Wall clock time and date at job start Tue Mar 31 2020 21:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47220 * 2 1 4 4 O 1.42901 * 109.47036 * 240.00387 * 2 1 3 5 5 C 1.35924 * 117.00254 * 86.38740 * 4 2 1 6 6 C 1.38713 * 120.05766 * 354.77336 * 5 4 2 7 7 C 1.38149 * 119.95138 * 180.02562 * 6 5 4 8 8 C 1.38271 * 120.07967 * 359.72952 * 7 6 5 9 9 C 1.38243 * 120.12112 * 0.54831 * 8 7 6 10 10 C 1.38253 * 120.03991 * 359.45400 * 9 8 7 11 11 Cl 1.73601 * 120.03907 * 180.29829 * 10 9 8 12 12 C 1.50700 * 109.46945 * 120.00336 * 2 1 3 13 13 O 1.21279 * 119.99887 * 111.84159 * 12 2 1 14 14 N 1.34777 * 119.99646 * 291.83949 * 12 2 1 15 15 C 1.46972 * 120.58949 * 184.78883 * 14 12 2 16 16 C 1.53813 * 108.39802 * 124.75568 * 15 14 12 17 17 N 1.46964 * 108.57425 * 49.63746 * 16 15 14 18 18 C 1.36940 * 120.59445 * 124.67138 * 17 16 15 19 19 H 1.07997 * 120.00052 * 205.41498 * 18 17 16 20 20 C 1.38813 * 119.99718 * 25.41032 * 18 17 16 21 21 N 1.31621 * 120.00393 * 21.63992 * 20 18 17 22 22 Si 1.86802 * 119.99940 * 201.64197 * 20 18 17 23 23 H 1.48505 * 109.46916 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47159 * 119.99830 * 22 20 18 25 25 H 1.48502 * 109.47339 * 240.00148 * 22 20 18 26 26 C 1.46961 * 118.81610 * 304.64021 * 17 16 15 27 27 C 1.46959 * 120.59675 * 5.06758 * 14 12 2 28 28 H 1.09000 * 109.47221 * 182.84169 * 1 2 3 29 29 H 1.08998 * 109.47456 * 302.84953 * 1 2 3 30 30 H 1.09007 * 109.47275 * 62.84529 * 1 2 3 31 31 H 1.07998 * 120.01893 * 0.02562 * 6 5 4 32 32 H 1.08001 * 119.95647 * 179.97438 * 7 6 5 33 33 H 1.08009 * 119.94214 * 180.27754 * 8 7 6 34 34 H 1.07997 * 119.97909 * 179.72161 * 9 8 7 35 35 H 1.08998 * 109.60866 * 244.53908 * 15 14 12 36 36 H 1.09000 * 109.60736 * 5.05239 * 15 14 12 37 37 H 1.08995 * 109.74059 * 289.84935 * 16 15 14 38 38 H 1.08999 * 109.53031 * 169.30335 * 16 15 14 39 39 H 0.96997 * 120.00128 * 179.97438 * 21 20 18 40 40 H 1.08999 * 109.61439 * 295.49184 * 26 17 16 41 41 H 1.08995 * 109.75270 * 175.05583 * 26 17 16 42 42 H 1.08999 * 109.61277 * 354.94669 * 27 14 12 43 43 H 1.08995 * 109.61023 * 115.46292 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.1401 0.0696 -2.2970 6 6 1.7182 1.3909 -2.3137 7 6 1.8547 2.1441 -3.4637 8 6 2.4164 1.5840 -4.5963 9 6 2.8327 0.2658 -4.5850 10 6 2.6984 -0.4925 -3.4368 11 17 3.2282 -2.1456 -3.4203 12 6 2.0323 -0.7105 1.2304 13 8 2.6028 -1.7755 1.1252 14 7 1.8475 -0.1622 2.4477 15 6 2.4224 -0.7900 3.6458 16 6 3.2866 0.2537 4.3735 17 7 2.5015 1.4865 4.5273 18 6 2.3138 2.0435 5.7641 19 1 1.4505 2.6649 5.9511 20 6 3.2330 1.8094 6.7775 21 7 4.4598 1.4364 6.4801 22 14 2.7291 2.0235 8.5635 23 1 1.3067 2.4450 8.6293 24 1 2.8969 0.7354 9.2830 25 1 3.5829 3.0598 9.1979 26 6 1.9220 2.1112 3.3299 27 6 1.0624 1.0705 2.6015 28 1 -0.3634 -1.0264 0.0509 29 1 -0.3634 0.5574 0.8633 30 1 -0.3634 0.4690 -0.9144 31 1 1.2834 1.8305 -1.4282 32 1 1.5259 3.1727 -3.4769 33 1 2.5262 2.1762 -5.4929 34 1 3.2669 -0.1706 -5.4723 35 1 1.6205 -1.1271 4.3027 36 1 3.0402 -1.6390 3.3532 37 1 4.1830 0.4613 3.7893 38 1 3.5671 -0.1264 5.3558 39 1 5.1022 1.2732 7.1882 40 1 2.7213 2.4511 2.6713 41 1 1.3019 2.9592 3.6204 42 1 0.7820 1.4506 1.6192 43 1 0.1660 0.8629 3.1858 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130104234.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:55 Heat of formation + Delta-G solvation = -8.506909 kcal Electronic energy + Delta-G solvation = -27332.070233 eV Core-core repulsion = 23405.093541 eV Total energy + Delta-G solvation = -3926.976692 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.86011 -39.55098 -37.74037 -36.72525 -36.43827 -34.17883 -32.46653 -31.27152 -31.04309 -30.22496 -29.65065 -27.14897 -25.01744 -23.70452 -23.20500 -22.86763 -22.25360 -20.47018 -18.92253 -18.75728 -17.20914 -16.72580 -16.39160 -15.99796 -15.85890 -15.27596 -14.93191 -14.76892 -14.61422 -14.21595 -13.96745 -13.77965 -13.59249 -13.52001 -13.26755 -13.09844 -12.51620 -12.42283 -12.28575 -12.08146 -11.67561 -11.61921 -11.36576 -11.32178 -11.19800 -10.87960 -10.86491 -10.82013 -10.60506 -10.33755 -9.99805 -9.91358 -9.42276 -9.15091 -8.66613 -8.42278 -8.33685 -6.83483 -5.91886 -3.32732 0.85887 1.03929 2.06639 2.53900 2.79416 3.30771 3.34794 3.39555 3.41107 3.53422 4.34470 4.40849 4.43675 4.60302 4.61777 4.75576 4.83445 4.96147 5.07096 5.14193 5.24609 5.34002 5.37014 5.41988 5.58206 5.63360 5.73110 5.79738 5.89956 5.90139 6.02963 6.10985 6.22645 6.27498 6.33244 6.38426 6.57269 6.72964 7.04499 7.16573 7.45563 7.67110 7.73885 8.26976 8.40537 9.04214 9.68500 10.23355 11.15897 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.021678 B = 0.002666 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.326235 B =10501.063283 C =10981.798355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.066 3.934 3 H 0.099 0.901 4 O -0.271 6.271 5 C 0.144 3.856 6 C -0.203 4.203 7 C -0.073 4.073 8 C -0.151 4.151 9 C -0.074 4.074 10 C -0.070 4.070 11 Cl -0.053 7.053 12 C 0.514 3.486 13 O -0.528 6.528 14 N -0.592 5.592 15 C 0.090 3.910 16 C 0.157 3.843 17 N -0.590 5.590 18 C -0.260 4.260 19 H 0.070 0.930 20 C 0.004 3.996 21 N -0.897 5.897 22 Si 0.901 3.099 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.290 1.290 26 C 0.130 3.870 27 C 0.079 3.921 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.139 0.861 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.138 0.862 35 H 0.063 0.937 36 H 0.082 0.918 37 H 0.024 0.976 38 H 0.102 0.898 39 H 0.256 0.744 40 H 0.023 0.977 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.953 0.838 -20.496 22.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.006 3.994 3 H 0.116 0.884 4 O -0.183 6.183 5 C 0.097 3.903 6 C -0.221 4.221 7 C -0.092 4.092 8 C -0.169 4.169 9 C -0.092 4.092 10 C -0.098 4.098 11 Cl -0.024 7.024 12 C 0.300 3.700 13 O -0.404 6.404 14 N -0.326 5.326 15 C -0.033 4.033 16 C 0.031 3.969 17 N -0.313 5.313 18 C -0.389 4.389 19 H 0.088 0.912 20 C -0.195 4.195 21 N -0.540 5.540 22 Si 0.731 3.269 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.217 1.217 26 C 0.002 3.998 27 C -0.045 4.045 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.092 0.908 31 H 0.157 0.843 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.156 0.844 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.042 0.958 38 H 0.120 0.880 39 H 0.066 0.934 40 H 0.041 0.959 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.415 -0.120 -20.356 21.665 hybrid contribution -0.179 0.291 1.022 1.077 sum -7.593 0.171 -19.335 20.773 Atomic orbital electron populations 1.22520 0.92567 1.04741 1.04128 1.22295 0.95854 0.97147 0.84092 0.88376 1.86308 1.80343 1.35786 1.15871 1.18803 0.94662 0.90351 0.86521 1.21330 1.06852 0.93177 1.00771 1.21057 0.96325 0.99767 0.92016 1.21020 1.01936 0.94747 0.99216 1.20931 0.98414 0.93789 0.96103 1.20237 1.06867 0.88454 0.94191 1.98386 1.88785 1.16588 1.98688 1.19872 0.80442 0.85824 0.83903 1.90709 1.42413 1.21455 1.85819 1.47952 1.52283 1.26215 1.06125 1.22654 0.98281 0.97753 0.84650 1.21310 0.90726 0.84742 1.00166 1.44039 1.60824 1.24436 1.02012 1.19215 1.04215 1.28930 0.86527 0.91239 1.25000 0.94395 1.01214 0.98924 1.70075 1.02136 1.50175 1.31649 0.86252 0.78102 0.77459 0.85104 1.20193 1.21409 1.21705 1.21279 0.95270 0.93443 0.89786 1.22655 0.95381 0.85979 1.00497 0.90598 0.89166 0.90800 0.84303 0.85029 0.85004 0.84397 0.91820 0.89972 0.95751 0.88027 0.93426 0.95917 0.91298 0.90684 0.90979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.87 8.76 37.16 0.33 -1.54 16 2 C 0.07 0.89 1.80 -27.88 -0.05 0.84 16 3 H 0.10 1.15 5.59 -51.93 -0.29 0.86 16 4 O -0.27 -4.11 8.80 -39.28 -0.35 -4.45 16 5 C 0.14 1.84 6.60 -39.19 -0.26 1.58 16 6 C -0.20 -2.02 8.30 -39.44 -0.33 -2.35 16 7 C -0.07 -0.60 10.04 -39.60 -0.40 -0.99 16 8 C -0.15 -1.18 10.04 -39.57 -0.40 -1.58 16 9 C -0.07 -0.69 9.83 -39.57 -0.39 -1.08 16 10 C -0.07 -0.86 6.33 -39.36 -0.25 -1.11 16 11 Cl -0.05 -0.70 28.50 -51.86 -1.48 -2.18 16 12 C 0.51 9.04 7.09 -10.99 -0.08 8.96 16 13 O -0.53 -11.35 15.94 -14.22 -0.23 -11.58 16 14 N -0.59 -10.29 2.94 -172.21 -0.51 -10.80 16 15 C 0.09 1.76 6.61 -3.36 -0.02 1.73 16 16 C 0.16 3.63 5.58 -3.37 -0.02 3.61 16 17 N -0.59 -13.82 2.98 -171.77 -0.51 -14.33 16 18 C -0.26 -6.69 9.58 -15.06 -0.14 -6.83 16 19 H 0.07 1.74 7.91 -52.49 -0.42 1.32 16 20 C 0.00 0.10 4.82 -17.43 -0.08 0.02 16 21 N -0.90 -25.16 11.27 55.49 0.63 -24.53 16 22 Si 0.90 20.77 29.61 -169.99 -5.03 15.74 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 C 0.13 2.39 6.67 -3.59 -0.02 2.37 16 27 C 0.08 1.17 5.42 -3.60 -0.02 1.15 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.09 0.80 5.39 -51.93 -0.28 0.52 16 30 H 0.07 0.62 7.14 -51.92 -0.37 0.25 16 31 H 0.14 1.16 5.53 -52.49 -0.29 0.87 16 32 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 33 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 34 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.08 1.64 7.02 -51.93 -0.36 1.28 16 37 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.10 2.61 5.91 -51.93 -0.31 2.30 16 39 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 1.18 7.93 -51.93 -0.41 0.77 16 42 H 0.08 0.82 4.35 -51.93 -0.23 0.60 16 43 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 358.80 15.07 5.41 5.41 Total: -1.00 -32.22 358.80 -9.68 -41.89 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -5.47 Total: 0.05 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -2.13 Total: 4.79 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: -0.39 Total: -49.66 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.57 Total: -16.03 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.03 Total: 15.74 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.48 Total: -2.18 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.22 -9.68 -41.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130104234.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.384 kcal (2) G-P(sol) polarization free energy of solvation -32.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds