Wall clock time and date at job start Tue Mar 31 2020 20:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47085 * 2 1 4 4 N 1.46502 * 109.46840 * 179.97438 * 3 2 1 5 5 C 1.37101 * 120.00129 * 90.39181 * 4 3 2 6 6 H 1.08003 * 120.00304 * 210.33382 * 5 4 3 7 7 C 1.38944 * 119.99749 * 30.33372 * 5 4 3 8 8 N 1.31409 * 120.00359 * 41.50166 * 7 5 4 9 9 Si 1.86804 * 119.99832 * 221.50032 * 7 5 4 10 10 H 1.48505 * 109.46985 * 265.02352 * 9 7 5 11 11 H 1.48500 * 109.47219 * 145.02674 * 9 7 5 12 12 H 1.48502 * 109.47065 * 25.02382 * 9 7 5 13 13 C 1.34780 * 119.99950 * 270.38527 * 4 3 2 14 14 O 1.21292 * 120.00089 * 0.02562 * 13 4 3 15 15 C 1.50708 * 119.99949 * 180.02562 * 13 4 3 16 16 H 1.08993 * 110.85517 * 55.70394 * 15 13 4 17 17 C 1.54735 * 110.97106 * 291.91083 * 15 13 4 18 18 C 1.51689 * 102.55023 * 266.11255 * 17 15 13 19 19 C 1.47573 * 125.87151 * 164.58540 * 18 17 15 20 20 C 1.39642 * 120.14827 * 0.02562 * 19 18 17 21 21 C 1.38111 * 119.84541 * 180.02562 * 20 19 18 22 22 F 1.35100 * 119.92026 * 180.02562 * 21 20 19 23 23 C 1.38618 * 120.15972 * 0.02562 * 21 20 19 24 24 C 1.38237 * 120.30936 * 359.97438 * 23 21 20 25 25 C 1.38249 * 120.15285 * 359.72187 * 24 23 21 26 26 F 1.35100 * 120.08493 * 180.27582 * 25 24 23 27 27 N 1.29118 * 108.26592 * 344.60834 * 18 17 15 28 28 O 1.41484 * 112.87554 * 359.67530 * 27 18 17 29 29 H 1.09001 * 109.47150 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47214 * 300.00148 * 1 2 3 31 31 H 1.09004 * 109.46795 * 60.00085 * 1 2 3 32 32 H 1.09002 * 109.47214 * 239.99852 * 2 1 3 33 33 H 1.09004 * 109.47211 * 120.00255 * 2 1 3 34 34 H 1.08998 * 109.47246 * 60.00610 * 3 2 1 35 35 H 1.08991 * 109.46959 * 299.99705 * 3 2 1 36 36 H 0.96999 * 120.00125 * 0.02562 * 8 7 5 37 37 H 1.09003 * 110.79747 * 24.37716 * 17 15 13 38 38 H 1.08997 * 110.79137 * 147.84857 * 17 15 13 39 39 H 1.07994 * 120.07314 * 0.02572 * 20 19 18 40 40 H 1.07998 * 119.84713 * 180.02562 * 23 21 20 41 41 H 1.07999 * 119.92313 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1910 1.4504 -1.1864 6 1 5.1602 0.9784 -1.2532 7 6 3.6394 2.0656 -2.3034 8 7 3.0206 3.2183 -2.1803 9 14 3.7776 1.2541 -3.9803 10 1 4.9561 1.8014 -4.6994 11 1 2.5474 1.5280 -4.7657 12 1 3.9394 -0.2121 -3.8089 13 6 4.1784 1.4347 1.1681 14 8 3.5715 1.4274 2.2183 15 6 5.6855 1.4353 1.1688 16 1 6.0734 2.2807 0.6007 17 6 6.2400 0.0987 0.6207 18 6 6.4514 -0.7133 1.8844 19 6 6.6633 -2.1723 1.9494 20 6 6.6822 -2.9312 0.7774 21 6 6.8805 -4.2963 0.8456 22 9 6.8996 -5.0319 -0.2874 23 6 7.0600 -4.9135 2.0737 24 6 7.0425 -4.1685 3.2381 25 6 6.8512 -2.8004 3.1843 26 9 6.8399 -2.0729 4.3226 27 7 6.4136 0.0913 2.8935 28 8 6.2009 1.4380 2.5155 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 2.9491 3.6399 -1.3097 37 1 5.5122 -0.3837 -0.0319 38 1 7.1842 0.2562 0.0995 39 1 6.5421 -2.4517 -0.1801 40 1 7.2151 -5.9812 2.1211 41 1 7.1834 -4.6558 4.1916 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069695949.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:21 Heat of formation + Delta-G solvation = -73.533877 kcal Electronic energy + Delta-G solvation = -29804.569284 eV Core-core repulsion = 25322.976131 eV Total energy + Delta-G solvation = -4481.593153 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.16104 -48.97920 -40.32923 -38.96506 -38.03178 -35.34477 -33.60624 -33.11894 -31.63670 -31.01831 -30.23674 -29.81384 -26.12614 -24.89329 -24.26528 -23.55909 -22.51747 -21.06387 -20.24445 -19.49070 -18.21150 -17.67639 -17.40416 -17.07171 -16.58140 -16.07287 -15.62481 -15.48875 -15.23743 -14.97248 -14.71009 -14.51606 -14.25843 -14.07007 -13.86257 -13.78930 -13.43398 -13.03316 -12.85447 -12.71650 -12.66318 -12.38597 -12.15600 -11.83686 -11.53430 -11.49902 -11.24968 -11.21049 -11.03557 -10.69647 -10.51418 -10.42777 -10.39396 -10.15268 -9.89163 -9.27024 -8.99792 -8.71718 -8.29142 -7.94752 -7.01215 -4.13853 0.29199 0.68865 2.12177 3.05415 3.14751 3.20991 3.23890 3.36517 3.62566 3.79657 3.89229 3.98892 4.10465 4.22634 4.37765 4.54930 4.71073 4.76492 4.85145 4.99578 5.20365 5.37805 5.49249 5.59251 5.62630 5.64557 5.67492 5.73786 5.81617 5.86689 5.96986 6.03910 6.12493 6.22310 6.37304 6.41184 6.43493 6.51934 6.79538 6.93538 7.41663 7.53495 7.79839 8.17137 8.79727 9.28891 9.67129 10.25656 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010827 B = 0.004185 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.493891 B = 6688.238803 C = 7491.557775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.130 4.130 3 C 0.109 3.891 4 N -0.432 5.432 5 C -0.471 4.471 6 H 0.090 0.910 7 C 0.033 3.967 8 N -0.831 5.831 9 Si 1.056 2.944 10 H -0.283 1.283 11 H -0.278 1.278 12 H -0.279 1.279 13 C 0.441 3.559 14 O -0.588 6.588 15 C 0.051 3.949 16 H 0.136 0.864 17 C -0.131 4.131 18 C 0.094 3.906 19 C -0.030 4.030 20 C -0.096 4.096 21 C 0.089 3.911 22 F -0.131 7.131 23 C -0.112 4.112 24 C -0.129 4.129 25 C 0.124 3.876 26 F -0.113 7.113 27 N -0.252 5.252 28 O -0.167 6.167 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.083 0.917 36 H 0.283 0.717 37 H 0.118 0.882 38 H 0.106 0.894 39 H 0.155 0.845 40 H 0.149 0.851 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.729 -14.340 1.706 15.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.168 4.168 3 C -0.014 4.014 4 N -0.152 5.152 5 C -0.596 4.596 6 H 0.108 0.892 7 C -0.181 4.181 8 N -0.460 5.460 9 Si 0.882 3.118 10 H -0.209 1.209 11 H -0.204 1.204 12 H -0.205 1.205 13 C 0.230 3.770 14 O -0.473 6.473 15 C -0.010 4.010 16 H 0.153 0.847 17 C -0.170 4.170 18 C -0.096 4.096 19 C -0.032 4.032 20 C -0.117 4.117 21 C 0.070 3.930 22 F -0.110 7.110 23 C -0.132 4.132 24 C -0.148 4.148 25 C 0.102 3.898 26 F -0.091 7.091 27 N 0.010 4.990 28 O -0.188 6.188 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.136 0.864 38 H 0.124 0.876 39 H 0.173 0.827 40 H 0.167 0.833 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 6.104 -13.755 1.839 15.161 hybrid contribution 0.266 -0.036 0.475 0.546 sum 6.370 -13.791 2.314 15.367 Atomic orbital electron populations 1.21682 0.96226 1.00894 1.01512 1.21742 0.94938 0.98375 1.01759 1.21414 0.81660 0.96134 1.02210 1.43555 1.04327 1.62558 1.04778 1.20167 1.07558 1.44118 0.87805 0.89200 1.26260 0.95237 0.92766 1.03865 1.70755 1.37976 1.09235 1.28039 0.83735 0.77536 0.76253 0.74300 1.20892 1.20365 1.20478 1.20328 0.88718 0.83494 0.84507 1.90588 1.69244 1.55886 1.31568 1.23341 0.94609 0.99445 0.83627 0.84716 1.22954 1.04011 0.93132 0.96916 1.23915 0.98387 0.92961 0.94347 1.17601 1.04249 0.89241 0.92149 1.21139 0.99430 0.92014 0.99071 1.17387 1.04093 0.88979 0.82578 1.91545 1.94019 1.76600 1.48820 1.21109 1.00510 1.01428 0.90171 1.20940 1.02473 0.91338 1.00034 1.17817 1.00628 0.89515 0.81843 1.91622 1.93015 1.77211 1.47236 1.78462 1.08645 0.90340 1.21596 1.91264 1.81494 1.15540 1.30537 0.93219 0.93081 0.92791 0.91759 0.92734 0.92127 0.89887 0.90609 0.86403 0.87595 0.82688 0.83336 0.83090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.91 37.16 0.37 -1.98 16 2 C -0.13 -2.54 6.26 -26.73 -0.17 -2.71 16 3 C 0.11 2.46 4.81 -4.04 -0.02 2.44 16 4 N -0.43 -10.18 2.42 -114.81 -0.28 -10.46 16 5 C -0.47 -10.84 7.99 -14.93 -0.12 -10.96 16 6 H 0.09 1.93 5.39 -52.48 -0.28 1.64 16 7 C 0.03 0.78 4.42 -17.47 -0.08 0.70 16 8 N -0.83 -20.94 12.42 55.50 0.69 -20.25 16 9 Si 1.06 20.56 30.06 -169.99 -5.11 15.45 16 10 H -0.28 -5.36 7.11 56.52 0.40 -4.95 16 11 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 12 H -0.28 -5.16 7.11 56.52 0.40 -4.76 16 13 C 0.44 10.73 7.04 -10.98 -0.08 10.65 16 14 O -0.59 -16.24 16.17 -13.32 -0.22 -16.45 16 15 C 0.05 1.07 3.33 -26.97 -0.09 0.98 16 16 H 0.14 2.66 8.02 -51.93 -0.42 2.24 16 17 C -0.13 -2.21 4.60 -26.48 -0.12 -2.33 16 18 C 0.09 1.63 7.15 -79.44 -0.57 1.06 16 19 C -0.03 -0.43 5.87 -104.98 -0.62 -1.04 16 20 C -0.10 -1.11 9.59 -39.10 -0.37 -1.48 16 21 C 0.09 0.91 7.29 -39.49 -0.29 0.63 16 22 F -0.13 -1.40 17.26 2.25 0.04 -1.36 16 23 C -0.11 -0.94 10.01 -39.44 -0.39 -1.34 16 24 C -0.13 -1.20 10.01 -39.58 -0.40 -1.60 16 25 C 0.12 1.63 7.29 -38.99 -0.28 1.34 16 26 F -0.11 -1.76 15.78 2.25 0.04 -1.72 16 27 N -0.25 -5.19 11.13 35.29 0.39 -4.80 16 28 O -0.17 -3.74 11.83 -30.28 -0.36 -4.10 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.06 1.42 7.43 -51.93 -0.39 1.04 16 35 H 0.08 1.93 5.77 -51.93 -0.30 1.63 16 36 H 0.28 7.39 7.97 -40.82 -0.33 7.06 16 37 H 0.12 2.02 6.25 -51.93 -0.32 1.70 16 38 H 0.11 1.46 8.14 -51.93 -0.42 1.03 16 39 H 0.16 1.63 7.37 -52.49 -0.39 1.24 16 40 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 41 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 357.13 15.07 5.38 5.38 Total: -1.00 -30.40 357.13 -7.25 -37.65 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -4.60 Total: 6.30 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -3.23 Total: -5.63 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: 0.80 Total: -35.51 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.57 Total: -20.55 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.07 Total: -3.09 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.11 Total: 15.45 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.40 -7.25 -37.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069695949.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.885 kcal (2) G-P(sol) polarization free energy of solvation -30.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds