Wall clock time and date at job start Tue Mar 31 2020 20:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.54567 * 2 1 4 4 C 1.53093 * 109.51056 * 120.10790 * 2 1 3 5 5 O 1.43016 * 109.25841 * 63.08068 * 4 2 1 6 6 C 1.43023 * 113.73217 * 58.67514 * 5 4 2 7 7 H 1.09003 * 109.50723 * 61.26801 * 6 5 4 8 8 C 1.50701 * 109.53723 * 181.37253 * 6 5 4 9 9 C 1.38235 * 120.00981 * 24.80332 * 8 6 5 10 10 C 1.38220 * 120.01032 * 180.02562 * 9 8 6 11 11 C 1.38256 * 120.03199 * 0.02562 * 10 9 8 12 12 C 1.38197 * 120.01244 * 359.97438 * 11 10 9 13 13 C 1.38334 * 120.00269 * 204.53073 * 8 6 5 14 14 Cl 1.73604 * 120.01543 * 359.97438 * 13 8 6 15 15 C 1.53093 * 109.25909 * 301.32749 * 6 5 4 16 16 N 1.47011 * 109.50642 * 239.89186 * 2 1 3 17 17 C 1.46898 * 111.00122 * 62.45768 * 16 2 1 18 18 C 1.50702 * 109.47123 * 169.88514 * 17 16 2 19 19 O 1.21293 * 120.00068 * 353.56564 * 18 17 16 20 20 N 1.34776 * 120.00154 * 173.56280 * 18 17 16 21 21 C 1.37101 * 120.00449 * 180.02562 * 20 18 17 22 22 H 1.07998 * 119.99591 * 359.97438 * 21 20 18 23 23 C 1.38942 * 120.00504 * 180.02562 * 21 20 18 24 24 N 1.31405 * 120.00304 * 179.72280 * 23 21 20 25 25 Si 1.86802 * 119.99731 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47474 * 269.72420 * 25 23 21 27 27 H 1.48499 * 109.47259 * 29.72543 * 25 23 21 28 28 H 1.48505 * 109.47191 * 149.72661 * 25 23 21 29 29 H 1.08997 * 109.47281 * 181.34166 * 1 2 3 30 30 H 1.08999 * 109.47204 * 301.34339 * 1 2 3 31 31 H 1.09000 * 109.47036 * 61.34020 * 1 2 3 32 32 H 1.09004 * 109.50508 * 303.15258 * 4 2 1 33 33 H 1.08998 * 109.51384 * 183.01973 * 4 2 1 34 34 H 1.07997 * 119.99096 * 0.02562 * 9 8 6 35 35 H 1.07999 * 119.98168 * 179.97438 * 10 9 8 36 36 H 1.08002 * 119.99828 * 179.97438 * 11 10 9 37 37 H 1.08000 * 120.00606 * 180.02562 * 12 11 10 38 38 H 1.09005 * 109.50705 * 296.91572 * 15 6 5 39 39 H 1.09001 * 109.54110 * 176.80995 * 15 6 5 40 40 H 1.09002 * 109.47092 * 49.88717 * 17 16 2 41 41 H 1.09004 * 109.47034 * 289.88439 * 17 16 2 42 42 H 0.97007 * 119.99512 * 0.02562 * 20 18 17 43 43 H 0.97007 * 120.00062 * 180.27598 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0412 -0.7239 1.2483 5 8 1.6226 -2.0907 1.2057 6 6 2.0837 -2.7982 0.0514 7 1 3.1736 -2.8120 0.0442 8 6 1.5629 -4.2119 0.0854 9 6 0.4096 -4.5071 0.7879 10 6 -0.0679 -5.8039 0.8196 11 6 0.6078 -6.8065 0.1491 12 6 1.7609 -6.5127 -0.5537 13 6 2.2357 -5.2134 -0.5913 14 17 3.6799 -4.8421 -1.4803 15 6 1.5729 -2.0953 -1.2091 16 7 2.0208 -0.6951 -1.1988 17 6 1.5989 0.0016 -2.4212 18 6 2.3177 -0.5864 -3.6081 19 8 3.1881 -1.4143 -3.4408 20 7 1.9933 -0.1923 -4.8555 21 6 2.6468 -0.7276 -5.9353 22 1 3.4219 -1.4647 -5.7863 23 6 2.3127 -0.3210 -7.2212 24 7 2.9428 -0.8300 -8.2559 25 14 0.9725 0.9546 -7.4788 26 1 -0.3381 0.2726 -7.6278 27 1 0.9256 1.8667 -6.3079 28 1 1.2646 1.7387 -8.7057 29 1 -0.3634 -1.0273 0.0241 30 1 -0.3633 0.5345 0.8777 31 1 -0.3633 0.4929 -0.9018 32 1 1.6332 -0.2459 2.1390 33 1 3.1299 -0.6773 1.2760 34 1 -0.1185 -3.7244 1.3122 35 1 -0.9687 -6.0341 1.3690 36 1 0.2345 -7.8197 0.1745 37 1 2.2884 -7.2959 -1.0778 38 1 0.4835 -2.1288 -1.2284 39 1 1.9682 -2.5975 -2.0921 40 1 1.8416 1.0610 -2.3378 41 1 0.5232 -0.1155 -2.5533 42 1 1.2973 0.4701 -4.9892 43 1 2.7123 -0.5431 -9.1534 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111309238.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:07 Heat of formation + Delta-G solvation = -41.430295 kcal Electronic energy + Delta-G solvation = -27729.043410 eV Core-core repulsion = 23800.639053 eV Total energy + Delta-G solvation = -3928.404357 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.45436 -39.10703 -38.10154 -36.29608 -35.67062 -33.93103 -33.08661 -31.65334 -30.82342 -30.71694 -28.69950 -26.97948 -25.63202 -24.05581 -23.60426 -22.68032 -21.40672 -19.43811 -19.13057 -18.26644 -17.36653 -16.60453 -16.43330 -15.93581 -15.65813 -15.17526 -14.94179 -14.70474 -14.60662 -14.26209 -13.85853 -13.80820 -13.73088 -13.23624 -13.18851 -12.95234 -12.61591 -12.38316 -12.20507 -11.91960 -11.82342 -11.58481 -11.43898 -11.35754 -11.28043 -11.19614 -11.03391 -10.61282 -10.58424 -10.29422 -9.96349 -9.72706 -9.50884 -8.96057 -8.69309 -8.52563 -8.15796 -7.98196 -6.29204 -3.80214 1.04310 1.16993 2.25282 3.02940 3.07109 3.15448 3.46094 3.64723 3.75875 3.82250 4.11450 4.59147 4.74313 4.78379 4.81489 4.86111 5.01614 5.10535 5.11919 5.21995 5.25459 5.27644 5.38175 5.46904 5.54242 5.56393 5.62836 5.70084 5.77949 5.79821 5.86420 5.89657 5.95968 6.10808 6.16671 6.24410 6.30097 6.33055 6.68927 7.06359 7.10806 7.25675 7.60220 8.16735 8.62456 8.97681 9.44697 9.86025 10.84022 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.011867 B = 0.003847 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.890087 B = 7275.857807 C = 8553.733542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.039 3.961 3 H 0.093 0.907 4 C 0.074 3.926 5 O -0.380 6.380 6 C 0.136 3.864 7 H 0.086 0.914 8 C -0.071 4.071 9 C -0.084 4.084 10 C -0.123 4.123 11 C -0.109 4.109 12 C -0.113 4.113 13 C -0.028 4.028 14 Cl -0.044 7.044 15 C 0.029 3.971 16 N -0.504 5.504 17 C 0.043 3.957 18 C 0.451 3.549 19 O -0.552 6.552 20 N -0.592 5.592 21 C -0.302 4.302 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.882 5.882 25 Si 0.878 3.122 26 H -0.272 1.272 27 H -0.270 1.270 28 H -0.277 1.277 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.098 0.902 33 H 0.061 0.939 34 H 0.136 0.864 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.134 0.866 38 H 0.038 0.962 39 H 0.113 0.887 40 H 0.092 0.908 41 H 0.050 0.950 42 H 0.369 0.631 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.965 -4.094 20.236 22.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.070 4.070 3 H 0.111 0.889 4 C -0.003 4.003 5 O -0.299 6.299 6 C 0.078 3.922 7 H 0.104 0.896 8 C -0.072 4.072 9 C -0.102 4.102 10 C -0.141 4.141 11 C -0.128 4.128 12 C -0.132 4.132 13 C -0.055 4.055 14 Cl -0.015 7.015 15 C -0.098 4.098 16 N -0.228 5.228 17 C -0.089 4.089 18 C 0.236 3.764 19 O -0.433 6.433 20 N -0.232 5.232 21 C -0.431 4.431 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.522 5.522 25 Si 0.705 3.295 26 H -0.197 1.197 27 H -0.195 1.195 28 H -0.202 1.202 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.116 0.884 33 H 0.079 0.921 34 H 0.154 0.846 35 H 0.145 0.855 36 H 0.147 0.853 37 H 0.152 0.848 38 H 0.056 0.944 39 H 0.131 0.869 40 H 0.110 0.890 41 H 0.068 0.932 42 H 0.202 0.798 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.782 -4.717 20.173 21.799 hybrid contribution -1.734 1.313 -0.836 2.330 sum -8.516 -3.404 19.337 21.402 Atomic orbital electron populations 1.22395 0.97049 1.02758 1.02019 1.22472 0.93705 0.99132 0.91662 0.88944 1.22631 0.99557 0.81449 0.96697 1.87873 1.76166 1.23016 1.42819 1.20879 0.98845 0.87235 0.85225 0.89650 1.19433 0.95822 0.93674 0.98317 1.20975 0.94686 0.96921 0.97649 1.21231 1.00169 0.92927 0.99797 1.21120 0.94832 0.99678 0.97143 1.21047 0.97191 0.94682 1.00262 1.20886 0.91763 0.94340 0.98490 1.98450 1.35418 1.94536 1.73105 1.22829 0.97832 0.89426 0.99758 1.61984 1.58832 1.01514 1.00445 1.21928 0.97710 0.99040 0.90177 1.19646 0.87008 0.86466 0.83280 1.90564 1.33251 1.34700 1.84793 1.42222 1.35748 1.39329 1.05940 1.19417 1.18336 1.22444 0.82867 0.86257 1.25015 0.97913 0.97963 0.95227 1.69620 1.41045 1.42967 0.98611 0.86698 0.82468 0.81767 0.78600 1.19720 1.19538 1.20207 0.91752 0.92118 0.92445 0.88443 0.92091 0.84645 0.85542 0.85272 0.84787 0.94433 0.86910 0.88997 0.93242 0.79831 0.91673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.98 8.41 37.15 0.31 -1.67 16 2 C 0.04 0.47 2.97 -67.61 -0.20 0.27 16 3 H 0.09 1.00 8.09 -51.93 -0.42 0.58 16 4 C 0.07 0.83 6.41 37.21 0.24 1.07 16 5 O -0.38 -5.00 8.74 -35.23 -0.31 -5.30 16 6 C 0.14 2.01 2.52 -27.83 -0.07 1.94 16 7 H 0.09 1.39 7.14 -51.93 -0.37 1.02 16 8 C -0.07 -0.99 5.07 -104.59 -0.53 -1.52 16 9 C -0.08 -0.99 9.35 -39.59 -0.37 -1.36 16 10 C -0.12 -1.22 10.05 -39.58 -0.40 -1.61 16 11 C -0.11 -1.07 10.05 -39.59 -0.40 -1.47 16 12 C -0.11 -1.32 9.83 -39.54 -0.39 -1.70 16 13 C -0.03 -0.39 6.32 -39.49 -0.25 -0.64 16 14 Cl -0.04 -0.71 27.14 -51.86 -1.41 -2.11 16 15 C 0.03 0.48 4.17 -3.71 -0.02 0.47 16 16 N -0.50 -8.06 4.37 -227.78 -0.99 -9.06 16 17 C 0.04 0.72 4.81 -4.98 -0.02 0.69 16 18 C 0.45 10.17 7.35 -10.98 -0.08 10.09 16 19 O -0.55 -14.47 14.27 5.55 0.08 -14.39 16 20 N -0.59 -14.09 5.09 -10.96 -0.06 -14.14 16 21 C -0.30 -8.53 10.16 -14.93 -0.15 -8.68 16 22 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 23 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 24 N -0.88 -25.87 13.96 55.49 0.77 -25.10 16 25 Si 0.88 19.45 27.74 -169.99 -4.72 14.73 16 26 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 27 H -0.27 -5.44 6.51 56.52 0.37 -5.08 16 28 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 29 H 0.06 0.77 6.10 -51.93 -0.32 0.45 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.62 6.63 -51.93 -0.34 0.28 16 32 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.14 1.48 7.35 -52.49 -0.39 1.09 16 35 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 38 H 0.04 0.60 6.42 -51.93 -0.33 0.26 16 39 H 0.11 2.27 5.84 -51.93 -0.30 1.96 16 40 H 0.09 1.35 8.04 -51.93 -0.42 0.94 16 41 H 0.05 0.75 6.87 -51.93 -0.36 0.39 16 42 H 0.37 7.75 5.76 -40.82 -0.23 7.52 16 43 H 0.27 7.39 8.31 -40.82 -0.34 7.06 16 LS Contribution 357.52 15.07 5.39 5.39 Total: -1.00 -32.45 357.52 -9.24 -41.69 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -5.58 Total: 11.38 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -2.42 Total: -3.08 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: -0.28 Total: -48.30 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.23 Total: -19.70 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -4.72 Total: 14.73 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.41 Total: -2.11 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.45 -9.24 -41.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111309238.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.258 kcal (2) G-P(sol) polarization free energy of solvation -32.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds