Wall clock time and date at job start Tue Mar 31 2020 20:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08989 * 109.50837 * 2 1 4 4 C 1.53104 * 109.50164 * 120.13271 * 2 1 3 5 5 O 1.43014 * 109.25299 * 176.78330 * 4 2 1 6 6 C 1.43011 * 113.74017 * 301.32182 * 5 4 2 7 7 H 1.08996 * 109.54649 * 298.72059 * 6 5 4 8 8 C 1.50707 * 109.51043 * 178.60759 * 6 5 4 9 9 C 1.38238 * 120.00366 * 335.49761 * 8 6 5 10 10 C 1.38219 * 120.01415 * 180.24944 * 9 8 6 11 11 C 1.38268 * 120.02302 * 359.75071 * 10 9 8 12 12 C 1.38195 * 120.01442 * 359.97118 * 11 10 9 13 13 C 1.38325 * 120.00626 * 155.21526 * 8 6 5 14 14 Cl 1.73599 * 120.01741 * 0.03066 * 13 8 6 15 15 C 1.53104 * 109.25775 * 58.67708 * 6 5 4 16 16 N 1.47015 * 109.50584 * 239.90781 * 2 1 3 17 17 C 1.46896 * 111.00017 * 57.67852 * 16 2 1 18 18 C 1.50697 * 109.47487 * 189.67959 * 17 16 2 19 19 O 1.21299 * 119.99642 * 359.97438 * 18 17 16 20 20 N 1.34774 * 120.00399 * 179.97438 * 18 17 16 21 21 C 1.37095 * 120.00216 * 179.97438 * 20 18 17 22 22 H 1.08004 * 119.99888 * 359.97438 * 21 20 18 23 23 C 1.38952 * 120.00171 * 180.02562 * 21 20 18 24 24 N 1.31411 * 119.99918 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00136 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46627 * 90.00135 * 25 23 21 27 27 H 1.48497 * 109.47083 * 209.99836 * 25 23 21 28 28 H 1.48496 * 109.47256 * 330.00303 * 25 23 21 29 29 H 1.09000 * 109.47575 * 180.08352 * 1 2 3 30 30 H 1.08993 * 109.47376 * 300.09258 * 1 2 3 31 31 H 1.09003 * 109.46834 * 60.09144 * 1 2 3 32 32 H 1.08997 * 109.50211 * 296.70887 * 4 2 1 33 33 H 1.08990 * 109.50793 * 56.84567 * 4 2 1 34 34 H 1.08001 * 119.99826 * 359.97438 * 9 8 6 35 35 H 1.07991 * 119.99228 * 179.71927 * 10 9 8 36 36 H 1.08003 * 119.99359 * 180.02562 * 11 10 9 37 37 H 1.08001 * 120.00765 * 180.02562 * 12 11 10 38 38 H 1.09000 * 109.50776 * 63.08291 * 15 6 5 39 39 H 1.09000 * 109.50799 * 183.17262 * 15 6 5 40 40 H 1.09001 * 109.47269 * 309.68044 * 17 16 2 41 41 H 1.09007 * 109.47140 * 69.67764 * 17 16 2 42 42 H 0.97007 * 120.00015 * 0.02562 * 20 18 17 43 43 H 0.97001 * 119.99992 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0273 0.0000 4 6 2.0411 -0.7245 1.2482 5 8 3.4692 -0.7873 1.2054 6 6 3.9817 -1.4580 0.0510 7 1 3.6307 -2.4899 0.0430 8 6 5.4883 -1.4393 0.0854 9 6 6.1513 -0.4544 0.7935 10 6 7.5331 -0.4340 0.8210 11 6 8.2529 -1.4015 0.1444 12 6 7.5911 -2.3899 -0.5591 13 6 6.2077 -2.4108 -0.5868 14 17 5.3757 -3.6517 -1.4709 15 6 3.4903 -0.7410 -1.2094 16 7 2.0209 -0.6948 -1.1990 17 6 1.5055 -0.0637 -2.4212 18 6 1.8285 -0.9321 -3.6097 19 8 2.4294 -1.9742 -3.4539 20 7 1.4497 -0.5510 -4.8457 21 6 1.7440 -1.3408 -5.9269 22 1 2.2798 -2.2683 -5.7883 23 6 1.3539 -0.9476 -7.2013 24 7 0.7033 0.1816 -7.3702 25 14 1.7555 -2.0234 -8.6746 26 1 0.6471 -2.9852 -8.9019 27 1 1.9257 -1.1708 -9.8784 28 1 3.0128 -2.7696 -8.4147 29 1 -0.3634 -1.0276 0.0015 30 1 -0.3634 0.5152 0.8891 31 1 -0.3633 0.5124 -0.8908 32 1 1.7273 -0.1803 2.1389 33 1 1.6330 -1.7347 1.2753 34 1 5.5897 0.3018 1.3218 35 1 8.0508 0.3382 1.3705 36 1 9.3326 -1.3853 0.1665 37 1 8.1534 -3.1458 -1.0871 38 1 3.8862 0.2743 -1.2283 39 1 3.8319 -1.2815 -2.0922 40 1 0.4249 0.0551 -2.3410 41 1 1.9700 0.9142 -2.5488 42 1 0.9694 0.2826 -4.9704 43 1 0.4313 0.4563 -8.2598 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111309234.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:02 Heat of formation + Delta-G solvation = -69.297915 kcal Electronic energy + Delta-G solvation = -27509.517251 eV Core-core repulsion = 23579.904463 eV Total energy + Delta-G solvation = -3929.612788 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.43161 -40.24103 -39.49369 -37.40424 -36.91822 -35.86312 -34.27395 -33.26412 -32.03848 -31.69747 -29.97643 -27.90202 -27.15041 -25.43351 -24.34097 -23.61284 -22.27115 -21.25031 -20.86912 -19.86618 -18.33189 -18.04275 -17.48233 -17.05539 -16.86540 -16.54812 -16.13821 -15.96788 -15.72945 -15.65516 -15.35832 -15.15252 -14.79431 -14.73255 -14.37214 -14.04585 -13.87390 -13.53756 -13.34145 -13.08496 -13.00148 -12.72366 -12.57325 -12.45682 -12.41734 -12.39671 -12.27513 -12.14259 -12.11364 -11.72906 -11.45696 -11.40150 -10.78460 -10.22111 -9.98671 -9.87370 -9.65354 -9.31473 -8.46021 -5.93763 0.12088 0.27490 1.19194 1.36463 1.39953 1.52470 2.05961 2.26711 2.50293 2.62235 2.71346 3.20367 3.31732 3.72105 3.76751 3.83034 3.94106 3.98801 4.13260 4.14657 4.22853 4.33460 4.38461 4.40863 4.44008 4.49685 4.56555 4.69590 4.71991 4.83040 4.87111 4.91324 4.98158 5.06278 5.26762 5.30688 5.38421 5.41516 5.44856 5.79938 5.85900 5.97491 6.06730 6.16972 6.61810 7.14345 7.57444 8.13886 8.71637 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010908 B = 0.003821 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.257320 B = 7326.772440 C = 9080.430027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.040 3.960 3 H 0.053 0.947 4 C 0.070 3.930 5 O -0.383 6.383 6 C 0.148 3.852 7 H 0.062 0.938 8 C -0.094 4.094 9 C -0.091 4.091 10 C -0.114 4.114 11 C -0.101 4.101 12 C -0.121 4.121 13 C -0.049 4.049 14 Cl -0.077 7.077 15 C 0.038 3.962 16 N -0.524 5.524 17 C 0.054 3.946 18 C 0.440 3.560 19 O -0.603 6.603 20 N -0.575 5.575 21 C -0.328 4.328 22 H 0.077 0.923 23 C -0.012 4.012 24 N -0.921 5.921 25 Si 0.989 3.011 26 H -0.271 1.271 27 H -0.270 1.270 28 H -0.275 1.275 29 H 0.058 0.942 30 H 0.093 0.907 31 H 0.060 0.940 32 H 0.135 0.865 33 H 0.055 0.945 34 H 0.143 0.857 35 H 0.163 0.837 36 H 0.166 0.834 37 H 0.147 0.853 38 H 0.029 0.971 39 H 0.082 0.918 40 H 0.118 0.882 41 H 0.060 0.940 42 H 0.395 0.605 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.741 3.028 19.339 21.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.068 4.068 3 H 0.071 0.929 4 C -0.007 4.007 5 O -0.302 6.302 6 C 0.090 3.910 7 H 0.080 0.920 8 C -0.096 4.096 9 C -0.109 4.109 10 C -0.132 4.132 11 C -0.119 4.119 12 C -0.139 4.139 13 C -0.075 4.075 14 Cl -0.048 7.048 15 C -0.091 4.091 16 N -0.249 5.249 17 C -0.077 4.077 18 C 0.227 3.773 19 O -0.489 6.489 20 N -0.213 5.213 21 C -0.458 4.458 22 H 0.095 0.905 23 C -0.211 4.211 24 N -0.563 5.563 25 Si 0.813 3.187 26 H -0.197 1.197 27 H -0.195 1.195 28 H -0.200 1.200 29 H 0.077 0.923 30 H 0.111 0.889 31 H 0.079 0.921 32 H 0.152 0.848 33 H 0.073 0.927 34 H 0.160 0.840 35 H 0.180 0.820 36 H 0.184 0.816 37 H 0.165 0.835 38 H 0.047 0.953 39 H 0.100 0.900 40 H 0.136 0.864 41 H 0.078 0.922 42 H 0.228 0.772 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.920 1.908 19.354 21.396 hybrid contribution -0.349 0.344 -1.646 1.717 sum 8.571 2.252 17.708 19.802 Atomic orbital electron populations 1.21843 0.91819 1.02921 1.03412 1.22520 0.97795 0.96309 0.90192 0.92865 1.22931 0.79325 1.00748 0.97667 1.87869 1.22032 1.78196 1.42077 1.20600 0.89821 0.95781 0.84797 0.92004 1.19505 0.93872 0.96301 0.99883 1.21169 0.95269 0.97122 0.97330 1.21660 0.93176 0.99409 0.98911 1.21568 1.01890 0.93047 0.95353 1.21330 0.90935 1.00983 1.00668 1.21083 0.93882 0.93046 0.99532 1.98422 1.78805 1.53221 1.74331 1.22685 0.87994 0.98775 0.99597 1.61806 1.08217 1.53577 1.01333 1.21825 1.02779 0.94774 0.88297 1.20707 0.83696 0.88302 0.84588 1.90490 1.45596 1.27203 1.85575 1.41902 1.51651 1.22421 1.05281 1.19617 1.35633 1.04485 0.86018 0.90467 1.25972 0.96330 0.97944 1.00892 1.69671 1.39281 1.22443 1.24870 0.84985 0.78614 0.77893 0.77204 1.19668 1.19486 1.19964 0.92319 0.88869 0.92101 0.84760 0.92698 0.83957 0.81988 0.81603 0.83539 0.95299 0.89972 0.86420 0.92179 0.77177 0.91381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.92 71.98 0.64 -2.24 16 2 C 0.04 0.99 2.59 44.93 0.12 1.11 16 3 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 4 C 0.07 1.58 6.29 72.02 0.45 2.03 16 5 O -0.38 -10.48 9.30 -148.98 -1.38 -11.86 16 6 C 0.15 4.72 2.53 29.89 0.08 4.79 16 7 H 0.06 2.23 7.13 -2.39 -0.02 2.21 16 8 C -0.09 -2.74 5.08 -19.84 -0.10 -2.84 16 9 C -0.09 -2.09 9.35 22.27 0.21 -1.89 16 10 C -0.11 -1.96 10.05 22.27 0.22 -1.74 16 11 C -0.10 -1.71 10.05 22.27 0.22 -1.48 16 12 C -0.12 -2.73 9.83 22.29 0.22 -2.51 16 13 C -0.05 -1.43 6.31 22.32 0.14 -1.29 16 14 Cl -0.08 -2.62 27.16 -2.72 -0.07 -2.69 16 15 C 0.04 1.36 4.55 86.32 0.39 1.76 16 16 N -0.52 -17.95 4.28 -874.53 -3.74 -21.69 16 17 C 0.05 1.96 5.22 85.56 0.45 2.41 16 18 C 0.44 21.44 7.49 87.66 0.66 22.10 16 19 O -0.60 -33.59 13.90 -3.09 -0.04 -33.64 16 20 N -0.57 -30.04 5.29 -306.98 -1.62 -31.66 16 21 C -0.33 -18.91 9.68 84.04 0.81 -18.10 16 22 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 23 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 24 N -0.92 -50.35 13.05 21.66 0.28 -50.07 16 25 Si 0.99 43.81 29.55 68.60 2.03 45.84 16 26 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 27 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 28 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 29 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.06 1.27 6.17 -2.39 -0.01 1.25 16 32 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.14 3.02 7.34 -2.91 -0.02 3.00 16 35 H 0.16 1.65 8.06 -2.92 -0.02 1.63 16 36 H 0.17 1.60 8.06 -2.91 -0.02 1.57 16 37 H 0.15 2.81 8.06 -2.91 -0.02 2.78 16 38 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.08 3.64 5.61 -2.39 -0.01 3.63 16 40 H 0.12 3.74 5.77 -2.39 -0.01 3.72 16 41 H 0.06 2.03 8.12 -2.38 -0.02 2.01 16 42 H 0.39 19.64 7.90 -92.70 -0.73 18.91 16 43 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -70.69 363.83 0.74 -69.96 By element: Atomic # 1 Polarization: 33.56 SS G_CDS: 0.31 Total: 33.87 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 4.98 Total: 1.95 kcal Atomic # 7 Polarization: -98.34 SS G_CDS: -5.08 Total: -103.42 kcal Atomic # 8 Polarization: -44.07 SS G_CDS: -1.43 Total: -45.50 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 17 Polarization: -2.62 SS G_CDS: -0.07 Total: -2.69 kcal Total: -70.69 0.74 -69.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111309234.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.657 kcal (2) G-P(sol) polarization free energy of solvation -70.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds