Wall clock time and date at job start Tue Mar 31 2020 20:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.54567 * 2 1 4 4 C 1.53093 * 109.51056 * 120.10790 * 2 1 3 5 5 O 1.43016 * 109.25841 * 63.08068 * 4 2 1 6 6 C 1.43023 * 113.73217 * 58.67514 * 5 4 2 7 7 H 1.09003 * 109.50723 * 61.26801 * 6 5 4 8 8 C 1.50701 * 109.53723 * 181.37253 * 6 5 4 9 9 C 1.38235 * 120.00981 * 24.80332 * 8 6 5 10 10 C 1.38220 * 120.01032 * 180.02562 * 9 8 6 11 11 C 1.38256 * 120.03199 * 0.02562 * 10 9 8 12 12 C 1.38197 * 120.01244 * 359.97438 * 11 10 9 13 13 C 1.38334 * 120.00269 * 204.53073 * 8 6 5 14 14 Cl 1.73604 * 120.01543 * 359.97438 * 13 8 6 15 15 C 1.53093 * 109.25909 * 301.32749 * 6 5 4 16 16 N 1.47011 * 109.50642 * 239.89186 * 2 1 3 17 17 C 1.46898 * 111.00122 * 62.45768 * 16 2 1 18 18 C 1.50702 * 109.47123 * 169.88514 * 17 16 2 19 19 O 1.21293 * 120.00068 * 353.56564 * 18 17 16 20 20 N 1.34776 * 120.00154 * 173.56280 * 18 17 16 21 21 C 1.37101 * 120.00449 * 180.02562 * 20 18 17 22 22 H 1.07998 * 119.99591 * 359.97438 * 21 20 18 23 23 C 1.38942 * 120.00504 * 180.02562 * 21 20 18 24 24 N 1.31405 * 120.00304 * 179.72280 * 23 21 20 25 25 Si 1.86802 * 119.99731 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47474 * 269.72420 * 25 23 21 27 27 H 1.48499 * 109.47259 * 29.72543 * 25 23 21 28 28 H 1.48505 * 109.47191 * 149.72661 * 25 23 21 29 29 H 1.08997 * 109.47281 * 181.34166 * 1 2 3 30 30 H 1.08999 * 109.47204 * 301.34339 * 1 2 3 31 31 H 1.09000 * 109.47036 * 61.34020 * 1 2 3 32 32 H 1.09004 * 109.50508 * 303.15258 * 4 2 1 33 33 H 1.08998 * 109.51384 * 183.01973 * 4 2 1 34 34 H 1.07997 * 119.99096 * 0.02562 * 9 8 6 35 35 H 1.07999 * 119.98168 * 179.97438 * 10 9 8 36 36 H 1.08002 * 119.99828 * 179.97438 * 11 10 9 37 37 H 1.08000 * 120.00606 * 180.02562 * 12 11 10 38 38 H 1.09005 * 109.50705 * 296.91572 * 15 6 5 39 39 H 1.09001 * 109.54110 * 176.80995 * 15 6 5 40 40 H 1.09002 * 109.47092 * 49.88717 * 17 16 2 41 41 H 1.09004 * 109.47034 * 289.88439 * 17 16 2 42 42 H 0.97007 * 119.99512 * 0.02562 * 20 18 17 43 43 H 0.97007 * 120.00062 * 180.27598 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0412 -0.7239 1.2483 5 8 1.6226 -2.0907 1.2057 6 6 2.0837 -2.7982 0.0514 7 1 3.1736 -2.8120 0.0442 8 6 1.5629 -4.2119 0.0854 9 6 0.4096 -4.5071 0.7879 10 6 -0.0679 -5.8039 0.8196 11 6 0.6078 -6.8065 0.1491 12 6 1.7609 -6.5127 -0.5537 13 6 2.2357 -5.2134 -0.5913 14 17 3.6799 -4.8421 -1.4803 15 6 1.5729 -2.0953 -1.2091 16 7 2.0208 -0.6951 -1.1988 17 6 1.5989 0.0016 -2.4212 18 6 2.3177 -0.5864 -3.6081 19 8 3.1881 -1.4143 -3.4408 20 7 1.9933 -0.1923 -4.8555 21 6 2.6468 -0.7276 -5.9353 22 1 3.4219 -1.4647 -5.7863 23 6 2.3127 -0.3210 -7.2212 24 7 2.9428 -0.8300 -8.2559 25 14 0.9725 0.9546 -7.4788 26 1 -0.3381 0.2726 -7.6278 27 1 0.9256 1.8667 -6.3079 28 1 1.2646 1.7387 -8.7057 29 1 -0.3634 -1.0273 0.0241 30 1 -0.3633 0.5345 0.8777 31 1 -0.3633 0.4929 -0.9018 32 1 1.6332 -0.2459 2.1390 33 1 3.1299 -0.6773 1.2760 34 1 -0.1185 -3.7244 1.3122 35 1 -0.9687 -6.0341 1.3690 36 1 0.2345 -7.8197 0.1745 37 1 2.2884 -7.2959 -1.0778 38 1 0.4835 -2.1288 -1.2284 39 1 1.9682 -2.5975 -2.0921 40 1 1.8416 1.0610 -2.3378 41 1 0.5232 -0.1155 -2.5533 42 1 1.2973 0.4701 -4.9892 43 1 2.7123 -0.5431 -9.1534 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111309238.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:06 Heat of formation + Delta-G solvation = -64.632963 kcal Electronic energy + Delta-G solvation = -27730.049553 eV Core-core repulsion = 23800.639053 eV Total energy + Delta-G solvation = -3929.410500 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.56379 -40.30441 -39.61138 -37.41514 -36.88490 -35.89091 -34.11054 -33.73371 -31.78623 -31.69305 -29.99153 -27.98519 -27.14651 -25.35987 -24.95379 -23.60421 -22.38767 -21.26947 -20.43387 -20.01828 -18.33752 -17.98020 -17.49437 -17.21475 -16.89059 -16.63641 -16.30690 -15.88963 -15.66887 -15.53893 -15.15394 -15.10152 -14.79947 -14.71568 -14.40440 -14.29977 -14.10686 -13.70157 -13.50006 -13.18573 -12.97091 -12.85081 -12.60267 -12.43704 -12.41445 -12.30137 -12.24266 -12.19580 -11.98283 -11.70832 -11.47086 -11.33156 -10.78329 -10.31991 -10.21495 -9.87609 -9.65824 -9.24800 -8.40333 -6.00451 0.12063 0.27598 1.19039 1.28709 1.34300 1.43031 1.97596 2.22657 2.47324 2.61124 2.69151 3.14555 3.15830 3.71975 3.83665 3.87542 3.94551 4.01982 4.06946 4.13902 4.19420 4.31475 4.35367 4.40605 4.43065 4.51491 4.57129 4.70302 4.75311 4.79275 4.83768 4.92070 5.00265 5.01196 5.27352 5.30529 5.38926 5.45099 5.53642 5.82837 5.86111 5.96685 6.07431 6.17238 6.61060 6.90393 7.41439 7.99613 8.77564 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.011867 B = 0.003847 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.890087 B = 7275.857807 C = 8553.733542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.039 3.961 3 H 0.113 0.887 4 C 0.068 3.932 5 O -0.377 6.377 6 C 0.148 3.852 7 H 0.058 0.942 8 C -0.093 4.093 9 C -0.088 4.088 10 C -0.114 4.114 11 C -0.101 4.101 12 C -0.122 4.122 13 C -0.051 4.051 14 Cl -0.080 7.080 15 C 0.040 3.960 16 N -0.527 5.527 17 C 0.055 3.945 18 C 0.448 3.552 19 O -0.596 6.596 20 N -0.594 5.594 21 C -0.323 4.323 22 H 0.054 0.946 23 C -0.015 4.015 24 N -0.936 5.936 25 Si 0.963 3.037 26 H -0.259 1.259 27 H -0.231 1.231 28 H -0.275 1.275 29 H 0.049 0.951 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.135 0.865 33 H 0.051 0.949 34 H 0.146 0.854 35 H 0.163 0.837 36 H 0.165 0.835 37 H 0.144 0.856 38 H 0.042 0.958 39 H 0.068 0.932 40 H 0.124 0.876 41 H 0.075 0.925 42 H 0.388 0.612 43 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.969 -2.327 22.835 25.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.069 4.069 3 H 0.131 0.869 4 C -0.009 4.009 5 O -0.296 6.296 6 C 0.090 3.910 7 H 0.076 0.924 8 C -0.094 4.094 9 C -0.106 4.106 10 C -0.131 4.131 11 C -0.119 4.119 12 C -0.141 4.141 13 C -0.078 4.078 14 Cl -0.051 7.051 15 C -0.089 4.089 16 N -0.252 5.252 17 C -0.076 4.076 18 C 0.236 3.764 19 O -0.479 6.479 20 N -0.236 5.236 21 C -0.452 4.452 22 H 0.072 0.928 23 C -0.213 4.213 24 N -0.577 5.577 25 Si 0.783 3.217 26 H -0.183 1.183 27 H -0.154 1.154 28 H -0.200 1.200 29 H 0.068 0.932 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.152 0.848 33 H 0.069 0.931 34 H 0.163 0.837 35 H 0.181 0.819 36 H 0.183 0.817 37 H 0.162 0.838 38 H 0.060 0.940 39 H 0.086 0.914 40 H 0.141 0.859 41 H 0.093 0.907 42 H 0.223 0.777 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.793 -2.940 22.817 25.412 hybrid contribution -0.424 0.627 -1.529 1.706 sum -11.217 -2.313 21.288 24.174 Atomic orbital electron populations 1.22333 0.95482 1.02296 1.03413 1.22642 0.94947 0.99595 0.89717 0.86949 1.22900 0.99399 0.80641 0.97948 1.87873 1.75924 1.24019 1.41813 1.20552 0.97213 0.88127 0.85100 0.92442 1.19513 0.97148 0.93067 0.99714 1.21171 0.93866 0.98329 0.97265 1.21667 1.00802 0.91829 0.98830 1.21555 0.93443 1.01471 0.95444 1.21321 0.98146 0.93882 1.00724 1.21112 0.91326 0.95771 0.99549 1.98431 1.37670 1.94838 1.74146 1.22584 0.97646 0.89805 0.98822 1.61921 1.60113 1.01537 1.01580 1.21847 0.98027 0.99950 0.87732 1.20889 0.86076 0.85043 0.84411 1.90560 1.35221 1.36405 1.85677 1.42038 1.36254 1.40061 1.05282 1.18967 1.18359 1.22632 0.85270 0.92794 1.26074 1.00875 1.00484 0.93910 1.69808 1.43422 1.45050 0.99463 0.85392 0.78059 0.78438 0.79799 1.18324 1.15425 1.20025 0.93152 0.89490 0.92201 0.84754 0.93074 0.83651 0.81926 0.81726 0.83817 0.93954 0.91355 0.85854 0.90700 0.77691 0.91247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.13 8.41 71.98 0.61 -2.52 16 2 C 0.04 0.83 2.97 44.92 0.13 0.96 16 3 H 0.11 1.97 8.09 -2.38 -0.02 1.96 16 4 C 0.07 1.37 6.41 72.01 0.46 1.83 16 5 O -0.38 -9.48 8.74 -148.98 -1.30 -10.78 16 6 C 0.15 4.50 2.52 29.88 0.08 4.58 16 7 H 0.06 2.03 7.14 -2.39 -0.02 2.02 16 8 C -0.09 -2.62 5.07 -19.84 -0.10 -2.72 16 9 C -0.09 -1.93 9.35 22.26 0.21 -1.72 16 10 C -0.11 -1.88 10.05 22.27 0.22 -1.66 16 11 C -0.10 -1.71 10.05 22.26 0.22 -1.49 16 12 C -0.12 -2.81 9.83 22.29 0.22 -2.59 16 13 C -0.05 -1.50 6.32 22.33 0.14 -1.35 16 14 Cl -0.08 -2.80 27.14 -2.72 -0.07 -2.88 16 15 C 0.04 1.34 4.17 86.31 0.36 1.70 16 16 N -0.53 -16.46 4.37 -874.55 -3.82 -20.28 16 17 C 0.06 1.76 4.81 85.56 0.41 2.17 16 18 C 0.45 20.68 7.35 87.66 0.64 21.32 16 19 O -0.60 -33.34 14.27 -3.07 -0.04 -33.39 16 20 N -0.59 -28.50 5.09 -306.99 -1.56 -30.07 16 21 C -0.32 -19.21 10.16 84.04 0.85 -18.36 16 22 H 0.05 3.83 7.39 -2.91 -0.02 3.81 16 23 C -0.02 -0.85 5.50 84.93 0.47 -0.39 16 24 N -0.94 -57.35 13.96 21.66 0.30 -57.05 16 25 Si 0.96 39.37 27.74 68.60 1.90 41.28 16 26 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 27 H -0.23 -7.93 6.51 99.48 0.65 -7.28 16 28 H -0.28 -11.16 7.11 99.48 0.71 -10.46 16 29 H 0.05 1.05 6.10 -2.39 -0.01 1.03 16 30 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.06 1.04 6.63 -2.39 -0.02 1.02 16 32 H 0.13 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.15 2.83 7.35 -2.91 -0.02 2.80 16 35 H 0.16 1.54 8.06 -2.91 -0.02 1.51 16 36 H 0.17 1.62 8.06 -2.91 -0.02 1.59 16 37 H 0.14 2.89 8.06 -2.91 -0.02 2.86 16 38 H 0.04 1.34 6.42 -2.38 -0.02 1.33 16 39 H 0.07 2.94 5.84 -2.39 -0.01 2.92 16 40 H 0.12 3.19 8.04 -2.39 -0.02 3.17 16 41 H 0.08 2.04 6.87 -2.39 -0.02 2.03 16 42 H 0.39 15.46 5.76 -92.70 -0.53 14.92 16 43 H 0.28 15.57 8.31 -92.70 -0.77 14.80 16 Total: -1.00 -79.57 357.52 0.79 -78.78 By element: Atomic # 1 Polarization: 34.18 SS G_CDS: 0.45 Total: 34.63 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 4.93 Total: -0.24 kcal Atomic # 7 Polarization: -102.32 SS G_CDS: -5.08 Total: -107.40 kcal Atomic # 8 Polarization: -42.82 SS G_CDS: -1.35 Total: -44.17 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 1.90 Total: 41.28 kcal Atomic # 17 Polarization: -2.80 SS G_CDS: -0.07 Total: -2.88 kcal Total: -79.57 0.79 -78.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111309238.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.150 kcal (2) G-P(sol) polarization free energy of solvation -79.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds