Wall clock time and date at job start Tue Mar 31 2020 20:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.50684 * 2 1 4 4 C 1.53093 * 109.50751 * 239.90908 * 2 1 3 5 5 O 1.43014 * 109.26030 * 296.91255 * 4 2 1 6 6 C 1.43022 * 113.73826 * 301.33273 * 5 4 2 7 7 H 1.09000 * 109.50584 * 298.68671 * 6 5 4 8 8 C 1.50704 * 109.50606 * 178.60431 * 6 5 4 9 9 C 1.38236 * 120.00715 * 334.99453 * 8 6 5 10 10 C 1.38219 * 120.01488 * 180.29915 * 9 8 6 11 11 C 1.38265 * 120.02062 * 359.45075 * 10 9 8 12 12 C 1.38187 * 120.01764 * 0.54900 * 11 10 9 13 13 C 1.38326 * 120.00580 * 155.02124 * 8 6 5 14 14 Cl 1.73602 * 120.01208 * 359.95452 * 13 8 6 15 15 C 1.53096 * 109.25913 * 58.66848 * 6 5 4 16 16 N 1.47013 * 109.50948 * 120.12498 * 2 1 3 17 17 C 1.46903 * 111.00112 * 297.54927 * 16 2 1 18 18 C 1.50704 * 109.46582 * 293.76026 * 17 16 2 19 19 O 1.21298 * 120.00049 * 353.80411 * 18 17 16 20 20 N 1.34779 * 120.00089 * 173.80823 * 18 17 16 21 21 C 1.37092 * 119.99943 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00498 * 0.02562 * 21 20 18 23 23 C 1.38959 * 119.99696 * 179.97438 * 21 20 18 24 24 N 1.31410 * 119.99965 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99964 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47029 * 89.99795 * 25 23 21 27 27 H 1.48497 * 109.47341 * 209.99931 * 25 23 21 28 28 H 1.48501 * 109.47140 * 330.00467 * 25 23 21 29 29 H 1.09004 * 109.47198 * 180.09551 * 1 2 3 30 30 H 1.09001 * 109.46880 * 300.08789 * 1 2 3 31 31 H 1.09000 * 109.47053 * 60.09051 * 1 2 3 32 32 H 1.09000 * 109.50688 * 176.97845 * 4 2 1 33 33 H 1.08997 * 109.50943 * 56.84551 * 4 2 1 34 34 H 1.08003 * 119.99185 * 0.02562 * 9 8 6 35 35 H 1.07993 * 119.98579 * 179.70635 * 10 9 8 36 36 H 1.07999 * 119.98755 * 180.27617 * 11 10 9 37 37 H 1.07994 * 120.00833 * 179.69803 * 12 11 10 38 38 H 1.08994 * 109.50799 * 63.08372 * 15 6 5 39 39 H 1.08998 * 109.50667 * 183.22219 * 15 6 5 40 40 H 1.08997 * 109.47734 * 53.75650 * 17 16 2 41 41 H 1.08996 * 109.47226 * 173.76679 * 17 16 2 42 42 H 0.97003 * 119.99777 * 359.97438 * 20 18 17 43 43 H 0.96996 * 120.00189 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0412 -0.7235 -1.2486 5 8 1.6227 -2.0904 -1.2063 6 6 2.0837 -2.7982 -0.0522 7 1 3.1736 -2.8126 -0.0454 8 6 1.5621 -4.2117 -0.0871 9 6 0.4063 -4.5050 -0.7864 10 6 -0.0757 -5.8001 -0.8134 11 6 0.6041 -6.8051 -0.1504 12 6 1.7595 -6.5132 0.5491 13 6 2.2394 -5.2157 0.5812 14 17 3.6911 -4.8482 1.4593 15 6 1.5729 -2.0957 1.2085 16 7 2.0209 -0.6955 1.1986 17 6 1.5989 0.0008 2.4213 18 6 2.2734 1.3467 2.4911 19 8 3.1151 1.6465 1.6707 20 7 1.9416 2.2171 3.4651 21 6 2.5556 3.4412 3.5289 22 1 3.3050 3.7082 2.7984 23 6 2.2131 4.3388 4.5328 24 7 1.3009 4.0141 5.4213 25 14 3.0502 6.0064 4.6202 26 1 2.2782 6.9904 3.8195 27 1 3.1101 6.4568 6.0340 28 1 4.4278 5.8979 4.0764 29 1 -0.3634 -1.0277 0.0017 30 1 -0.3633 0.5152 0.8892 31 1 -0.3633 0.5124 -0.8908 32 1 3.1298 -0.6769 -1.2761 33 1 1.6331 -0.2454 -2.1390 34 1 -0.1226 -3.7211 -1.3082 35 1 -0.9812 -6.0278 -1.3560 36 1 0.2294 -7.8177 -0.1755 37 1 2.2876 -7.2975 1.0710 38 1 0.4836 -2.1292 1.2278 39 1 1.9689 -2.5982 2.0910 40 1 0.5175 0.1368 2.4072 41 1 1.8793 -0.5917 3.2921 42 1 1.2683 1.9775 4.1210 43 1 1.0615 4.6408 6.1219 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111309233.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:00 Heat of formation + Delta-G solvation = -48.368389 kcal Electronic energy + Delta-G solvation = -27290.287954 eV Core-core repulsion = 23361.582738 eV Total energy + Delta-G solvation = -3928.705215 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.46737 -39.20673 -37.94242 -36.61664 -35.53894 -33.82814 -33.21401 -31.27276 -30.99292 -30.65207 -28.69758 -26.84046 -25.50075 -24.12471 -23.65034 -22.83942 -21.57908 -19.51665 -18.82167 -17.85543 -17.47650 -16.59349 -16.25096 -15.94260 -15.81209 -15.47991 -14.86027 -14.62717 -14.54312 -14.09655 -14.04711 -13.98926 -13.69845 -13.31620 -13.28936 -12.85295 -12.63348 -12.25651 -11.96281 -11.80511 -11.70722 -11.57889 -11.56308 -11.44299 -11.24952 -11.12206 -10.89477 -10.76915 -10.39684 -10.24810 -10.21036 -9.67029 -9.46165 -9.12643 -8.90230 -8.40999 -7.97596 -7.86951 -6.41665 -3.82387 0.85935 1.00336 1.94189 3.17447 3.26225 3.31281 3.32787 3.63186 3.88590 3.91224 4.21767 4.52666 4.64881 4.70567 4.90242 5.00961 5.03983 5.10472 5.11958 5.22268 5.23042 5.29906 5.37964 5.56839 5.61802 5.65978 5.69849 5.73057 5.79460 5.87990 5.93795 5.95863 6.02463 6.13063 6.16469 6.26131 6.31791 6.45382 6.52648 7.15305 7.20735 7.34109 7.55169 8.06374 8.61925 9.18246 9.54686 10.06451 10.76136 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.020596 B = 0.002668 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.177118 B =10493.167178 C =10985.947734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.040 3.960 3 H 0.117 0.883 4 C 0.074 3.926 5 O -0.380 6.380 6 C 0.135 3.865 7 H 0.084 0.916 8 C -0.069 4.069 9 C -0.081 4.081 10 C -0.119 4.119 11 C -0.110 4.110 12 C -0.113 4.113 13 C -0.029 4.029 14 Cl -0.060 7.060 15 C 0.029 3.971 16 N -0.503 5.503 17 C 0.042 3.958 18 C 0.445 3.555 19 O -0.577 6.577 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.269 1.269 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.139 0.861 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.134 0.866 38 H 0.045 0.955 39 H 0.084 0.916 40 H 0.053 0.947 41 H 0.089 0.911 42 H 0.392 0.608 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.394 -20.541 -10.303 23.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.068 4.068 3 H 0.135 0.865 4 C -0.003 4.003 5 O -0.299 6.299 6 C 0.077 3.923 7 H 0.101 0.899 8 C -0.070 4.070 9 C -0.100 4.100 10 C -0.137 4.137 11 C -0.128 4.128 12 C -0.131 4.131 13 C -0.055 4.055 14 Cl -0.031 7.031 15 C -0.099 4.099 16 N -0.227 5.227 17 C -0.089 4.089 18 C 0.231 3.769 19 O -0.461 6.461 20 N -0.201 5.201 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.116 0.884 34 H 0.156 0.844 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.152 0.848 38 H 0.063 0.937 39 H 0.102 0.898 40 H 0.070 0.930 41 H 0.107 0.893 42 H 0.225 0.775 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.343 -20.259 -10.755 23.179 hybrid contribution -0.724 0.852 0.997 1.498 sum -4.066 -19.407 -9.757 22.099 Atomic orbital electron populations 1.22379 0.97547 1.01854 1.02330 1.22521 0.92951 1.01193 0.90164 0.86538 1.22695 0.99743 0.80486 0.97337 1.87868 1.76183 1.23690 1.42132 1.20822 0.98649 0.87076 0.85788 0.89851 1.19483 0.95694 0.93754 0.98115 1.21043 0.94599 0.97049 0.97269 1.21289 1.00122 0.92873 0.99433 1.21133 0.94802 0.99723 0.97140 1.21009 0.97168 0.94553 1.00401 1.20776 0.90951 0.94458 0.99362 1.98400 1.35620 1.94819 1.74293 1.22698 0.98744 0.90244 0.98244 1.62016 1.58887 1.00185 1.01615 1.21923 0.98190 0.95805 0.92956 1.19689 0.86764 0.85837 0.84636 1.90496 1.35584 1.78082 1.41940 1.41872 1.37282 1.14500 1.26476 1.19688 1.19866 0.90639 1.12546 0.87923 1.25256 0.96938 1.00098 0.95652 1.69610 1.31444 1.37159 1.16140 0.85871 0.79691 0.81499 0.77312 1.20442 1.20936 1.19406 0.92387 0.92332 0.92098 0.91947 0.88408 0.84355 0.85366 0.85186 0.84842 0.93703 0.89764 0.92957 0.89319 0.77534 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.56 8.40 37.16 0.31 -2.25 16 2 C 0.04 0.64 2.64 -67.60 -0.18 0.47 16 3 H 0.12 2.25 6.09 -51.93 -0.32 1.93 16 4 C 0.07 1.02 6.41 37.21 0.24 1.26 16 5 O -0.38 -5.14 8.76 -35.23 -0.31 -5.45 16 6 C 0.13 1.79 2.53 -27.83 -0.07 1.72 16 7 H 0.08 1.20 7.12 -51.93 -0.37 0.83 16 8 C -0.07 -0.80 5.07 -104.59 -0.53 -1.33 16 9 C -0.08 -0.83 9.35 -39.59 -0.37 -1.20 16 10 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 11 C -0.11 -0.84 10.04 -39.59 -0.40 -1.24 16 12 C -0.11 -1.00 9.83 -39.55 -0.39 -1.39 16 13 C -0.03 -0.31 6.31 -39.50 -0.25 -0.56 16 14 Cl -0.06 -0.69 27.19 -51.86 -1.41 -2.10 16 15 C 0.03 0.41 4.52 -3.71 -0.02 0.39 16 16 N -0.50 -8.49 4.37 -227.78 -1.00 -9.48 16 17 C 0.04 0.77 5.25 -4.97 -0.03 0.74 16 18 C 0.45 10.42 7.35 -10.98 -0.08 10.34 16 19 O -0.58 -15.32 14.24 5.54 0.08 -15.24 16 20 N -0.56 -14.24 5.29 -10.96 -0.06 -14.30 16 21 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 22 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.54 13.05 55.50 0.72 -23.81 16 25 Si 0.93 21.05 29.55 -169.99 -5.02 16.02 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 28 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 29 H 0.06 0.77 6.06 -51.93 -0.31 0.45 16 30 H 0.06 0.88 6.34 -51.93 -0.33 0.55 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.14 1.39 7.35 -52.48 -0.39 1.01 16 35 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 36 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 37 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 38 H 0.04 0.61 6.38 -51.93 -0.33 0.28 16 39 H 0.08 1.16 7.88 -51.93 -0.41 0.75 16 40 H 0.05 0.88 6.08 -51.93 -0.32 0.56 16 41 H 0.09 1.49 8.04 -51.93 -0.42 1.07 16 42 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 43 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 360.04 15.07 5.43 5.43 Total: -1.00 -30.67 360.04 -9.52 -40.20 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -5.56 Total: 11.07 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -2.40 Total: -2.33 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: -0.33 Total: -47.60 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.23 Total: -20.69 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.41 Total: -2.10 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.67 -9.52 -40.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111309233.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.169 kcal (2) G-P(sol) polarization free energy of solvation -30.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds