: -42.78 SS G_CDS: -0.10 Total: -42.89 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -1.16 Total: -9.58 kcal Total: -88.09 -1.41 -89.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758665710.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.077 kcal (2) G-P(sol) polarization free energy of solvation -88.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds