Wall clock time and date at job start Tue Mar 31 2020 20:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47061 * 2 1 4 4 C 1.50703 * 109.47085 * 120.00501 * 2 1 3 5 5 H 1.08001 * 119.99535 * 120.00171 * 4 2 1 6 6 C 1.37875 * 119.99830 * 299.99812 * 4 2 1 7 7 N 1.31519 * 119.99845 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 120.00084 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47200 * 89.99769 * 8 6 4 10 10 H 1.48500 * 109.47096 * 209.99865 * 8 6 4 11 11 H 1.48501 * 109.47050 * 329.99746 * 8 6 4 12 12 N 1.46508 * 109.47057 * 240.00381 * 2 1 3 13 13 C 1.46503 * 119.99739 * 299.99850 * 12 2 1 14 14 C 1.34774 * 119.99869 * 120.00249 * 12 2 1 15 15 O 1.21285 * 120.00144 * 359.97438 * 14 12 2 16 16 C 1.50700 * 119.99700 * 179.97438 * 14 12 2 17 17 N 1.46902 * 109.46818 * 174.63677 * 16 14 12 18 18 C 1.46750 * 111.00038 * 69.82822 * 17 16 14 19 19 C 1.53424 * 108.60309 * 185.00843 * 18 17 16 20 20 O 1.43147 * 107.88536 * 63.28791 * 19 18 17 21 21 C 1.36183 * 116.66157 * 314.64209 * 20 19 18 22 22 C 1.38774 * 118.72776 * 194.87168 * 21 20 19 23 23 C 1.38172 * 120.22283 * 180.20724 * 22 21 20 24 24 C 1.38365 * 120.01292 * 0.03393 * 23 22 21 25 25 Cl 1.73597 * 119.95602 * 179.87526 * 24 23 22 26 26 C 1.38160 * 120.09001 * 359.90486 * 24 23 22 27 27 C 1.38956 * 121.37636 * 14.91126 * 21 20 19 28 28 H 1.09000 * 109.47417 * 299.99700 * 1 2 3 29 29 H 1.09004 * 109.47365 * 59.99679 * 1 2 3 30 30 H 1.09004 * 109.47444 * 179.97438 * 1 2 3 31 31 H 0.97000 * 119.99712 * 180.02562 * 7 6 4 32 32 H 1.08994 * 109.46752 * 90.00561 * 13 12 2 33 33 H 1.08994 * 109.46797 * 329.99893 * 13 12 2 34 34 H 1.08994 * 109.46652 * 210.00019 * 13 12 2 35 35 H 1.08998 * 109.47178 * 294.63516 * 16 14 12 36 36 H 1.09000 * 109.47193 * 54.63897 * 16 14 12 37 37 H 1.08993 * 109.62033 * 304.74610 * 18 17 16 38 38 H 1.09006 * 109.61334 * 65.27916 * 18 17 16 39 39 H 1.09000 * 109.78152 * 182.88139 * 19 18 17 40 40 H 1.08994 * 109.78104 * 303.69128 * 19 18 17 41 41 H 1.07995 * 119.88683 * 0.22927 * 22 21 20 42 42 H 1.07998 * 119.99681 * 180.02562 * 23 22 21 43 43 H 1.07996 * 119.88678 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6992 -0.2395 2.4827 7 7 2.1380 -0.8593 3.5565 8 14 0.6247 1.2789 2.6542 9 1 -0.8029 0.8725 2.6998 10 1 0.9758 1.9948 3.9069 11 1 0.8470 2.1764 1.4922 12 7 2.0183 -0.6906 -1.1963 13 6 1.6643 -2.0932 -1.4281 14 6 2.7932 -0.0355 -2.0834 15 8 3.0858 1.1258 -1.8916 16 6 3.2959 -0.7461 -3.3136 17 7 4.0034 0.2097 -4.1762 18 6 5.2720 0.6276 -3.5682 19 6 5.9023 1.7142 -4.4491 20 8 5.0224 2.8433 -4.4516 21 6 3.6970 2.5848 -4.6283 22 6 2.8495 3.6356 -4.9496 23 6 1.4987 3.4089 -5.1316 24 6 0.9865 2.1311 -4.9928 25 17 -0.7114 1.8486 -5.2186 26 6 1.8243 1.0798 -4.6743 27 6 3.1862 1.2997 -4.4924 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.9033 -0.5282 4.4375 32 1 0.7376 -2.1443 -1.9995 33 1 1.5295 -2.5968 -0.4710 34 1 2.4628 -2.5818 -1.9865 35 1 3.9779 -1.5437 -3.0192 36 1 2.4526 -1.1713 -3.8577 37 1 5.0860 1.0271 -2.5713 38 1 5.9456 -0.2269 -3.5030 39 1 6.8714 2.0029 -4.0421 40 1 6.0250 1.3400 -5.4654 41 1 3.2471 4.6338 -5.0582 42 1 0.8425 4.2293 -5.3820 43 1 1.4211 0.0837 -4.5672 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172772597.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:54 Heat of formation + Delta-G solvation = -19.075034 kcal Electronic energy + Delta-G solvation = -28520.086348 eV Core-core repulsion = 24592.651388 eV Total energy + Delta-G solvation = -3927.434960 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.38662 -39.27400 -37.75376 -36.65895 -36.07625 -35.26525 -32.89799 -31.00321 -30.71304 -30.31678 -28.97248 -26.35222 -25.79668 -25.13262 -24.28650 -22.67580 -21.19883 -20.28482 -18.59432 -18.32161 -17.34338 -17.00940 -16.79743 -16.28760 -15.67900 -15.43236 -15.15129 -14.79539 -14.47837 -14.25567 -14.04316 -13.93831 -13.51855 -13.21856 -12.95624 -12.68869 -12.62055 -12.29549 -12.26615 -12.04854 -11.99955 -11.86687 -11.63049 -11.55610 -11.18874 -10.97883 -10.79732 -10.77548 -10.60044 -10.27448 -10.12397 -9.68972 -9.44292 -9.21894 -8.69060 -8.41743 -7.84169 -7.54532 -6.20976 -4.22078 1.25662 1.27295 2.18671 3.03541 3.16425 3.20177 3.33611 3.36747 3.43320 3.65216 3.89299 4.30369 4.48033 4.61190 4.85389 4.86495 5.05407 5.06244 5.13465 5.15799 5.21247 5.25043 5.35370 5.49046 5.57728 5.68632 5.75711 5.85210 5.92042 6.04235 6.19285 6.21743 6.24692 6.29621 6.39026 6.44034 6.67412 6.78568 6.85829 7.04079 7.25904 7.36728 7.55856 8.05241 8.38466 8.69822 8.79681 9.40146 10.91487 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.011476 B = 0.004558 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.186591 B = 6141.977832 C = 7085.154167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.231 3.769 3 H 0.061 0.939 4 C -0.529 4.529 5 H 0.078 0.922 6 C 0.077 3.923 7 N -0.894 5.894 8 Si 0.882 3.118 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.264 1.264 12 N -0.580 5.580 13 C 0.078 3.922 14 C 0.476 3.524 15 O -0.541 6.541 16 C 0.031 3.969 17 N -0.467 5.467 18 C -0.001 4.001 19 C 0.063 3.937 20 O -0.311 6.311 21 C 0.109 3.891 22 C -0.115 4.115 23 C -0.108 4.108 24 C -0.036 4.036 25 Cl -0.076 7.076 26 C -0.116 4.116 27 C 0.086 3.914 28 H 0.049 0.951 29 H 0.033 0.967 30 H 0.055 0.945 31 H 0.266 0.734 32 H 0.047 0.953 33 H 0.088 0.912 34 H 0.057 0.943 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.114 0.886 40 H 0.072 0.928 41 H 0.138 0.862 42 H 0.135 0.865 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.990 1.699 -19.404 19.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.129 3.871 3 H 0.079 0.921 4 C -0.567 4.567 5 H 0.096 0.904 6 C -0.126 4.126 7 N -0.531 5.531 8 Si 0.712 3.288 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.188 1.188 12 N -0.311 5.311 13 C -0.066 4.066 14 C 0.261 3.739 15 O -0.419 6.419 16 C -0.098 4.098 17 N -0.181 5.181 18 C -0.127 4.127 19 C -0.013 4.013 20 O -0.225 6.225 21 C 0.061 3.939 22 C -0.134 4.134 23 C -0.127 4.127 24 C -0.064 4.064 25 Cl -0.047 7.047 26 C -0.137 4.137 27 C -0.013 4.013 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.107 0.893 34 H 0.075 0.925 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.107 0.893 38 H 0.116 0.884 39 H 0.132 0.868 40 H 0.090 0.910 41 H 0.156 0.844 42 H 0.153 0.847 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.265 2.149 -19.475 19.724 hybrid contribution -0.981 0.522 1.055 1.532 sum 1.284 2.671 -18.420 18.657 Atomic orbital electron populations 1.22429 0.98968 1.01062 0.99296 1.19282 0.90038 0.95115 0.82692 0.92108 1.21128 1.32860 1.14268 0.88489 0.90359 1.24849 0.95586 0.96537 0.95626 1.69870 1.45077 1.40168 0.98003 0.86930 0.80497 0.83846 0.77524 1.20336 1.22095 1.18844 1.47918 1.48649 1.11787 1.22750 1.21715 0.99030 0.82694 1.03135 1.21193 0.79822 0.87684 0.85191 1.90683 1.58089 1.16757 1.76399 1.22494 1.00379 0.95472 0.91471 1.59269 1.04675 1.13097 1.41073 1.23058 0.90348 0.99900 0.99429 1.23118 0.92836 0.85047 1.00257 1.86221 1.14170 1.33997 1.88102 1.18562 0.83971 0.91704 0.99633 1.20290 0.91934 0.98335 1.02871 1.20646 0.94576 0.95332 1.02171 1.20435 0.84765 0.94785 1.06387 1.98349 1.14089 1.96618 1.95692 1.20579 0.90876 0.98996 1.03285 1.18475 0.91815 0.89392 1.01611 0.93220 0.94790 0.92598 0.92378 0.93450 0.89315 0.92476 0.86968 0.87347 0.89291 0.88384 0.86798 0.90956 0.84433 0.84679 0.84957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.44 8.67 37.15 0.32 -3.11 16 2 C 0.23 5.44 2.23 -69.08 -0.15 5.29 16 3 H 0.06 1.63 5.96 -51.93 -0.31 1.32 16 4 C -0.53 -14.28 8.57 -34.44 -0.30 -14.57 16 5 H 0.08 2.25 7.58 -52.49 -0.40 1.85 16 6 C 0.08 2.17 5.45 -17.82 -0.10 2.08 16 7 N -0.89 -26.56 13.96 55.43 0.77 -25.78 16 8 Si 0.88 21.90 24.37 -169.99 -4.14 17.76 16 9 H -0.28 -6.58 6.87 56.52 0.39 -6.19 16 10 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 11 H -0.26 -6.55 6.53 56.52 0.37 -6.18 16 12 N -0.58 -11.23 2.75 -175.26 -0.48 -11.71 16 13 C 0.08 1.17 9.14 59.85 0.55 1.71 16 14 C 0.48 8.75 6.40 -10.99 -0.07 8.68 16 15 O -0.54 -11.93 12.24 5.55 0.07 -11.86 16 16 C 0.03 0.41 3.82 -4.97 -0.02 0.40 16 17 N -0.47 -6.35 4.84 -172.19 -0.83 -7.19 16 18 C 0.00 -0.01 5.45 -3.69 -0.02 -0.03 16 19 C 0.06 0.70 7.26 37.38 0.27 0.97 16 20 O -0.31 -4.55 10.40 -20.32 -0.21 -4.76 16 21 C 0.11 1.67 6.47 -39.12 -0.25 1.42 16 22 C -0.11 -1.59 9.94 -39.41 -0.39 -1.98 16 23 C -0.11 -1.43 9.83 -39.56 -0.39 -1.82 16 24 C -0.04 -0.52 6.31 -39.56 -0.25 -0.77 16 25 Cl -0.08 -1.00 28.95 -51.86 -1.50 -2.50 16 26 C -0.12 -1.72 8.13 -39.27 -0.32 -2.04 16 27 C 0.09 1.31 3.89 -83.59 -0.32 0.98 16 28 H 0.05 1.13 3.27 -51.93 -0.17 0.96 16 29 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 1.11 7.67 -51.93 -0.40 0.71 16 31 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 1.50 7.02 -51.93 -0.36 1.13 16 34 H 0.06 0.66 6.59 -51.93 -0.34 0.32 16 35 H 0.11 1.24 7.61 -51.93 -0.40 0.85 16 36 H 0.11 1.22 6.24 -51.93 -0.32 0.90 16 37 H 0.09 1.47 5.99 -51.93 -0.31 1.16 16 38 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 42 H 0.14 1.46 8.06 -52.49 -0.42 1.03 16 43 H 0.13 1.81 6.13 -52.49 -0.32 1.48 16 LS Contribution 348.76 15.07 5.26 5.26 Total: -1.00 -33.07 348.76 -7.99 -41.06 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -5.47 Total: 2.52 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -1.44 Total: -2.80 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: -0.54 Total: -44.68 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.14 Total: -16.62 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.14 Total: 17.76 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.50 Total: -2.50 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.07 -7.99 -41.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172772597.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.989 kcal (2) G-P(sol) polarization free energy of solvation -33.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds