Wall clock time and date at job start Tue Mar 31 2020 20:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47061 * 2 1 4 4 C 1.50703 * 109.47085 * 120.00501 * 2 1 3 5 5 H 1.08001 * 119.99535 * 120.00171 * 4 2 1 6 6 C 1.37875 * 119.99830 * 299.99812 * 4 2 1 7 7 N 1.31519 * 119.99845 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 120.00084 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47200 * 89.99769 * 8 6 4 10 10 H 1.48500 * 109.47096 * 209.99865 * 8 6 4 11 11 H 1.48501 * 109.47050 * 329.99746 * 8 6 4 12 12 N 1.46508 * 109.47057 * 240.00381 * 2 1 3 13 13 C 1.46503 * 119.99739 * 299.99850 * 12 2 1 14 14 C 1.34774 * 119.99869 * 120.00249 * 12 2 1 15 15 O 1.21285 * 120.00144 * 359.97438 * 14 12 2 16 16 C 1.50700 * 119.99700 * 179.97438 * 14 12 2 17 17 N 1.46902 * 109.46818 * 174.63677 * 16 14 12 18 18 C 1.46750 * 111.00038 * 69.82822 * 17 16 14 19 19 C 1.53424 * 108.60309 * 185.00843 * 18 17 16 20 20 O 1.43147 * 107.88536 * 63.28791 * 19 18 17 21 21 C 1.36183 * 116.66157 * 314.64209 * 20 19 18 22 22 C 1.38774 * 118.72776 * 194.87168 * 21 20 19 23 23 C 1.38172 * 120.22283 * 180.20724 * 22 21 20 24 24 C 1.38365 * 120.01292 * 0.03393 * 23 22 21 25 25 Cl 1.73597 * 119.95602 * 179.87526 * 24 23 22 26 26 C 1.38160 * 120.09001 * 359.90486 * 24 23 22 27 27 C 1.38956 * 121.37636 * 14.91126 * 21 20 19 28 28 H 1.09000 * 109.47417 * 299.99700 * 1 2 3 29 29 H 1.09004 * 109.47365 * 59.99679 * 1 2 3 30 30 H 1.09004 * 109.47444 * 179.97438 * 1 2 3 31 31 H 0.97000 * 119.99712 * 180.02562 * 7 6 4 32 32 H 1.08994 * 109.46752 * 90.00561 * 13 12 2 33 33 H 1.08994 * 109.46797 * 329.99893 * 13 12 2 34 34 H 1.08994 * 109.46652 * 210.00019 * 13 12 2 35 35 H 1.08998 * 109.47178 * 294.63516 * 16 14 12 36 36 H 1.09000 * 109.47193 * 54.63897 * 16 14 12 37 37 H 1.08993 * 109.62033 * 304.74610 * 18 17 16 38 38 H 1.09006 * 109.61334 * 65.27916 * 18 17 16 39 39 H 1.09000 * 109.78152 * 182.88139 * 19 18 17 40 40 H 1.08994 * 109.78104 * 303.69128 * 19 18 17 41 41 H 1.07995 * 119.88683 * 0.22927 * 22 21 20 42 42 H 1.07998 * 119.99681 * 180.02562 * 23 22 21 43 43 H 1.07996 * 119.88678 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6992 -0.2395 2.4827 7 7 2.1380 -0.8593 3.5565 8 14 0.6247 1.2789 2.6542 9 1 -0.8029 0.8725 2.6998 10 1 0.9758 1.9948 3.9069 11 1 0.8470 2.1764 1.4922 12 7 2.0183 -0.6906 -1.1963 13 6 1.6643 -2.0932 -1.4281 14 6 2.7932 -0.0355 -2.0834 15 8 3.0858 1.1258 -1.8916 16 6 3.2959 -0.7461 -3.3136 17 7 4.0034 0.2097 -4.1762 18 6 5.2720 0.6276 -3.5682 19 6 5.9023 1.7142 -4.4491 20 8 5.0224 2.8433 -4.4516 21 6 3.6970 2.5848 -4.6283 22 6 2.8495 3.6356 -4.9496 23 6 1.4987 3.4089 -5.1316 24 6 0.9865 2.1311 -4.9928 25 17 -0.7114 1.8486 -5.2186 26 6 1.8243 1.0798 -4.6743 27 6 3.1862 1.2997 -4.4924 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.9033 -0.5282 4.4375 32 1 0.7376 -2.1443 -1.9995 33 1 1.5295 -2.5968 -0.4710 34 1 2.4628 -2.5818 -1.9865 35 1 3.9779 -1.5437 -3.0192 36 1 2.4526 -1.1713 -3.8577 37 1 5.0860 1.0271 -2.5713 38 1 5.9456 -0.2269 -3.5030 39 1 6.8714 2.0029 -4.0421 40 1 6.0250 1.3400 -5.4654 41 1 3.2471 4.6338 -5.0582 42 1 0.8425 4.2293 -5.3820 43 1 1.4211 0.0837 -4.5672 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172772597.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:53 Heat of formation + Delta-G solvation = -42.202172 kcal Electronic energy + Delta-G solvation = -28521.089216 eV Core-core repulsion = 24592.651388 eV Total energy + Delta-G solvation = -3928.437828 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.47169 -40.62541 -38.77301 -37.93969 -37.14474 -36.69919 -34.82590 -32.63230 -31.83320 -31.36409 -30.13920 -27.65164 -27.22717 -26.83117 -25.28557 -23.91209 -22.68863 -21.35557 -20.04190 -19.37159 -19.01560 -18.26433 -18.09261 -17.65774 -17.23814 -16.58133 -16.44778 -16.13290 -15.79811 -15.39232 -15.15298 -15.06450 -14.94534 -14.70089 -14.33622 -14.13042 -13.95042 -13.82358 -13.64129 -13.32255 -13.11917 -13.01071 -12.99046 -12.86339 -12.69052 -12.55614 -12.11800 -11.98475 -11.79806 -11.67034 -11.60155 -11.39709 -11.32030 -10.83481 -10.58290 -9.49401 -9.39717 -8.64198 -8.39002 -6.42378 0.19621 0.20563 1.13763 1.21234 1.30941 1.38784 1.67849 2.15017 2.22964 2.24771 2.45674 2.83472 2.96909 3.48773 3.60735 3.68132 3.91539 4.05065 4.14908 4.20489 4.26605 4.30182 4.35784 4.42115 4.45074 4.54382 4.58423 4.62897 4.69162 4.72720 4.79081 4.90174 4.97520 5.00507 5.08231 5.20704 5.26276 5.38603 5.46844 5.63928 5.69375 5.82008 6.16353 6.34078 6.59833 6.70598 7.18106 7.33069 8.76686 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.011476 B = 0.004558 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.186591 B = 6141.977832 C = 7085.154167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.236 3.764 3 H 0.025 0.975 4 C -0.522 4.522 5 H 0.050 0.950 6 C 0.027 3.973 7 N -0.937 5.937 8 Si 0.936 3.064 9 H -0.255 1.255 10 H -0.296 1.296 11 H -0.268 1.268 12 N -0.591 5.591 13 C 0.074 3.926 14 C 0.470 3.530 15 O -0.583 6.583 16 C 0.040 3.960 17 N -0.458 5.458 18 C -0.002 4.002 19 C 0.059 3.941 20 O -0.329 6.329 21 C 0.087 3.913 22 C -0.124 4.124 23 C -0.108 4.108 24 C -0.050 4.050 25 Cl -0.068 7.068 26 C -0.127 4.127 27 C 0.069 3.931 28 H 0.037 0.963 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.268 0.732 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.141 0.859 36 H 0.136 0.864 37 H 0.047 0.953 38 H 0.129 0.871 39 H 0.139 0.861 40 H 0.091 0.909 41 H 0.155 0.845 42 H 0.158 0.842 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.408 1.231 -21.581 21.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.132 3.868 3 H 0.043 0.957 4 C -0.560 4.560 5 H 0.068 0.932 6 C -0.172 4.172 7 N -0.576 5.576 8 Si 0.763 3.237 9 H -0.181 1.181 10 H -0.223 1.223 11 H -0.194 1.194 12 N -0.321 5.321 13 C -0.068 4.068 14 C 0.258 3.742 15 O -0.464 6.464 16 C -0.089 4.089 17 N -0.172 5.172 18 C -0.129 4.129 19 C -0.015 4.015 20 O -0.243 6.243 21 C 0.040 3.960 22 C -0.144 4.144 23 C -0.128 4.128 24 C -0.077 4.077 25 Cl -0.039 7.039 26 C -0.148 4.148 27 C -0.029 4.029 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.113 0.887 35 H 0.159 0.841 36 H 0.153 0.847 37 H 0.066 0.934 38 H 0.147 0.853 39 H 0.156 0.844 40 H 0.109 0.891 41 H 0.172 0.828 42 H 0.175 0.825 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.672 1.651 -21.688 21.815 hybrid contribution -0.713 0.649 1.686 1.942 sum 0.960 2.299 -20.003 20.157 Atomic orbital electron populations 1.22281 0.97007 1.02161 0.99478 1.18847 0.91433 0.93174 0.83315 0.95744 1.21356 1.31562 1.13088 0.90025 0.93159 1.25555 0.97059 0.99102 0.95526 1.69985 1.47060 1.42017 0.98555 0.86066 0.80107 0.80595 0.76889 1.18079 1.22319 1.19353 1.47973 1.49085 1.13429 1.21651 1.21951 1.01906 0.80162 1.02819 1.22132 0.78629 0.87379 0.86107 1.90671 1.59241 1.18940 1.77547 1.22643 1.01864 0.95353 0.89081 1.59401 1.04645 1.12700 1.40494 1.23110 0.90785 1.01479 0.97503 1.23414 0.93007 0.83936 1.01163 1.86184 1.14251 1.35708 1.88169 1.18903 0.84586 0.92366 1.00163 1.20622 0.92210 0.98986 1.02547 1.20952 0.94733 0.95794 1.01306 1.20635 0.85284 0.95190 1.06578 1.98346 1.13325 1.96611 1.95652 1.20767 0.90920 0.99664 1.03440 1.18675 0.92335 0.89916 1.01968 0.94405 0.93110 0.91012 0.92278 0.90666 0.91734 0.88668 0.84125 0.84668 0.93421 0.85302 0.84371 0.89125 0.82767 0.82465 0.84000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.30 8.67 71.98 0.62 -5.67 16 2 C 0.24 11.14 2.23 44.24 0.10 11.24 16 3 H 0.02 1.34 5.96 -2.39 -0.01 1.33 16 4 C -0.52 -28.68 8.57 25.60 0.22 -28.46 16 5 H 0.05 2.98 7.58 -2.91 -0.02 2.96 16 6 C 0.03 1.52 5.45 84.65 0.46 1.98 16 7 N -0.94 -56.90 13.96 21.45 0.30 -56.60 16 8 Si 0.94 45.62 24.37 68.60 1.67 47.29 16 9 H -0.26 -11.49 6.87 99.48 0.68 -10.81 16 10 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 11 H -0.27 -13.19 6.53 99.48 0.65 -12.54 16 12 N -0.59 -22.20 2.75 -826.80 -2.28 -24.48 16 13 C 0.07 2.03 9.14 127.77 1.17 3.19 16 14 C 0.47 16.76 6.40 87.66 0.56 17.33 16 15 O -0.58 -25.99 12.24 -3.05 -0.04 -26.02 16 16 C 0.04 0.94 3.82 85.56 0.33 1.27 16 17 N -0.46 -11.52 4.84 -698.68 -3.38 -14.91 16 18 C 0.00 -0.06 5.45 86.47 0.47 0.41 16 19 C 0.06 1.23 7.26 72.12 0.52 1.75 16 20 O -0.33 -9.42 10.40 -95.63 -1.00 -10.41 16 21 C 0.09 2.63 6.47 22.57 0.15 2.78 16 22 C -0.12 -3.34 9.94 22.38 0.22 -3.12 16 23 C -0.11 -2.74 9.83 22.28 0.22 -2.52 16 24 C -0.05 -1.35 6.31 22.28 0.14 -1.21 16 25 Cl -0.07 -1.66 28.95 -2.72 -0.08 -1.74 16 26 C -0.13 -3.56 8.13 22.47 0.18 -3.38 16 27 C 0.07 2.03 3.89 38.25 0.15 2.18 16 28 H 0.04 1.65 3.27 -2.39 -0.01 1.64 16 29 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.07 2.71 7.67 -2.38 -0.02 2.70 16 31 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 32 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.06 2.11 7.02 -2.39 -0.02 2.09 16 34 H 0.09 1.86 6.59 -2.39 -0.02 1.85 16 35 H 0.14 2.55 7.61 -2.39 -0.02 2.54 16 36 H 0.14 2.50 6.24 -2.39 -0.01 2.49 16 37 H 0.05 1.58 5.99 -2.39 -0.01 1.57 16 38 H 0.13 2.20 8.14 -2.38 -0.02 2.18 16 39 H 0.14 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 42 H 0.16 3.11 8.06 -2.91 -0.02 3.08 16 43 H 0.14 3.53 6.13 -2.91 -0.02 3.51 16 Total: -1.00 -74.78 348.76 1.68 -73.10 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 0.96 Total: 16.00 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: 5.51 Total: -2.23 kcal Atomic # 7 Polarization: -90.62 SS G_CDS: -5.36 Total: -95.98 kcal Atomic # 8 Polarization: -35.41 SS G_CDS: -1.03 Total: -36.44 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.67 Total: 47.29 kcal Atomic # 17 Polarization: -1.66 SS G_CDS: -0.08 Total: -1.74 kcal Total: -74.78 1.68 -73.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172772597.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.895 kcal (2) G-P(sol) polarization free energy of solvation -74.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds