Wall clock time and date at job start Tue Mar 31 2020 20:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35373 * 126.38341 * 2 1 4 4 C 1.41499 * 105.50006 * 180.02562 * 3 2 1 5 5 C 1.47715 * 126.51677 * 180.02562 * 4 3 2 6 6 O 1.21579 * 119.99792 * 359.97438 * 5 4 3 7 7 N 1.34774 * 120.00125 * 179.97438 * 5 4 3 8 8 C 1.46498 * 119.99740 * 174.99737 * 7 5 4 9 9 C 1.53001 * 115.54986 * 279.61153 * 8 7 5 10 10 N 1.46500 * 109.47300 * 324.96844 * 9 8 7 11 11 C 1.34776 * 120.00195 * 174.90457 * 10 9 8 12 12 O 1.21280 * 119.99670 * 0.02562 * 11 10 9 13 13 C 1.50691 * 120.00030 * 179.97438 * 11 10 9 14 14 S 1.81003 * 109.47354 * 180.02562 * 13 11 10 15 15 C 1.76193 * 100.00307 * 180.02562 * 14 13 11 16 16 H 1.08000 * 120.00197 * 359.97438 * 15 14 13 17 17 C 1.38799 * 120.00210 * 180.02562 * 15 14 13 18 18 N 1.31626 * 119.99990 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00142 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47245 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47154 * 119.99994 * 19 17 15 22 22 H 1.48492 * 109.47263 * 239.99904 * 19 17 15 23 23 C 1.53002 * 117.49863 * 133.91013 * 8 7 5 24 24 C 1.52996 * 60.00065 * 252.50690 * 23 8 7 25 25 N 1.31806 * 106.96956 * 359.97438 * 4 3 2 26 26 N 1.28468 * 110.06798 * 359.72456 * 25 4 3 27 27 H 0.97003 * 124.88565 * 180.30629 * 26 25 4 28 28 H 1.08992 * 109.47421 * 89.99757 * 1 2 3 29 29 H 1.09006 * 109.47219 * 329.99741 * 1 2 3 30 30 H 1.09002 * 109.46470 * 209.99966 * 1 2 3 31 31 H 1.08005 * 127.24778 * 0.02562 * 3 2 1 32 32 H 0.96996 * 119.99887 * 354.99284 * 7 5 4 33 33 H 1.08998 * 109.46819 * 84.96770 * 9 8 7 34 34 H 1.08993 * 109.47090 * 204.96391 * 9 8 7 35 35 H 0.96999 * 119.99741 * 354.90075 * 10 9 8 36 36 H 1.09004 * 109.47435 * 300.00232 * 13 11 10 37 37 H 1.09001 * 109.47692 * 59.99809 * 13 11 10 38 38 H 0.97001 * 120.00386 * 180.02562 * 18 17 15 39 39 H 1.09000 * 117.49644 * 359.97438 * 23 8 7 40 40 H 1.09000 * 117.49943 * 145.01771 * 23 8 7 41 41 H 1.09006 * 117.50112 * 252.51056 * 24 23 8 42 42 H 1.09003 * 117.52253 * 107.47726 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0898 0.0000 4 6 3.6320 0.5854 -0.0006 5 6 4.8765 1.3813 -0.0003 6 8 4.8213 2.5958 0.0001 7 7 6.0730 0.7611 -0.0005 8 6 7.3049 1.5462 -0.1108 9 6 7.6809 1.9887 -1.5264 10 7 7.2962 0.9470 -2.4820 11 6 7.4371 1.1611 -3.8052 12 8 7.8828 2.2159 -4.2047 13 6 7.0419 0.0894 -4.7881 14 16 7.3488 0.6736 -6.4735 15 6 6.8133 -0.7343 -7.3877 16 1 6.4385 -1.6043 -6.8691 17 6 6.8742 -0.7257 -8.7743 18 7 7.3316 0.3344 -9.4064 19 14 6.3072 -2.2185 -9.7434 20 1 5.8400 -3.2700 -8.8045 21 1 5.1928 -1.8297 -10.6446 22 1 7.4374 -2.7426 -10.5516 23 6 8.4462 1.2089 0.8508 24 6 7.6423 2.4969 1.0395 25 7 3.5421 -0.7295 -0.0004 26 7 2.3081 -1.0870 0.0061 27 1 1.9967 -2.0056 0.0119 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 0.8900 0.5139 30 1 -0.3632 -0.8900 0.5139 31 1 2.0056 2.1261 0.0004 32 1 6.1185 -0.2051 0.0726 33 1 7.1588 2.9144 -1.7683 34 1 8.7569 2.1532 -1.5818 35 1 6.9401 0.1032 -2.1624 36 1 7.6308 -0.8090 -4.6025 37 1 5.9829 -0.1397 -4.6697 38 1 7.3738 0.3406 -10.3755 39 1 8.2802 0.4031 1.5658 40 1 9.4651 1.3020 0.4751 41 1 8.1323 3.4375 0.7879 42 1 6.9473 2.5386 1.8783 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759876779.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:54 Heat of formation + Delta-G solvation = 27.478441 kcal Electronic energy + Delta-G solvation = -26017.683023 eV Core-core repulsion = 22126.603230 eV Total energy + Delta-G solvation = -3891.079792 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.00707 -40.22034 -38.86357 -37.44653 -33.87406 -33.59563 -32.77311 -32.40667 -31.94353 -29.69898 -27.45621 -26.38865 -25.40105 -24.76479 -22.86398 -21.60654 -20.96440 -20.23816 -19.73156 -18.05229 -17.87045 -17.27010 -16.76195 -16.31067 -16.15354 -15.45259 -15.09798 -14.84624 -14.78430 -14.56437 -14.19036 -14.10700 -13.83663 -13.57376 -13.37592 -13.27602 -13.10622 -12.77190 -12.56577 -12.48214 -11.85509 -11.70896 -11.23744 -11.21240 -11.06008 -10.99532 -10.74482 -10.54581 -10.15816 -9.79053 -9.74239 -9.42032 -9.29439 -9.28358 -9.05616 -8.77869 -8.19258 -6.46408 -6.19424 -3.89313 1.27077 1.76965 2.41629 2.75854 3.08029 3.17073 3.20919 3.22400 3.28638 3.32586 3.42506 3.78854 4.06960 4.22343 4.28493 4.39245 4.52863 4.58559 4.70100 5.02941 5.05152 5.15563 5.20287 5.25728 5.34306 5.34876 5.38685 5.55418 5.56978 5.64955 5.70212 5.82527 5.89154 5.94811 6.03795 6.17833 6.25277 6.59183 6.69312 7.17381 7.53164 7.61865 7.77957 8.00691 8.37615 8.68615 9.25776 10.88094 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009274 B = 0.002991 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3018.430186 B = 9359.532002 C =11667.122292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.014 3.986 3 C -0.176 4.176 4 C -0.010 4.010 5 C 0.610 3.390 6 O -0.515 6.515 7 N -0.690 5.690 8 C 0.083 3.917 9 C 0.154 3.846 10 N -0.732 5.732 11 C 0.532 3.468 12 O -0.517 6.517 13 C -0.152 4.152 14 S -0.059 6.059 15 C -0.535 4.535 16 H 0.072 0.928 17 C 0.073 3.927 18 N -0.867 5.867 19 Si 0.918 3.082 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.168 4.168 24 C -0.150 4.150 25 N -0.258 5.258 26 N -0.379 5.379 27 H 0.445 0.555 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.163 0.837 32 H 0.408 0.592 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.396 0.604 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.268 0.732 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.107 0.893 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.608 -4.082 26.590 28.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C -0.204 4.204 4 C -0.171 4.171 5 C 0.395 3.605 6 O -0.387 6.387 7 N -0.343 5.343 8 C -0.004 4.004 9 C 0.028 3.972 10 N -0.387 5.387 11 C 0.318 3.682 12 O -0.391 6.391 13 C -0.302 4.302 14 S 0.168 5.832 15 C -0.683 4.683 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.197 1.197 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.205 4.205 24 C -0.188 4.188 25 N -0.095 5.095 26 N -0.094 5.094 27 H 0.290 0.710 28 H 0.100 0.900 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.181 0.819 32 H 0.245 0.755 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.230 0.770 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.077 0.923 39 H 0.119 0.881 40 H 0.128 0.872 41 H 0.126 0.874 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.188 -2.235 25.729 27.093 hybrid contribution -1.769 -2.973 -0.011 3.459 sum -9.957 -5.207 25.719 28.066 Atomic orbital electron populations 1.20379 0.86360 1.03990 1.03724 1.21489 0.95546 0.87057 1.07025 1.21545 0.90368 0.99911 1.08599 1.21864 0.95117 0.89781 1.10380 1.16872 0.81354 0.86489 0.75808 1.90825 1.86522 1.12769 1.48618 1.45081 1.03751 1.10370 1.75094 1.20838 0.86272 1.01156 0.92164 1.21008 1.00241 0.91913 0.84009 1.45834 1.68136 1.18983 1.05750 1.20274 0.77369 0.88566 0.82013 1.90702 1.43463 1.26671 1.78295 1.23513 1.04235 1.00288 1.02211 1.85401 1.84308 1.23577 0.89934 1.22910 1.49405 1.02194 0.93783 0.90960 1.24990 0.94924 0.97005 0.96694 1.70029 1.43262 1.28044 1.08917 0.86122 0.78419 0.81449 0.79520 1.19679 1.20581 1.20552 1.23492 0.96096 0.99887 1.01069 1.23229 1.02062 0.94785 0.98736 1.73501 1.01829 1.14906 1.19231 1.43292 1.02903 1.09665 1.53498 0.71034 0.89965 0.89390 0.91056 0.81910 0.75550 0.90285 0.90503 0.77042 0.89292 0.89466 0.92254 0.88100 0.87206 0.87448 0.88069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.34 10.44 36.01 0.38 0.04 16 2 C 0.01 0.11 7.23 -82.21 -0.59 -0.49 16 3 C -0.18 -1.83 10.73 -39.36 -0.42 -2.25 16 4 C -0.01 -0.12 7.13 -82.77 -0.59 -0.71 16 5 C 0.61 7.87 7.75 -12.39 -0.10 7.77 16 6 O -0.52 -8.22 16.49 5.30 0.09 -8.13 16 7 N -0.69 -7.09 4.39 -48.58 -0.21 -7.30 16 8 C 0.08 0.86 2.02 -131.82 -0.27 0.59 16 9 C 0.15 2.06 5.90 -4.04 -0.02 2.03 16 10 N -0.73 -10.91 5.40 -60.30 -0.33 -11.24 16 11 C 0.53 10.63 7.85 -10.99 -0.09 10.54 16 12 O -0.52 -12.39 15.86 5.56 0.09 -12.30 16 13 C -0.15 -3.23 6.16 36.00 0.22 -3.00 16 14 S -0.06 -1.64 20.57 -107.50 -2.21 -3.86 16 15 C -0.53 -15.53 9.50 30.94 0.29 -15.24 16 16 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 17 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 18 N -0.87 -26.51 13.22 55.49 0.73 -25.78 16 19 Si 0.92 21.64 29.55 -169.99 -5.02 16.62 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 C -0.17 -1.25 10.10 -26.73 -0.27 -1.52 16 24 C -0.15 -1.35 9.56 -26.73 -0.26 -1.61 16 25 N -0.26 -2.57 11.93 33.42 0.40 -2.17 16 26 N -0.38 -2.74 6.83 33.50 0.23 -2.51 16 27 H 0.45 1.61 8.96 -190.44 -1.71 -0.10 16 28 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.15 8.14 -51.93 -0.42 -0.28 16 31 H 0.16 1.59 8.06 -52.48 -0.42 1.16 16 32 H 0.41 3.42 8.56 -40.82 -0.35 3.07 16 33 H 0.08 1.26 8.13 -51.93 -0.42 0.84 16 34 H 0.08 0.97 7.90 -51.93 -0.41 0.56 16 35 H 0.40 4.92 7.76 -40.82 -0.32 4.61 16 36 H 0.09 1.73 8.14 -51.91 -0.42 1.30 16 37 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 38 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 39 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.11 0.74 8.05 -51.93 -0.42 0.32 16 41 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 384.10 15.07 5.79 5.79 Total: -1.00 -38.80 384.10 -9.23 -48.04 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -6.97 Total: 4.65 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -1.81 Total: -1.82 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: 0.82 Total: -48.99 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: 0.18 Total: -20.43 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -38.80 -9.23 -48.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759876779.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.515 kcal (2) G-P(sol) polarization free energy of solvation -38.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds