Wall clock time and date at job start Tue Mar 31 2020 20:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.69485 * 2 1 4 4 C 1.53242 * 109.58274 * 239.65317 * 2 1 3 5 5 N 1.46378 * 109.48588 * 182.55026 * 4 2 1 6 6 C 1.34779 * 119.64858 * 245.08894 * 5 4 2 7 7 O 1.21352 * 119.99475 * 5.09943 * 6 5 4 8 8 C 1.49342 * 119.99804 * 185.10362 * 6 5 4 9 9 O 1.21376 * 120.00444 * 353.66211 * 8 6 5 10 10 N 1.34781 * 119.99771 * 173.66200 * 8 6 5 11 11 C 1.39922 * 120.00091 * 179.97438 * 10 8 6 12 12 C 1.40457 * 125.98123 * 359.97438 * 11 10 8 13 13 C 1.35219 * 107.86930 * 179.80538 * 12 11 10 14 14 N 1.34983 * 107.87439 * 0.36649 * 13 12 11 15 15 C 1.46503 * 125.97181 * 179.89662 * 14 13 12 16 16 C 1.50704 * 109.46993 * 124.71208 * 15 14 13 17 17 H 1.08001 * 119.99706 * 0.02562 * 16 15 14 18 18 C 1.37869 * 119.99764 * 179.97438 * 16 15 14 19 19 N 1.31520 * 120.00267 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00105 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46863 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.47280 * 119.99815 * 20 18 16 23 23 H 1.48497 * 109.47162 * 240.00395 * 20 18 16 24 24 N 1.31278 * 125.97985 * 180.02562 * 11 10 8 25 25 C 1.46385 * 120.70637 * 65.36300 * 5 4 2 26 26 C 1.53755 * 109.20316 * 294.63683 * 25 5 4 27 27 S 1.81737 * 109.58016 * 120.33977 * 2 1 3 28 28 H 1.09005 * 109.47215 * 180.34243 * 1 2 3 29 29 H 1.08999 * 109.47633 * 300.34937 * 1 2 3 30 30 H 1.08999 * 109.46949 * 60.34980 * 1 2 3 31 31 H 1.08991 * 109.46814 * 62.54787 * 4 2 1 32 32 H 1.08998 * 109.46699 * 302.55231 * 4 2 1 33 33 H 0.97008 * 119.99670 * 0.02562 * 10 8 6 34 34 H 1.08007 * 126.06516 * 0.02562 * 12 11 10 35 35 H 1.08001 * 126.06184 * 180.26216 * 13 12 11 36 36 H 1.08999 * 109.46721 * 4.71490 * 15 14 13 37 37 H 1.08998 * 109.47099 * 244.71482 * 15 14 13 38 38 H 0.97004 * 119.99879 * 179.97438 * 19 18 16 39 39 H 1.09002 * 109.46661 * 54.63762 * 25 5 4 40 40 H 1.08996 * 109.46680 * 174.63619 * 25 5 4 41 41 H 1.08999 * 109.69827 * 297.99297 * 26 25 5 42 42 H 1.09003 * 109.62084 * 177.62299 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8973 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2460 5 7 3.5061 -0.7814 -1.2132 6 6 4.2178 -0.1241 -2.1502 7 8 3.6507 0.5810 -2.9588 8 6 5.7040 -0.2637 -2.1934 9 8 6.2819 -0.8745 -1.3180 10 7 6.4037 0.2885 -3.2044 11 6 7.7962 0.1582 -3.2446 12 6 8.5894 -0.5171 -2.3024 13 6 9.8785 -0.4192 -2.6988 14 7 9.9068 0.2967 -3.8428 15 6 11.1047 0.6423 -4.6122 16 6 10.9429 0.1684 -6.0336 17 1 10.0381 -0.3391 -6.3338 18 6 11.9495 0.3836 -6.9508 19 7 13.0511 1.0020 -6.5852 20 14 11.7487 -0.2033 -8.7128 21 1 10.4280 -0.8645 -8.8668 22 1 11.8303 0.9587 -9.6339 23 1 12.8278 -1.1700 -9.0386 24 7 8.5902 0.6465 -4.1690 25 6 4.2039 -1.5445 -0.1771 26 6 3.9337 -0.9014 1.1931 27 16 2.1391 -0.8649 1.4778 28 1 -0.3634 -1.0277 0.0061 29 1 -0.3634 0.5192 0.8868 30 1 -0.3633 0.5084 -0.8931 31 1 1.7190 -0.1956 -2.1390 32 1 1.6444 -1.7435 -1.2636 33 1 5.9418 0.7769 -3.9038 34 1 8.2326 -1.0274 -1.4198 35 1 10.7338 -0.8379 -2.1894 36 1 11.9747 0.1611 -4.1655 37 1 11.2429 1.7235 -4.6032 38 1 13.7595 1.1531 -7.2305 39 1 3.8412 -2.5724 -0.1767 40 1 5.2749 -1.5372 -0.3798 41 1 4.3263 0.1153 1.2056 42 1 4.4157 -1.4889 1.9746 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124612183.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:53 Heat of formation + Delta-G solvation = 44.250467 kcal Electronic energy + Delta-G solvation = -26406.865060 eV Core-core repulsion = 22516.512558 eV Total energy + Delta-G solvation = -3890.352503 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.51916 -40.47608 -38.86535 -37.28943 -35.20153 -33.98048 -33.43510 -31.14748 -30.92353 -29.52955 -28.00314 -26.86996 -25.09998 -23.61405 -22.87285 -22.29069 -21.33863 -20.18656 -19.82183 -17.97875 -17.45568 -16.90927 -16.69518 -16.59619 -16.11759 -15.92967 -15.27942 -15.15867 -15.04324 -14.87283 -14.45670 -14.32639 -14.05297 -13.58631 -13.38301 -12.97141 -12.73426 -12.58241 -12.49172 -12.42225 -12.36442 -11.95380 -11.82746 -11.70806 -11.15716 -11.08148 -10.91013 -10.67409 -10.33434 -10.25115 -10.05796 -9.59979 -9.42870 -9.18864 -8.70113 -8.34973 -8.03159 -7.69993 -6.30906 -4.36304 0.95461 1.29833 1.82097 2.12402 2.51519 2.84261 2.91880 3.18865 3.26812 3.32940 3.51864 3.58229 4.05429 4.15551 4.27614 4.39696 4.56519 4.65642 4.72970 4.98618 5.01487 5.04597 5.20657 5.22825 5.27328 5.40192 5.41460 5.50348 5.62780 5.69728 5.82947 6.03157 6.26819 6.40739 6.60334 6.72690 6.94604 7.09445 7.16949 7.42296 7.62142 7.74510 7.81218 7.88693 8.43383 8.72111 9.29986 10.77942 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.028323 B = 0.002140 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.358004 B =13079.714485 C =13736.488305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.067 4.067 3 H 0.092 0.908 4 C 0.108 3.892 5 N -0.584 5.584 6 C 0.516 3.484 7 O -0.511 6.511 8 C 0.519 3.481 9 O -0.486 6.486 10 N -0.590 5.590 11 C 0.245 3.755 12 C -0.284 4.284 13 C 0.055 3.945 14 N -0.312 5.312 15 C 0.256 3.744 16 C -0.530 4.530 17 H 0.070 0.930 18 C 0.062 3.938 19 N -0.894 5.894 20 Si 0.908 3.092 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.281 1.281 24 N -0.291 5.291 25 C 0.031 3.969 26 C -0.091 4.091 27 S -0.268 6.268 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.089 0.911 33 H 0.425 0.575 34 H 0.162 0.838 35 H 0.172 0.828 36 H 0.059 0.941 37 H 0.047 0.953 38 H 0.267 0.733 39 H 0.081 0.919 40 H 0.184 0.816 41 H 0.086 0.914 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.400 -4.448 15.185 25.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.197 4.197 3 H 0.110 0.890 4 C -0.016 4.016 5 N -0.318 5.318 6 C 0.298 3.702 7 O -0.386 6.386 8 C 0.300 3.700 9 O -0.362 6.362 10 N -0.236 5.236 11 C -0.007 4.007 12 C -0.315 4.315 13 C -0.095 4.095 14 N -0.094 5.094 15 C 0.139 3.861 16 C -0.569 4.569 17 H 0.088 0.912 18 C -0.141 4.141 19 N -0.532 5.532 20 Si 0.735 3.265 21 H -0.195 1.195 22 H -0.206 1.206 23 H -0.207 1.207 24 N -0.122 5.122 25 C -0.091 4.091 26 C -0.240 4.240 27 S -0.041 6.041 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.125 0.875 32 H 0.107 0.893 33 H 0.263 0.737 34 H 0.179 0.821 35 H 0.189 0.811 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.099 0.901 40 H 0.199 0.801 41 H 0.104 0.896 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -20.530 -4.119 15.015 25.767 hybrid contribution 0.383 0.027 -1.401 1.453 sum -20.147 -4.091 13.615 24.658 Atomic orbital electron populations 1.21563 0.90790 1.03398 1.03207 1.23542 1.00123 1.01624 0.94427 0.88952 1.21925 0.78821 1.02191 0.98633 1.47780 1.06531 1.49162 1.28280 1.19843 0.87684 0.80703 0.81948 1.90791 1.71370 1.37139 1.39287 1.19912 0.88012 0.79934 0.82125 1.90085 1.69327 1.40451 1.36377 1.41991 1.04028 1.51853 1.25757 1.19003 0.83019 1.01974 0.96710 1.21499 0.91012 1.13601 1.05429 1.22604 0.98935 0.97852 0.90146 1.49208 1.05267 1.37430 1.17500 1.19835 0.76903 0.98021 0.91353 1.21274 1.03613 1.38793 0.93194 0.91197 1.24948 0.94744 0.94761 0.99609 1.69924 1.06558 1.41136 1.35595 0.86263 0.78347 0.78549 0.83306 1.19536 1.20639 1.20717 1.77426 0.88636 1.25089 1.21090 1.23881 1.06362 0.94312 0.84534 1.23946 0.93450 1.05343 1.01243 1.86936 1.07738 1.77409 1.32060 0.91285 0.91233 0.90661 0.87485 0.89260 0.73724 0.82054 0.81119 0.92283 0.93470 0.92296 0.90078 0.80106 0.89570 0.86356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.74 9.22 37.16 0.34 -0.40 16 2 C -0.07 -0.52 3.32 -26.61 -0.09 -0.61 16 3 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 4 C 0.11 0.88 5.50 -3.98 -0.02 0.86 16 5 N -0.58 -5.70 2.78 -173.82 -0.48 -6.18 16 6 C 0.52 6.17 7.71 -11.63 -0.09 6.08 16 7 O -0.51 -6.99 15.81 5.49 0.09 -6.90 16 8 C 0.52 6.89 7.77 -11.63 -0.09 6.80 16 9 O -0.49 -6.51 10.07 5.47 0.06 -6.46 16 10 N -0.59 -8.92 5.43 -11.58 -0.06 -8.98 16 11 C 0.25 4.58 8.10 -154.56 -1.25 3.32 16 12 C -0.28 -4.98 9.60 -39.82 -0.38 -5.36 16 13 C 0.05 0.99 11.43 -17.24 -0.20 0.80 16 14 N -0.31 -6.84 3.67 -62.56 -0.23 -7.07 16 15 C 0.26 6.23 6.26 -5.19 -0.03 6.20 16 16 C -0.53 -14.33 9.24 -34.44 -0.32 -14.65 16 17 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -24.73 13.29 55.43 0.74 -24.00 16 20 Si 0.91 20.98 29.54 -169.99 -5.02 15.96 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 24 N -0.29 -6.39 12.42 31.41 0.39 -6.00 16 25 C 0.03 0.27 6.12 -3.71 -0.02 0.25 16 26 C -0.09 -0.74 6.68 37.55 0.25 -0.48 16 27 S -0.27 -2.34 21.66 -107.50 -2.33 -4.67 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.11 0.91 6.91 -51.93 -0.36 0.55 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.42 5.94 8.31 -40.82 -0.34 5.60 16 34 H 0.16 2.55 5.91 -52.48 -0.31 2.24 16 35 H 0.17 2.45 8.06 -52.49 -0.42 2.03 16 36 H 0.06 1.40 8.07 -51.93 -0.42 0.98 16 37 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.18 1.82 3.49 -58.00 -0.20 1.62 16 41 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 362.55 15.07 5.46 5.46 Total: -1.00 -30.18 362.55 -8.79 -38.97 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -5.40 Total: 5.47 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -2.00 Total: 4.39 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: 0.35 Total: -52.23 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: 0.14 Total: -13.36 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: -2.34 SS G_CDS: -2.33 Total: -4.67 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.18 -8.79 -38.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124612183.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.221 kcal (2) G-P(sol) polarization free energy of solvation -30.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds