Wall clock time and date at job start Tue Mar 31 2020 21:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.46812 * 2 1 4 4 O 1.42899 * 109.46756 * 120.00242 * 2 1 3 5 5 C 1.35906 * 116.99425 * 275.43482 * 4 2 1 6 6 C 1.38763 * 120.04419 * 185.21748 * 5 4 2 7 7 C 1.38132 * 119.96870 * 180.02562 * 6 5 4 8 8 C 1.38264 * 120.06716 * 359.97438 * 7 6 5 9 9 C 1.38361 * 120.10031 * 0.02562 * 8 7 6 10 10 Cl 1.73602 * 119.98512 * 180.02562 * 9 8 7 11 11 C 1.38278 * 120.02844 * 359.72882 * 9 8 7 12 12 C 1.50703 * 109.47054 * 239.99895 * 2 1 3 13 13 O 1.21273 * 119.99677 * 245.00206 * 12 2 1 14 14 N 1.34776 * 119.99695 * 65.00164 * 12 2 1 15 15 C 1.46964 * 120.59962 * 359.71808 * 14 12 2 16 16 C 1.53812 * 108.39698 * 124.75494 * 15 14 12 17 17 N 1.46961 * 108.57922 * 49.64090 * 16 15 14 18 18 C 1.36940 * 120.59502 * 124.61930 * 17 16 15 19 19 H 1.07996 * 120.00415 * 208.88053 * 18 17 16 20 20 C 1.38816 * 119.99731 * 28.87445 * 18 17 16 21 21 N 1.31620 * 120.00014 * 16.09665 * 20 18 17 22 22 Si 1.86803 * 120.00102 * 196.09151 * 20 18 17 23 23 H 1.48501 * 109.46742 * 90.00430 * 22 20 18 24 24 H 1.48499 * 109.46928 * 210.00603 * 22 20 18 25 25 H 1.48500 * 109.47109 * 330.00647 * 22 20 18 26 26 C 1.46959 * 118.81397 * 304.64921 * 17 16 15 27 27 C 1.46969 * 120.59074 * 179.97438 * 14 12 2 28 28 H 1.09000 * 109.46571 * 60.00270 * 1 2 3 29 29 H 1.09000 * 109.46813 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47149 * 300.00092 * 1 2 3 31 31 H 1.07998 * 120.01606 * 359.97438 * 6 5 4 32 32 H 1.08005 * 119.96430 * 179.97438 * 7 6 5 33 33 H 1.08007 * 119.95010 * 179.97438 * 8 7 6 34 34 H 1.07999 * 120.03596 * 180.29939 * 11 9 8 35 35 H 1.08994 * 109.60978 * 244.54606 * 15 14 12 36 36 H 1.09000 * 109.60726 * 5.05311 * 15 14 12 37 37 H 1.08996 * 109.74273 * 289.84997 * 16 15 14 38 38 H 1.09008 * 109.52752 * 169.30565 * 16 15 14 39 39 H 0.96997 * 120.00338 * 179.97438 * 21 20 18 40 40 H 1.09006 * 109.60918 * 295.47667 * 26 17 16 41 41 H 1.08999 * 109.61195 * 174.97457 * 26 17 16 42 42 H 1.08997 * 109.60944 * 354.94889 * 27 14 12 43 43 H 1.08996 * 109.61302 * 115.45990 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.1038 0.0604 2.3064 6 6 2.6598 -0.4993 3.4479 7 6 2.7576 0.2480 4.6054 8 6 2.3025 1.5534 4.6277 9 6 1.7476 2.1143 3.4912 10 17 1.1777 3.7538 3.5223 11 6 1.6523 1.3715 2.3287 12 6 2.0324 -0.7104 -1.2305 13 8 2.6530 -1.7467 -1.1214 14 7 1.7919 -0.1942 -2.4520 15 6 1.0360 1.0575 -2.5996 16 6 1.8887 2.0466 -3.4122 17 7 2.3725 1.3648 -4.6208 18 6 2.1275 1.8887 -5.8620 19 1 2.0448 1.2349 -6.7176 20 6 1.9851 3.2605 -6.0205 21 7 2.3899 4.0781 -5.0719 22 14 1.2190 3.9459 -7.5803 23 1 -0.2501 4.0649 -7.3991 24 1 1.7927 5.2855 -7.8661 25 1 1.5054 3.0323 -8.7153 26 6 3.1235 0.1101 -4.4736 27 6 2.2762 -0.8758 -3.6606 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.0152 -1.5190 3.4315 32 1 3.1901 -0.1878 5.4940 33 1 2.3795 2.1359 5.5340 34 1 1.2236 1.8108 1.4401 35 1 0.1007 0.8604 -3.1233 36 1 0.8258 1.4761 -1.6154 37 1 2.7378 2.3782 -2.8145 38 1 1.2799 2.9053 -3.6955 39 1 2.2908 5.0366 -5.1827 40 1 4.0606 0.3038 -3.9515 41 1 3.3304 -0.3100 -5.4578 42 1 2.8852 -1.7342 -3.3773 43 1 1.4274 -1.2077 -4.2585 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071138071.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:53 Heat of formation + Delta-G solvation = -13.004786 kcal Electronic energy + Delta-G solvation = -27282.004582 eV Core-core repulsion = 23354.832847 eV Total energy + Delta-G solvation = -3927.171734 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.85631 -39.56517 -37.84972 -36.80498 -36.45925 -34.14142 -32.63131 -31.21287 -30.88318 -30.21885 -29.76118 -27.14427 -25.00050 -23.69066 -23.15231 -22.88233 -22.25968 -20.48816 -18.92610 -18.73587 -17.29754 -16.62630 -16.24426 -16.01655 -15.87181 -15.34036 -15.00803 -14.78456 -14.63074 -14.15335 -13.98117 -13.77208 -13.58613 -13.37881 -13.33386 -13.17475 -12.58462 -12.54984 -12.23235 -12.09245 -11.79011 -11.61410 -11.40455 -11.23796 -11.17969 -11.00122 -10.90037 -10.82631 -10.55604 -10.32101 -10.09518 -9.92130 -9.45505 -9.14781 -8.67849 -8.48038 -8.37958 -6.79241 -5.92610 -3.38545 0.86540 1.05307 1.85995 2.55641 2.75765 3.29738 3.36634 3.37460 3.38434 3.55356 4.36955 4.41887 4.49814 4.61405 4.75136 4.79210 4.82580 5.02046 5.14263 5.21122 5.26623 5.33551 5.42321 5.45579 5.63486 5.74683 5.83463 5.86172 5.87638 5.96630 5.99442 6.06444 6.09439 6.22793 6.31202 6.33788 6.69431 6.81248 7.06096 7.13440 7.35388 7.64977 7.72913 8.28730 8.36581 9.04698 9.66589 10.23466 11.15168 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013681 B = 0.003068 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.098007 B = 9123.555390 C =10669.602733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.066 3.934 3 H 0.100 0.900 4 O -0.279 6.279 5 C 0.149 3.851 6 C -0.147 4.147 7 C -0.068 4.068 8 C -0.153 4.153 9 C 0.007 3.993 10 Cl -0.066 7.066 11 C -0.206 4.206 12 C 0.517 3.483 13 O -0.536 6.536 14 N -0.590 5.590 15 C 0.070 3.930 16 C 0.157 3.843 17 N -0.591 5.591 18 C -0.257 4.257 19 H 0.069 0.931 20 C 0.004 3.996 21 N -0.903 5.903 22 Si 0.906 3.094 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.278 1.278 26 C 0.131 3.869 27 C 0.097 3.903 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.134 0.866 34 H 0.142 0.858 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.025 0.975 38 H 0.103 0.897 39 H 0.256 0.744 40 H 0.024 0.976 41 H 0.069 0.931 42 H 0.084 0.916 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.870 -4.951 17.893 18.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.006 3.994 3 H 0.118 0.882 4 O -0.191 6.191 5 C 0.103 3.897 6 C -0.166 4.166 7 C -0.086 4.086 8 C -0.172 4.172 9 C -0.020 4.020 10 Cl -0.037 7.037 11 C -0.225 4.225 12 C 0.302 3.698 13 O -0.413 6.413 14 N -0.323 5.323 15 C -0.054 4.054 16 C 0.030 3.970 17 N -0.313 5.313 18 C -0.386 4.386 19 H 0.086 0.914 20 C -0.195 4.195 21 N -0.547 5.547 22 Si 0.735 3.265 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.204 1.204 26 C 0.004 3.996 27 C -0.026 4.026 28 H 0.110 0.890 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.156 0.844 32 H 0.157 0.843 33 H 0.152 0.848 34 H 0.160 0.840 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.043 0.957 38 H 0.121 0.879 39 H 0.066 0.934 40 H 0.042 0.958 41 H 0.087 0.913 42 H 0.102 0.898 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.535 -5.367 17.860 18.981 hybrid contribution -0.542 0.989 -0.858 1.417 sum -4.077 -4.378 17.001 18.023 Atomic orbital electron populations 1.22538 0.92519 1.04591 1.04495 1.22261 0.95922 0.97238 0.83947 0.88241 1.86235 1.80552 1.36820 1.15484 1.18949 0.94163 0.89501 0.87128 1.20587 1.03174 1.01866 0.90939 1.20915 0.97261 0.92980 0.97468 1.20962 1.02366 0.96227 0.97683 1.20654 0.99789 0.86461 0.95074 1.98389 1.87533 1.19028 1.98735 1.21219 1.07800 0.94363 0.99161 1.19853 0.80532 0.85382 0.83991 1.90680 1.40930 1.23637 1.86054 1.47945 1.54356 1.25056 1.04992 1.23043 0.96348 0.85161 1.00814 1.21293 0.95796 0.93462 0.86456 1.43974 1.61076 1.23419 1.02869 1.19221 1.43580 0.89893 0.85924 0.91376 1.25101 1.00179 0.96353 0.97818 1.69989 1.48025 1.02533 1.34112 0.86238 0.79091 0.78297 0.82824 1.21314 1.21680 1.20354 1.21312 0.92829 0.87750 0.97718 1.22255 0.99160 0.96280 0.84910 0.89004 0.90650 0.90764 0.84369 0.84332 0.84837 0.84018 0.91164 0.90883 0.95731 0.87929 0.93402 0.95758 0.91290 0.89811 0.91604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.06 8.73 37.16 0.32 -1.74 16 2 C 0.07 0.92 1.81 -27.88 -0.05 0.87 16 3 H 0.10 1.31 5.64 -51.93 -0.29 1.01 16 4 O -0.28 -4.12 9.34 -39.31 -0.37 -4.49 16 5 C 0.15 1.87 6.60 -39.22 -0.26 1.61 16 6 C -0.15 -1.55 9.99 -39.43 -0.39 -1.95 16 7 C -0.07 -0.58 10.04 -39.61 -0.40 -0.98 16 8 C -0.15 -1.40 9.83 -39.53 -0.39 -1.79 16 9 C 0.01 0.08 6.32 -39.52 -0.25 -0.17 16 10 Cl -0.07 -0.69 28.95 -51.86 -1.50 -2.19 16 11 C -0.21 -2.39 8.01 -39.40 -0.32 -2.71 16 12 C 0.52 8.99 7.12 -10.98 -0.08 8.91 16 13 O -0.54 -11.04 15.91 -14.30 -0.23 -11.26 16 14 N -0.59 -10.22 2.94 -172.25 -0.51 -10.73 16 15 C 0.07 1.17 5.22 -3.37 -0.02 1.15 16 16 C 0.16 3.38 5.52 -3.37 -0.02 3.36 16 17 N -0.59 -13.88 2.97 -171.80 -0.51 -14.39 16 18 C -0.26 -6.62 9.58 -15.06 -0.14 -6.77 16 19 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 20 C 0.00 0.12 4.94 -17.43 -0.09 0.03 16 21 N -0.90 -24.70 11.16 55.49 0.62 -24.09 16 22 Si 0.91 20.63 29.58 -169.99 -5.03 15.60 16 23 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 C 0.13 2.65 6.67 -3.62 -0.02 2.63 16 27 C 0.10 1.73 6.59 -3.62 -0.02 1.71 16 28 H 0.09 0.97 5.36 -51.93 -0.28 0.69 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.72 6.90 -51.93 -0.36 0.36 16 31 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 32 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 33 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 34 H 0.14 1.56 5.43 -52.49 -0.28 1.27 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.07 0.99 4.56 -51.93 -0.24 0.75 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.10 2.45 5.99 -51.92 -0.31 2.14 16 39 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 1.33 7.93 -51.93 -0.41 0.92 16 42 H 0.08 1.47 6.99 -51.93 -0.36 1.10 16 43 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 359.01 15.07 5.41 5.41 Total: -1.00 -30.63 359.01 -9.70 -40.33 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -5.47 Total: 1.63 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -2.12 Total: 4.17 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: -0.40 Total: -49.20 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.59 Total: -15.75 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.60 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.50 Total: -2.19 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.63 -9.70 -40.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071138071.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.329 kcal (2) G-P(sol) polarization free energy of solvation -30.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds