Wall clock time and date at job start Tue Mar 31 2020 20:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47385 * 2 1 4 4 C 1.50698 * 109.47224 * 120.00534 * 2 1 3 5 5 H 1.08004 * 120.00197 * 120.00095 * 4 2 1 6 6 C 1.37875 * 119.99782 * 299.99926 * 4 2 1 7 7 N 1.31514 * 120.00036 * 180.02562 * 6 4 2 8 8 Si 1.86802 * 120.00105 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.47001 * 90.00135 * 8 6 4 10 10 H 1.48497 * 109.47074 * 209.99905 * 8 6 4 11 11 H 1.48497 * 109.47314 * 330.00157 * 8 6 4 12 12 N 1.46506 * 109.47298 * 240.00388 * 2 1 3 13 13 C 1.46492 * 119.99800 * 300.00126 * 12 2 1 14 14 C 1.34773 * 119.99968 * 119.99670 * 12 2 1 15 15 O 1.21283 * 120.00360 * 359.73034 * 14 12 2 16 16 C 1.50706 * 120.00081 * 180.02562 * 14 12 2 17 17 H 1.09000 * 110.85685 * 304.02634 * 16 14 12 18 18 C 1.54734 * 110.97186 * 67.82235 * 16 14 12 19 19 C 1.51788 * 102.50585 * 93.89751 * 18 16 14 20 20 C 1.47565 * 125.86089 * 195.43516 * 19 18 16 21 21 C 1.39640 * 120.15529 * 359.97438 * 20 19 18 22 22 C 1.38110 * 119.85030 * 179.97438 * 21 20 19 23 23 F 1.35095 * 119.91969 * 180.02562 * 22 21 20 24 24 C 1.38620 * 120.15600 * 0.02562 * 22 21 20 25 25 C 1.38237 * 120.31482 * 359.97438 * 24 22 21 26 26 C 1.38251 * 120.14703 * 359.79021 * 25 24 22 27 27 F 1.35098 * 120.07942 * 180.25212 * 26 25 24 28 28 N 1.29114 * 108.26767 * 15.40197 * 19 18 16 29 29 O 1.41383 * 112.87155 * 0.31298 * 28 19 18 30 30 H 1.08999 * 109.47043 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47065 * 299.99505 * 1 2 3 32 32 H 1.09005 * 109.47165 * 59.99636 * 1 2 3 33 33 H 0.96999 * 120.00614 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.47443 * 269.99328 * 13 12 2 35 35 H 1.08999 * 109.47479 * 30.00306 * 13 12 2 36 36 H 1.09006 * 109.47080 * 149.99714 * 13 12 2 37 37 H 1.08999 * 110.79384 * 212.15523 * 18 16 14 38 38 H 1.09006 * 110.79046 * 335.61798 * 18 16 14 39 39 H 1.07997 * 120.07140 * 0.02562 * 21 20 19 40 40 H 1.07997 * 119.84446 * 180.02562 * 24 22 21 41 41 H 1.07995 * 119.92891 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6992 -0.2395 2.4826 7 7 2.1380 -0.8593 3.5564 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8743 2.6993 10 1 0.9772 1.9951 3.9071 11 1 0.8491 2.1773 1.4924 12 7 2.0183 -0.6905 -1.1962 13 6 1.6644 -2.0930 -1.4281 14 6 2.7931 -0.0355 -2.0833 15 8 3.0821 1.1271 -1.8939 16 6 3.2951 -0.7456 -3.3142 17 1 3.8449 -1.6474 -3.0448 18 6 2.1299 -1.0744 -4.2778 19 6 2.1372 0.1153 -5.2204 20 6 1.0488 0.4950 -6.1417 21 6 -0.1193 -0.2679 -6.1997 22 6 -1.1342 0.0935 -7.0639 23 9 -2.2651 -0.6433 -7.1208 24 6 -0.9952 1.2105 -7.8729 25 6 0.1584 1.9705 -7.8209 26 6 1.1803 1.6232 -6.9570 27 9 2.3050 2.3698 -6.9036 28 7 3.2590 0.7383 -5.0771 29 8 4.1063 0.1317 -4.1216 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.9034 -0.5282 4.4375 34 1 2.4158 -2.7376 -0.9719 35 1 0.6904 -2.3001 -0.9849 36 1 1.6238 -2.2850 -2.5004 37 1 2.3255 -1.9994 -4.8202 38 1 1.1855 -1.1343 -3.7367 39 1 -0.2291 -1.1381 -5.5696 40 1 -1.7921 1.4888 -8.5465 41 1 0.2599 2.8397 -8.4537 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069702735.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:39 Heat of formation + Delta-G solvation = -76.909432 kcal Electronic energy + Delta-G solvation = -29439.281040 eV Core-core repulsion = 24957.541512 eV Total energy + Delta-G solvation = -4481.739528 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.03765 -49.94891 -42.06266 -40.26416 -39.52965 -37.35257 -35.01048 -34.87128 -33.10799 -31.99883 -31.21466 -30.78952 -27.86533 -27.19445 -26.01446 -25.22565 -23.76158 -22.93748 -21.48683 -20.35959 -19.07393 -18.78072 -18.54783 -18.36538 -18.10915 -17.53288 -17.19362 -17.02521 -16.77881 -16.41126 -16.38485 -15.86443 -15.60458 -15.41165 -15.08284 -14.91022 -14.63168 -14.33858 -14.17848 -14.13842 -14.02034 -13.82153 -13.67652 -13.59004 -13.21273 -13.08875 -12.99204 -12.92117 -12.60838 -12.35795 -12.09006 -11.84548 -11.70989 -11.56436 -11.38947 -10.83286 -10.57924 -10.06005 -9.61602 -9.51119 -8.38600 -6.43227 -0.68152 -0.12800 0.94010 1.21723 1.33069 1.40580 1.41568 1.80334 2.04956 2.24047 2.30569 2.64524 2.94279 2.96790 3.05705 3.21565 3.26449 3.42035 3.65076 3.78546 3.99258 4.01252 4.23547 4.28958 4.34893 4.42757 4.45497 4.54170 4.57295 4.69912 4.71388 4.77146 4.86728 4.90543 4.95451 4.96599 5.07105 5.27493 5.43817 5.61556 5.63285 6.07553 6.17151 6.55885 6.61554 7.11413 7.26144 8.77285 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014378 B = 0.003282 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.991243 B = 8530.405497 C = 9196.131302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.230 3.770 3 H 0.021 0.979 4 C -0.527 4.527 5 H 0.049 0.951 6 C 0.025 3.975 7 N -0.937 5.937 8 Si 0.938 3.062 9 H -0.247 1.247 10 H -0.297 1.297 11 H -0.270 1.270 12 N -0.584 5.584 13 C 0.066 3.934 14 C 0.479 3.521 15 O -0.590 6.590 16 C 0.028 3.972 17 H 0.174 0.826 18 C -0.129 4.129 19 C 0.118 3.882 20 C -0.064 4.064 21 C -0.084 4.084 22 C 0.086 3.914 23 F -0.131 7.131 24 C -0.089 4.089 25 C -0.120 4.120 26 C 0.100 3.900 27 F -0.136 7.136 28 N -0.304 5.304 29 O -0.195 6.195 30 H 0.080 0.920 31 H 0.040 0.960 32 H 0.056 0.944 33 H 0.269 0.731 34 H 0.054 0.946 35 H 0.085 0.915 36 H 0.110 0.890 37 H 0.172 0.828 38 H 0.134 0.866 39 H 0.179 0.821 40 H 0.184 0.816 41 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.555 -3.799 -27.388 29.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.127 3.873 3 H 0.039 0.961 4 C -0.565 4.565 5 H 0.067 0.933 6 C -0.174 4.174 7 N -0.576 5.576 8 Si 0.765 3.235 9 H -0.172 1.172 10 H -0.224 1.224 11 H -0.195 1.195 12 N -0.315 5.315 13 C -0.075 4.075 14 C 0.266 3.734 15 O -0.471 6.471 16 C -0.033 4.033 17 H 0.191 0.809 18 C -0.168 4.168 19 C -0.071 4.071 20 C -0.067 4.067 21 C -0.105 4.105 22 C 0.067 3.933 23 F -0.109 7.109 24 C -0.108 4.108 25 C -0.139 4.139 26 C 0.079 3.921 27 F -0.115 7.115 28 N -0.046 5.046 29 O -0.212 6.212 30 H 0.099 0.901 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.128 0.872 37 H 0.189 0.811 38 H 0.152 0.848 39 H 0.196 0.804 40 H 0.201 0.799 41 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -10.496 -2.377 -27.325 29.367 hybrid contribution -0.045 0.270 1.578 1.602 sum -10.541 -2.108 -25.746 27.900 Atomic orbital electron populations 1.22300 0.95978 1.02817 0.99941 1.18981 0.92210 0.93081 0.83041 0.96071 1.21346 1.31874 1.13229 0.90057 0.93268 1.25602 0.97140 0.99235 0.95399 1.69986 1.46953 1.42086 0.98608 0.86031 0.80311 0.80268 0.76858 1.17232 1.22438 1.19477 1.47903 1.48572 1.13735 1.21292 1.22198 1.02612 0.79417 1.03271 1.21545 0.78834 0.87106 0.85893 1.90678 1.59067 1.19523 1.77831 1.23891 0.94988 0.94632 0.89836 0.80886 1.23304 1.00147 0.99375 0.93933 1.24487 0.93052 0.94009 0.95574 1.17633 0.93649 0.97299 0.98079 1.21249 0.89753 1.00760 0.98699 1.17500 0.83698 0.92889 0.99259 1.91565 1.48133 1.75779 1.95442 1.21550 0.98631 0.92228 0.98377 1.21249 0.91337 1.02481 0.98809 1.18330 0.84658 0.90792 0.98360 1.91575 1.49828 1.74906 1.95155 1.78613 1.04027 1.16102 1.05811 1.91313 1.27554 1.60195 1.42117 0.90084 0.94121 0.92534 0.92199 0.92722 0.89626 0.87190 0.81081 0.84809 0.80378 0.79887 0.80574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.99 8.65 71.98 0.62 -5.36 16 2 C 0.23 10.91 2.23 44.24 0.10 11.01 16 3 H 0.02 1.19 5.96 -2.38 -0.01 1.17 16 4 C -0.53 -29.19 8.95 25.60 0.23 -28.96 16 5 H 0.05 2.95 7.89 -2.91 -0.02 2.93 16 6 C 0.03 1.45 5.45 84.65 0.46 1.91 16 7 N -0.94 -57.13 13.96 21.45 0.30 -56.83 16 8 Si 0.94 45.12 24.37 68.60 1.67 46.79 16 9 H -0.25 -10.68 6.87 99.48 0.68 -10.00 16 10 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 11 H -0.27 -13.12 6.53 99.48 0.65 -12.47 16 12 N -0.58 -22.27 2.75 -826.80 -2.27 -24.54 16 13 C 0.07 1.69 9.13 127.77 1.17 2.86 16 14 C 0.48 19.22 7.06 87.66 0.62 19.84 16 15 O -0.59 -30.99 15.91 15.00 0.24 -30.75 16 16 C 0.03 0.80 3.31 30.44 0.10 0.91 16 17 H 0.17 3.63 8.04 -2.39 -0.02 3.61 16 18 C -0.13 -2.25 4.49 30.79 0.14 -2.11 16 19 C 0.12 2.90 7.15 45.77 0.33 3.22 16 20 C -0.06 -1.23 5.87 -20.10 -0.12 -1.35 16 21 C -0.08 -1.02 9.59 22.58 0.22 -0.81 16 22 C 0.09 0.94 7.29 22.33 0.16 1.10 16 23 F -0.13 -1.56 17.26 44.97 0.78 -0.79 16 24 C -0.09 -0.72 10.01 22.36 0.22 -0.49 16 25 C -0.12 -1.38 10.01 22.27 0.22 -1.15 16 26 C 0.10 1.99 7.29 22.65 0.17 2.16 16 27 F -0.14 -3.71 15.78 44.97 0.71 -3.00 16 28 N -0.30 -10.35 11.12 -42.20 -0.47 -10.82 16 29 O -0.19 -7.10 11.82 -20.26 -0.24 -7.34 16 30 H 0.08 2.77 6.66 -2.39 -0.02 2.76 16 31 H 0.04 1.69 3.27 -2.39 -0.01 1.68 16 32 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 33 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 34 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.09 2.11 6.43 -2.39 -0.02 2.09 16 36 H 0.11 1.59 4.52 -2.38 -0.01 1.58 16 37 H 0.17 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.13 1.84 6.19 -2.38 -0.01 1.83 16 39 H 0.18 1.16 7.37 -2.91 -0.02 1.13 16 40 H 0.18 0.30 8.06 -2.91 -0.02 0.28 16 41 H 0.18 1.12 8.06 -2.91 -0.02 1.09 16 Total: -1.00 -87.61 345.14 6.37 -81.23 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: 1.02 Total: 3.27 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: 4.64 Total: 2.77 kcal Atomic # 7 Polarization: -89.75 SS G_CDS: -2.44 Total: -92.19 kcal Atomic # 8 Polarization: -38.09 SS G_CDS: 0.00 Total: -38.09 kcal Atomic # 9 Polarization: -5.27 SS G_CDS: 1.49 Total: -3.78 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.67 Total: 46.79 kcal Total: -87.61 6.37 -81.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069702735.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.325 kcal (2) G-P(sol) polarization free energy of solvation -87.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds