Wall clock time and date at job start Tue Mar 31 2020 21:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46852 * 2 1 4 4 O 1.42900 * 109.46823 * 119.99978 * 2 1 3 5 5 C 1.35924 * 116.99841 * 275.66898 * 4 2 1 6 6 C 1.38704 * 120.06018 * 4.14113 * 5 4 2 7 7 C 1.38154 * 119.95478 * 180.25182 * 6 5 4 8 8 C 1.38271 * 120.08057 * 0.02562 * 7 6 5 9 9 C 1.38255 * 120.11923 * 0.02562 * 8 7 6 10 10 C 1.38252 * 120.03785 * 359.97438 * 9 8 7 11 11 Cl 1.73599 * 120.03780 * 180.02562 * 10 9 8 12 12 C 1.50695 * 109.47165 * 239.99989 * 2 1 3 13 13 O 1.21282 * 120.00182 * 244.99709 * 12 2 1 14 14 N 1.34778 * 120.00164 * 65.00012 * 12 2 1 15 15 C 1.46970 * 120.59339 * 359.71771 * 14 12 2 16 16 C 1.53813 * 108.39898 * 124.75518 * 15 14 12 17 17 N 1.46968 * 108.57794 * 49.63970 * 16 15 14 18 18 C 1.36938 * 120.59341 * 124.62082 * 17 16 15 19 19 H 1.08001 * 119.99647 * 213.72698 * 18 17 16 20 20 C 1.38813 * 119.99913 * 33.72881 * 18 17 16 21 21 N 1.31614 * 119.99915 * 17.18253 * 20 18 17 22 22 Si 1.86798 * 119.99883 * 197.17946 * 20 18 17 23 23 H 1.48499 * 109.47342 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47122 * 120.00301 * 22 20 18 25 25 H 1.48506 * 109.46998 * 239.99974 * 22 20 18 26 26 C 1.46963 * 118.81192 * 304.64661 * 17 16 15 27 27 C 1.46962 * 120.59558 * 180.02562 * 14 12 2 28 28 H 1.09006 * 109.47372 * 60.00400 * 1 2 3 29 29 H 1.09000 * 109.47198 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47504 * 300.00149 * 1 2 3 31 31 H 1.07995 * 120.02392 * 0.25023 * 6 5 4 32 32 H 1.08008 * 119.95977 * 180.02562 * 7 6 5 33 33 H 1.08000 * 119.94509 * 180.02562 * 8 7 6 34 34 H 1.07998 * 119.97821 * 180.02562 * 9 8 7 35 35 H 1.09000 * 109.61174 * 244.53988 * 15 14 12 36 36 H 1.09004 * 109.60762 * 5.05463 * 15 14 12 37 37 H 1.09000 * 109.74399 * 289.85611 * 16 15 14 38 38 H 1.08998 * 109.53401 * 169.30011 * 16 15 14 39 39 H 0.97000 * 119.99981 * 180.02562 * 21 20 18 40 40 H 1.08997 * 109.61347 * 295.47901 * 26 17 16 41 41 H 1.08996 * 109.61151 * 174.96664 * 26 17 16 42 42 H 1.08992 * 109.61164 * 354.94154 * 27 14 12 43 43 H 1.08997 * 109.61196 * 115.46281 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0991 0.0593 2.3077 6 6 1.6591 1.3745 2.3264 7 6 1.7593 2.1191 3.4858 8 6 2.2982 1.5549 4.6274 9 6 2.7388 0.2445 4.6121 10 6 2.6408 -0.5051 3.4545 11 17 3.1935 -2.1507 3.4355 12 6 2.0323 -0.7104 -1.2304 13 8 2.6530 -1.7466 -1.1215 14 7 1.7919 -0.1942 -2.4520 15 6 1.0359 1.0575 -2.5995 16 6 1.8885 2.0467 -3.4121 17 7 2.3724 1.3649 -4.6208 18 6 2.1273 1.8889 -5.8620 19 1 1.9669 1.2314 -6.7036 20 6 2.0849 3.2651 -6.0383 21 7 2.6013 4.0616 -5.1266 22 14 1.2952 3.9867 -7.5697 23 1 0.7930 2.8874 -8.4325 24 1 0.1630 4.8634 -7.1765 25 1 2.3015 4.7830 -8.3172 26 6 3.1235 0.1103 -4.4736 27 6 2.2752 -0.8763 -3.6606 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.2384 1.8163 1.4352 32 1 1.4162 3.1431 3.5006 33 1 2.3751 2.1388 5.5326 34 1 3.1589 -0.1940 5.5051 35 1 0.1006 0.8604 -3.1234 36 1 0.8257 1.4761 -1.6153 37 1 2.7377 2.3783 -2.8145 38 1 1.2798 2.9053 -3.6955 39 1 2.5714 5.0233 -5.2496 40 1 4.0605 0.3040 -3.9516 41 1 3.3303 -0.3099 -5.4578 42 1 2.8837 -1.7351 -3.3775 43 1 1.4259 -1.2076 -4.2581 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130104398.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:57 Heat of formation + Delta-G solvation = -29.564467 kcal Electronic energy + Delta-G solvation = -27373.630132 eV Core-core repulsion = 23445.740316 eV Total energy + Delta-G solvation = -3927.889816 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.91536 -40.72090 -38.79642 -38.16476 -37.32549 -35.76288 -33.95193 -32.68928 -31.85474 -31.57172 -30.60116 -28.77828 -26.29298 -25.07803 -24.60264 -23.82044 -23.27788 -21.91319 -20.36405 -19.65773 -18.78253 -17.75170 -17.65753 -17.12383 -16.95812 -16.68378 -16.34308 -15.95175 -15.60445 -15.47381 -15.35144 -15.17695 -15.00864 -14.85019 -14.39091 -14.12683 -13.81994 -13.50816 -13.32159 -13.29534 -12.86786 -12.81941 -12.67309 -12.51566 -12.50400 -12.24783 -12.19106 -12.07155 -12.04746 -11.87986 -11.75283 -11.62736 -10.81845 -10.60039 -9.90674 -9.89424 -9.23652 -8.61636 -7.90259 -5.43133 0.14093 0.30042 1.19171 1.40666 1.47446 1.48615 1.52168 1.61515 2.35710 2.51673 2.64162 3.22012 3.25645 3.53564 3.61520 3.78280 3.80919 3.93564 4.15953 4.18649 4.20595 4.30600 4.34617 4.42957 4.49207 4.56705 4.60183 4.66533 4.69046 4.77348 4.78525 5.03007 5.07924 5.11692 5.17603 5.27332 5.44779 5.46456 5.53063 5.66167 5.68693 6.15951 6.35679 6.37901 7.01206 7.11267 7.75934 8.33362 9.14771 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018792 B = 0.002834 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.635910 B = 9877.582402 C =10801.315236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.070 3.930 3 H 0.114 0.886 4 O -0.301 6.301 5 C 0.114 3.886 6 C -0.207 4.207 7 C -0.070 4.070 8 C -0.141 4.141 9 C -0.076 4.076 10 C -0.093 4.093 11 Cl -0.076 7.076 12 C 0.512 3.488 13 O -0.573 6.573 14 N -0.593 5.593 15 C 0.087 3.913 16 C 0.165 3.835 17 N -0.606 5.606 18 C -0.270 4.270 19 H 0.065 0.935 20 C -0.037 4.037 21 N -0.928 5.928 22 Si 0.966 3.034 23 H -0.268 1.268 24 H -0.285 1.285 25 H -0.296 1.296 26 C 0.132 3.868 27 C 0.107 3.893 28 H 0.103 0.897 29 H 0.066 0.934 30 H 0.097 0.903 31 H 0.152 0.848 32 H 0.163 0.837 33 H 0.166 0.834 34 H 0.156 0.844 35 H 0.084 0.916 36 H 0.111 0.889 37 H 0.002 0.998 38 H 0.070 0.930 39 H 0.253 0.747 40 H 0.005 0.995 41 H 0.073 0.927 42 H 0.082 0.918 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.375 -2.793 19.348 20.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.011 3.989 3 H 0.131 0.869 4 O -0.213 6.213 5 C 0.068 3.932 6 C -0.225 4.225 7 C -0.088 4.088 8 C -0.159 4.159 9 C -0.095 4.095 10 C -0.120 4.120 11 Cl -0.047 7.047 12 C 0.300 3.700 13 O -0.452 6.452 14 N -0.326 5.326 15 C -0.037 4.037 16 C 0.039 3.961 17 N -0.330 5.330 18 C -0.400 4.400 19 H 0.083 0.917 20 C -0.234 4.234 21 N -0.572 5.572 22 Si 0.794 3.206 23 H -0.192 1.192 24 H -0.211 1.211 25 H -0.223 1.223 26 C 0.006 3.994 27 C -0.017 4.017 28 H 0.121 0.879 29 H 0.085 0.915 30 H 0.116 0.884 31 H 0.170 0.830 32 H 0.181 0.819 33 H 0.183 0.817 34 H 0.174 0.826 35 H 0.102 0.898 36 H 0.129 0.871 37 H 0.020 0.980 38 H 0.088 0.912 39 H 0.062 0.938 40 H 0.023 0.977 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.942 -3.531 19.330 20.528 hybrid contribution 0.215 0.367 -1.170 1.245 sum -5.727 -3.164 18.160 19.302 Atomic orbital electron populations 1.22514 0.90043 1.04647 1.06019 1.22273 0.97561 0.96807 0.82248 0.86888 1.86242 1.81202 1.37912 1.15991 1.19082 0.96714 0.91616 0.85767 1.21586 1.06496 0.92338 1.02099 1.21503 0.95204 1.00922 0.91153 1.21467 0.99989 0.94211 1.00263 1.21247 0.98076 0.94442 0.95705 1.20557 1.08307 0.88085 0.95076 1.98364 1.88429 1.19154 1.98795 1.20556 0.79553 0.85043 0.84866 1.90674 1.42409 1.25512 1.86606 1.47981 1.54446 1.25150 1.04975 1.22890 0.95176 0.83533 1.02052 1.21052 0.94936 0.93725 0.86415 1.44193 1.61781 1.24213 1.02797 1.19446 1.42943 0.89965 0.87668 0.91740 1.25886 0.99765 0.97341 1.00375 1.70166 1.46485 1.03085 1.37511 0.85250 0.77687 0.78147 0.79527 1.19239 1.21082 1.22322 1.21365 0.92330 0.87431 0.98266 1.22072 0.99145 0.95377 0.85077 0.87893 0.91538 0.88440 0.83008 0.81928 0.81675 0.82591 0.89820 0.87079 0.98019 0.91164 0.93805 0.97671 0.90867 0.89936 0.90346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.40 8.73 71.98 0.63 -2.78 16 2 C 0.07 1.87 1.81 29.85 0.05 1.93 16 3 H 0.11 2.64 5.62 -2.39 -0.01 2.62 16 4 O -0.30 -9.19 8.80 -73.70 -0.65 -9.84 16 5 C 0.11 2.89 6.59 22.52 0.15 3.04 16 6 C -0.21 -3.86 8.23 22.36 0.18 -3.68 16 7 C -0.07 -0.96 10.04 22.26 0.22 -0.73 16 8 C -0.14 -1.81 10.04 22.28 0.22 -1.59 16 9 C -0.08 -1.30 9.83 22.28 0.22 -1.08 16 10 C -0.09 -2.25 6.33 22.41 0.14 -2.11 16 11 Cl -0.08 -2.05 28.50 -2.72 -0.08 -2.13 16 12 C 0.51 17.78 7.12 87.66 0.62 18.40 16 13 O -0.57 -24.52 15.91 15.95 0.25 -24.27 16 14 N -0.59 -20.01 2.94 -817.05 -2.40 -22.41 16 15 C 0.09 2.66 5.22 86.56 0.45 3.12 16 16 C 0.17 7.00 5.50 86.56 0.48 7.48 16 17 N -0.61 -28.57 2.93 -697.24 -2.04 -30.61 16 18 C -0.27 -13.93 9.51 84.03 0.80 -13.13 16 19 H 0.06 3.28 7.89 -2.91 -0.02 3.25 16 20 C -0.04 -1.92 4.86 84.86 0.41 -1.50 16 21 N -0.93 -51.29 11.61 21.65 0.25 -51.04 16 22 Si 0.97 41.99 29.59 68.60 2.03 44.02 16 23 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 24 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 25 H -0.30 -13.13 7.11 99.48 0.71 -12.42 16 26 C 0.13 5.48 6.68 86.43 0.58 6.06 16 27 C 0.11 3.80 6.59 86.43 0.57 4.37 16 28 H 0.10 1.73 5.37 -2.38 -0.01 1.71 16 29 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.10 1.46 6.93 -2.39 -0.02 1.44 16 31 H 0.15 2.34 5.45 -2.91 -0.02 2.32 16 32 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 33 H 0.17 1.02 8.06 -2.91 -0.02 1.00 16 34 H 0.16 1.97 8.06 -2.91 -0.02 1.94 16 35 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.11 2.56 4.56 -2.38 -0.01 2.55 16 37 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 38 H 0.07 3.27 6.42 -2.39 -0.02 3.26 16 39 H 0.25 13.49 8.31 -92.71 -0.77 12.72 16 40 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 41 H 0.07 2.90 7.93 -2.39 -0.02 2.88 16 42 H 0.08 2.97 6.99 -2.39 -0.02 2.95 16 43 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -70.43 359.05 4.13 -66.30 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: 1.04 Total: 12.19 kcal Atomic # 6 Polarization: 12.06 SS G_CDS: 5.73 Total: 17.79 kcal Atomic # 7 Polarization: -99.87 SS G_CDS: -4.20 Total: -104.07 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: -0.39 Total: -34.11 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Atomic # 17 Polarization: -2.05 SS G_CDS: -0.08 Total: -2.13 kcal Total: -70.43 4.13 -66.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130104398.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.732 kcal (2) G-P(sol) polarization free energy of solvation -70.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds