Wall clock time and date at job start Tue Mar 31 2020 20:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47385 * 2 1 4 4 C 1.50698 * 109.47224 * 120.00534 * 2 1 3 5 5 H 1.08004 * 120.00197 * 120.00095 * 4 2 1 6 6 C 1.37875 * 119.99782 * 299.99926 * 4 2 1 7 7 N 1.31514 * 120.00036 * 180.02562 * 6 4 2 8 8 Si 1.86802 * 120.00105 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.47001 * 90.00135 * 8 6 4 10 10 H 1.48497 * 109.47074 * 209.99905 * 8 6 4 11 11 H 1.48497 * 109.47314 * 330.00157 * 8 6 4 12 12 N 1.46506 * 109.47298 * 240.00388 * 2 1 3 13 13 C 1.46492 * 119.99800 * 300.00126 * 12 2 1 14 14 C 1.34773 * 119.99968 * 119.99670 * 12 2 1 15 15 O 1.21283 * 120.00360 * 359.73034 * 14 12 2 16 16 C 1.50706 * 120.00081 * 180.02562 * 14 12 2 17 17 H 1.09000 * 110.85685 * 304.02634 * 16 14 12 18 18 C 1.54734 * 110.97186 * 67.82235 * 16 14 12 19 19 C 1.51788 * 102.50585 * 93.89751 * 18 16 14 20 20 C 1.47565 * 125.86089 * 195.43516 * 19 18 16 21 21 C 1.39640 * 120.15529 * 359.97438 * 20 19 18 22 22 C 1.38110 * 119.85030 * 179.97438 * 21 20 19 23 23 F 1.35095 * 119.91969 * 180.02562 * 22 21 20 24 24 C 1.38620 * 120.15600 * 0.02562 * 22 21 20 25 25 C 1.38237 * 120.31482 * 359.97438 * 24 22 21 26 26 C 1.38251 * 120.14703 * 359.79021 * 25 24 22 27 27 F 1.35098 * 120.07942 * 180.25212 * 26 25 24 28 28 N 1.29114 * 108.26767 * 15.40197 * 19 18 16 29 29 O 1.41383 * 112.87155 * 0.31298 * 28 19 18 30 30 H 1.08999 * 109.47043 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47065 * 299.99505 * 1 2 3 32 32 H 1.09005 * 109.47165 * 59.99636 * 1 2 3 33 33 H 0.96999 * 120.00614 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.47443 * 269.99328 * 13 12 2 35 35 H 1.08999 * 109.47479 * 30.00306 * 13 12 2 36 36 H 1.09006 * 109.47080 * 149.99714 * 13 12 2 37 37 H 1.08999 * 110.79384 * 212.15523 * 18 16 14 38 38 H 1.09006 * 110.79046 * 335.61798 * 18 16 14 39 39 H 1.07997 * 120.07140 * 0.02562 * 21 20 19 40 40 H 1.07997 * 119.84446 * 180.02562 * 24 22 21 41 41 H 1.07995 * 119.92891 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6992 -0.2395 2.4826 7 7 2.1380 -0.8593 3.5564 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8743 2.6993 10 1 0.9772 1.9951 3.9071 11 1 0.8491 2.1773 1.4924 12 7 2.0183 -0.6905 -1.1962 13 6 1.6644 -2.0930 -1.4281 14 6 2.7931 -0.0355 -2.0833 15 8 3.0821 1.1271 -1.8939 16 6 3.2951 -0.7456 -3.3142 17 1 3.8449 -1.6474 -3.0448 18 6 2.1299 -1.0744 -4.2778 19 6 2.1372 0.1153 -5.2204 20 6 1.0488 0.4950 -6.1417 21 6 -0.1193 -0.2679 -6.1997 22 6 -1.1342 0.0935 -7.0639 23 9 -2.2651 -0.6433 -7.1208 24 6 -0.9952 1.2105 -7.8729 25 6 0.1584 1.9705 -7.8209 26 6 1.1803 1.6232 -6.9570 27 9 2.3050 2.3698 -6.9036 28 7 3.2590 0.7383 -5.0771 29 8 4.1063 0.1317 -4.1216 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.9034 -0.5282 4.4375 34 1 2.4158 -2.7376 -0.9719 35 1 0.6904 -2.3001 -0.9849 36 1 1.6238 -2.2850 -2.5004 37 1 2.3255 -1.9994 -4.8202 38 1 1.1855 -1.1343 -3.7367 39 1 -0.2291 -1.1381 -5.5696 40 1 -1.7921 1.4888 -8.5465 41 1 0.2599 2.8397 -8.4537 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069702735.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:39 Heat of formation + Delta-G solvation = -52.130191 kcal Electronic energy + Delta-G solvation = -29438.206532 eV Core-core repulsion = 24957.541512 eV Total energy + Delta-G solvation = -4480.665019 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.37205 -49.19841 -40.89683 -39.27244 -38.42319 -35.66882 -33.99752 -33.08925 -31.54412 -31.23370 -30.16706 -29.77796 -26.55789 -25.27702 -24.77355 -24.54166 -22.99313 -21.47664 -20.55071 -18.91234 -18.01081 -17.74942 -17.57760 -17.25688 -16.74924 -16.32396 -16.21357 -15.83568 -15.70094 -15.40026 -15.22899 -14.81534 -14.49313 -14.33482 -14.09321 -13.69924 -13.44739 -13.11329 -13.07848 -13.02434 -12.68756 -12.65962 -12.32176 -12.28644 -11.95923 -11.93754 -11.73227 -11.69605 -11.21633 -10.90797 -10.76045 -10.60438 -10.20802 -9.71736 -9.55412 -9.40381 -9.08958 -8.75453 -8.69551 -7.89238 -6.20403 -4.21862 0.02166 0.46502 1.76514 2.63503 2.93803 3.05247 3.18452 3.33357 3.35162 3.41580 3.47202 3.66421 3.76734 3.97775 4.26991 4.29932 4.30917 4.33008 4.56236 4.60192 4.87832 5.00976 5.11378 5.15792 5.22992 5.26282 5.39637 5.42527 5.49690 5.51250 5.63487 5.79537 6.07346 6.14555 6.20035 6.21194 6.37278 6.73929 6.96638 7.10159 7.20831 7.53785 8.00123 8.36879 8.67299 8.80597 9.39953 10.92200 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014378 B = 0.003282 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.991243 B = 8530.405497 C = 9196.131302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.230 3.770 3 H 0.063 0.937 4 C -0.530 4.530 5 H 0.079 0.921 6 C 0.077 3.923 7 N -0.893 5.893 8 Si 0.882 3.118 9 H -0.276 1.276 10 H -0.293 1.293 11 H -0.264 1.264 12 N -0.581 5.581 13 C 0.074 3.926 14 C 0.490 3.510 15 O -0.525 6.525 16 C 0.027 3.973 17 H 0.142 0.858 18 C -0.138 4.138 19 C 0.100 3.900 20 C -0.038 4.038 21 C -0.096 4.096 22 C 0.090 3.910 23 F -0.130 7.130 24 C -0.108 4.108 25 C -0.127 4.127 26 C 0.128 3.872 27 F -0.111 7.111 28 N -0.246 5.246 29 O -0.156 6.156 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.032 0.968 33 H 0.267 0.733 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.056 0.944 37 H 0.118 0.882 38 H 0.114 0.886 39 H 0.154 0.846 40 H 0.151 0.849 41 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.141 -2.341 -24.662 26.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.128 3.872 3 H 0.080 0.920 4 C -0.568 4.568 5 H 0.097 0.903 6 C -0.126 4.126 7 N -0.530 5.530 8 Si 0.712 3.288 9 H -0.203 1.203 10 H -0.220 1.220 11 H -0.189 1.189 12 N -0.314 5.314 13 C -0.069 4.069 14 C 0.274 3.726 15 O -0.401 6.401 16 C -0.035 4.035 17 H 0.159 0.841 18 C -0.177 4.177 19 C -0.090 4.090 20 C -0.040 4.040 21 C -0.117 4.117 22 C 0.070 3.930 23 F -0.109 7.109 24 C -0.128 4.128 25 C -0.146 4.146 26 C 0.106 3.894 27 F -0.089 7.089 28 N 0.016 4.984 29 O -0.177 6.177 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.075 0.925 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.171 0.829 40 H 0.169 0.831 41 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -7.070 -0.856 -24.587 25.597 hybrid contribution -1.049 -0.144 0.858 1.363 sum -8.120 -1.000 -23.729 25.099 Atomic orbital electron populations 1.22463 0.98949 1.01109 0.99406 1.19330 0.90014 0.95227 0.82592 0.91969 1.21121 1.32940 1.14345 0.88386 0.90258 1.24854 0.95633 0.96517 0.95610 1.69863 1.44984 1.40160 0.98011 0.86934 0.80396 0.83867 0.77640 1.20318 1.21988 1.18853 1.47861 1.48905 1.11851 1.22820 1.21842 1.02638 0.82818 0.99616 1.20463 0.79967 0.87593 0.84553 1.90720 1.56837 1.16439 1.76128 1.23731 0.93052 0.95076 0.91685 0.84058 1.23112 1.01251 0.98323 0.95022 1.23875 0.94034 0.94508 0.96567 1.17532 0.93142 0.96056 0.97247 1.21059 0.91000 1.00778 0.98865 1.17380 0.83882 0.92563 0.99139 1.91555 1.48167 1.75695 1.95443 1.21168 0.98668 0.93662 0.99277 1.20989 0.92194 1.01798 0.99616 1.17812 0.84411 0.90338 0.96842 1.91637 1.48260 1.74184 1.94832 1.78576 1.01930 1.13931 1.03998 1.91350 1.25828 1.59167 1.41328 0.92398 0.92957 0.94871 0.92338 0.92243 0.90229 0.92538 0.86414 0.86749 0.82850 0.83149 0.82879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 8.65 37.16 0.32 -3.01 16 2 C 0.23 5.43 2.23 -69.08 -0.15 5.27 16 3 H 0.06 1.67 5.96 -51.93 -0.31 1.36 16 4 C -0.53 -14.37 8.95 -34.44 -0.31 -14.68 16 5 H 0.08 2.30 7.89 -52.48 -0.41 1.89 16 6 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 7 N -0.89 -26.59 13.96 55.43 0.77 -25.82 16 8 Si 0.88 21.67 24.37 -169.99 -4.14 17.52 16 9 H -0.28 -6.43 6.87 56.52 0.39 -6.05 16 10 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 11 H -0.26 -6.47 6.53 56.52 0.37 -6.10 16 12 N -0.58 -11.32 2.75 -175.26 -0.48 -11.81 16 13 C 0.07 1.06 9.13 59.84 0.55 1.60 16 14 C 0.49 9.77 7.06 -10.98 -0.08 9.69 16 15 O -0.53 -13.12 15.91 -13.31 -0.21 -13.33 16 16 C 0.03 0.40 3.31 -26.97 -0.09 0.31 16 17 H 0.14 1.66 8.04 -51.93 -0.42 1.24 16 18 C -0.14 -1.46 4.49 -26.43 -0.12 -1.58 16 19 C 0.10 1.30 7.15 -79.40 -0.57 0.73 16 20 C -0.04 -0.40 5.87 -104.98 -0.62 -1.01 16 21 C -0.10 -0.77 9.59 -39.11 -0.37 -1.15 16 22 C 0.09 0.68 7.29 -39.49 -0.29 0.39 16 23 F -0.13 -1.06 17.26 2.25 0.04 -1.02 16 24 C -0.11 -0.66 10.01 -39.44 -0.39 -1.06 16 25 C -0.13 -0.90 10.01 -39.58 -0.40 -1.30 16 26 C 0.13 1.34 7.29 -38.99 -0.28 1.05 16 27 F -0.11 -1.46 15.78 2.25 0.04 -1.43 16 28 N -0.25 -4.11 11.12 35.31 0.39 -3.72 16 29 O -0.16 -2.78 11.82 -30.23 -0.36 -3.14 16 30 H 0.06 1.08 6.66 -51.93 -0.35 0.74 16 31 H 0.05 1.15 3.27 -51.93 -0.17 0.98 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 1.12 6.43 -51.93 -0.33 0.79 16 36 H 0.06 0.55 4.52 -51.93 -0.23 0.32 16 37 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.11 1.09 6.19 -51.93 -0.32 0.76 16 39 H 0.15 0.91 7.37 -52.49 -0.39 0.52 16 40 H 0.15 0.52 8.06 -52.49 -0.42 0.10 16 41 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 LS Contribution 345.14 15.07 5.20 5.20 Total: -1.00 -36.19 345.14 -5.88 -42.07 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: -4.23 Total: -1.87 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -2.90 Total: -2.66 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: 0.68 Total: -41.34 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.57 Total: -16.48 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.07 Total: -2.44 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.14 Total: 17.52 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -36.19 -5.88 -42.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069702735.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.060 kcal (2) G-P(sol) polarization free energy of solvation -36.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds