Wall clock time and date at job start Tue Mar 31 2020 20:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47082 * 2 1 4 4 C 1.50702 * 109.47039 * 239.99715 * 2 1 3 5 5 H 1.08002 * 119.99528 * 239.99923 * 4 2 1 6 6 C 1.37871 * 120.00107 * 60.00595 * 4 2 1 7 7 N 1.31513 * 120.00063 * 179.72405 * 6 4 2 8 8 Si 1.86800 * 120.00145 * 359.97438 * 6 4 2 9 9 H 1.48493 * 109.47530 * 269.72990 * 8 6 4 10 10 H 1.48512 * 109.46955 * 29.72991 * 8 6 4 11 11 H 1.48500 * 109.47386 * 149.72762 * 8 6 4 12 12 N 1.46498 * 109.46980 * 119.99853 * 2 1 3 13 13 C 1.46499 * 120.00067 * 60.00005 * 12 2 1 14 14 C 1.34776 * 119.99970 * 240.00213 * 12 2 1 15 15 O 1.21356 * 120.00061 * 356.41327 * 14 12 2 16 16 C 1.49356 * 119.99909 * 176.41455 * 14 12 2 17 17 O 1.21378 * 120.00282 * 5.94437 * 16 14 12 18 18 N 1.34781 * 119.99821 * 185.94026 * 16 14 12 19 19 C 1.46523 * 124.95729 * 354.93865 * 18 16 14 20 20 C 1.53751 * 105.19773 * 179.97438 * 19 18 16 21 21 C 1.51227 * 104.54302 * 0.02562 * 20 19 18 22 22 C 1.38637 * 108.54087 * 359.76401 * 21 20 19 23 23 C 1.39629 * 119.06758 * 179.71895 * 22 21 20 24 24 C 1.38093 * 120.31424 * 0.51484 * 23 22 21 25 25 F 1.35099 * 119.89823 * 179.74912 * 24 23 22 26 26 C 1.38453 * 120.20440 * 359.73674 * 24 23 22 27 27 C 1.38356 * 130.96082 * 180.02562 * 21 20 19 28 28 F 1.35104 * 119.93793 * 359.95903 * 27 21 20 29 29 H 1.09008 * 109.47004 * 60.00374 * 1 2 3 30 30 H 1.09001 * 109.47082 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47037 * 300.00167 * 1 2 3 32 32 H 0.97004 * 120.00159 * 180.26818 * 7 6 4 33 33 H 1.08997 * 109.47451 * 95.98499 * 13 12 2 34 34 H 1.09003 * 109.47032 * 215.98754 * 13 12 2 35 35 H 1.09001 * 109.47053 * 335.98597 * 13 12 2 36 36 H 1.09002 * 110.30306 * 298.89548 * 19 18 16 37 37 H 1.09000 * 110.29756 * 60.93613 * 19 18 16 38 38 H 1.09005 * 110.41654 * 118.76650 * 20 19 18 39 39 H 1.08994 * 110.42624 * 241.23447 * 20 19 18 40 40 H 1.08009 * 119.84178 * 180.27092 * 23 22 21 41 41 H 1.07997 * 120.10869 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 2.1422 -0.8563 -3.5564 8 14 0.6250 1.2790 -2.6542 9 1 -0.8022 0.8723 -2.7065 10 1 0.8424 2.1735 -1.4888 11 1 0.9807 1.9986 -3.9036 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.7931 -0.0356 2.0834 15 8 3.1401 1.1056 1.8596 16 6 3.2248 -0.7142 3.3419 17 8 2.9697 -1.8879 3.5168 18 7 3.8976 -0.0232 4.2834 19 6 4.3540 1.3620 4.1425 20 6 5.0597 1.6907 5.4684 21 6 4.9446 0.4226 6.2844 22 6 4.2572 -0.5215 5.5373 23 6 4.0309 -1.7860 6.0845 24 6 4.4777 -2.0850 7.3565 25 9 4.2498 -3.3096 7.8797 26 6 5.1587 -1.1339 8.0972 27 6 5.3912 0.1203 7.5585 28 9 6.0556 1.0506 8.2785 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.9112 -0.5226 -4.4375 33 1 2.4673 -2.7352 1.0658 34 1 1.5196 -2.2596 2.4955 35 1 0.7429 -2.3282 0.8954 36 1 5.0535 1.4470 3.3109 37 1 3.5037 2.0266 3.9900 38 1 6.1072 1.9348 5.2913 39 1 4.5562 2.5151 5.9731 40 1 3.5006 -2.5324 5.5118 41 1 5.5070 -1.3694 9.0919 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190153311.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:01 Heat of formation + Delta-G solvation = -91.990496 kcal Electronic energy + Delta-G solvation = -29388.044757 eV Core-core repulsion = 24905.651265 eV Total energy + Delta-G solvation = -4482.393492 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.30775 -49.26258 -41.63802 -39.78048 -38.11877 -36.76811 -35.69008 -32.89818 -32.43488 -30.64071 -30.41858 -28.96704 -26.61353 -25.69088 -25.13352 -23.60563 -23.12292 -22.13056 -20.75252 -19.18265 -18.21209 -17.70845 -17.08352 -16.92720 -16.65991 -16.53399 -16.12314 -16.06974 -15.73241 -15.67839 -15.61096 -15.17495 -14.77270 -14.60008 -14.04242 -13.79355 -13.40656 -13.15235 -13.08459 -12.63664 -12.56764 -12.40295 -12.36444 -12.22975 -12.19181 -12.09333 -11.90686 -11.78348 -11.31181 -10.85427 -10.76642 -10.42445 -10.26420 -9.74612 -9.49103 -9.08213 -8.99715 -8.74894 -8.35897 -7.98795 -6.24588 -4.27325 0.49433 0.62538 1.61339 2.06359 2.97841 3.15236 3.27882 3.29415 3.34916 3.39942 3.61216 3.98740 4.04953 4.12166 4.24516 4.42353 4.57516 4.65266 4.84856 4.91440 5.07194 5.32848 5.37211 5.53237 5.56712 5.62427 5.64593 5.71760 5.79456 5.92144 6.05633 6.06805 6.16600 6.27042 6.40179 6.46429 6.66994 6.75941 6.86132 7.00763 7.42837 7.45577 7.86105 8.21384 8.40350 8.76763 9.33817 10.87858 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.022052 B = 0.002884 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.404968 B = 9706.275206 C =10535.634339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.228 3.772 3 H 0.067 0.933 4 C -0.533 4.533 5 H 0.081 0.919 6 C 0.078 3.922 7 N -0.890 5.890 8 Si 0.883 3.117 9 H -0.276 1.276 10 H -0.263 1.263 11 H -0.292 1.292 12 N -0.543 5.543 13 C 0.070 3.930 14 C 0.499 3.501 15 O -0.528 6.528 16 C 0.520 3.480 17 O -0.486 6.486 18 N -0.533 5.533 19 C 0.110 3.890 20 C -0.082 4.082 21 C -0.184 4.184 22 C 0.211 3.789 23 C -0.181 4.181 24 C 0.159 3.841 25 F -0.126 7.126 26 C -0.216 4.216 27 C 0.172 3.828 28 F -0.127 7.127 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.035 0.965 32 H 0.268 0.732 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.161 0.839 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.839 2.384 21.823 22.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.127 3.873 3 H 0.084 0.916 4 C -0.571 4.571 5 H 0.099 0.901 6 C -0.125 4.125 7 N -0.527 5.527 8 Si 0.712 3.288 9 H -0.202 1.202 10 H -0.188 1.188 11 H -0.219 1.219 12 N -0.273 5.273 13 C -0.072 4.072 14 C 0.280 3.720 15 O -0.407 6.407 16 C 0.306 3.694 17 O -0.359 6.359 18 N -0.255 5.255 19 C -0.011 4.011 20 C -0.120 4.120 21 C -0.189 4.189 22 C 0.114 3.886 23 C -0.203 4.203 24 C 0.138 3.862 25 F -0.104 7.104 26 C -0.237 4.237 27 C 0.152 3.848 28 F -0.106 7.106 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.178 0.822 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.786 2.303 21.385 21.840 hybrid contribution -0.499 0.490 -0.116 0.709 sum 3.287 2.793 21.269 21.702 Atomic orbital electron populations 1.22489 0.98419 1.01592 0.99604 1.19529 0.90402 0.95206 0.82168 0.91550 1.21083 1.33252 1.14563 0.88187 0.90095 1.24850 0.95583 0.96593 0.95511 1.69864 1.44708 1.40074 0.98052 0.86924 0.80504 0.83663 0.77663 1.20245 1.18775 1.21940 1.47883 1.45605 1.12753 1.21053 1.22220 1.01632 0.80727 1.02647 1.19336 0.81917 0.86723 0.84036 1.90715 1.55623 1.17585 1.76749 1.20889 0.77628 0.86356 0.84527 1.90655 1.51667 1.15231 1.78323 1.45756 1.52216 1.15445 1.12109 1.22418 1.00832 0.79774 0.98065 1.21189 1.02869 0.94731 0.93167 1.19967 1.05745 0.98515 0.94636 1.17657 0.93477 0.92442 0.85069 1.20866 1.06691 0.97225 0.95480 1.16730 0.97439 0.80569 0.91421 1.91550 1.92494 1.40125 1.86258 1.20846 1.07188 0.92575 1.03056 1.16307 0.94396 0.86144 0.87992 1.91530 1.77762 1.64182 1.77093 0.92692 0.92110 0.94591 0.92228 0.92250 0.89357 0.90744 0.88164 0.88138 0.88446 0.88505 0.82190 0.83023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.31 8.66 37.16 0.32 -2.99 16 2 C 0.23 5.21 2.22 -69.08 -0.15 5.06 16 3 H 0.07 1.63 5.96 -51.93 -0.31 1.32 16 4 C -0.53 -14.25 8.95 -34.44 -0.31 -14.56 16 5 H 0.08 2.36 7.89 -52.49 -0.41 1.95 16 6 C 0.08 2.15 5.45 -17.82 -0.10 2.06 16 7 N -0.89 -26.09 13.96 55.43 0.77 -25.32 16 8 Si 0.88 20.79 24.37 -169.99 -4.14 16.65 16 9 H -0.28 -6.22 6.88 56.52 0.39 -5.83 16 10 H -0.26 -6.00 6.52 56.52 0.37 -5.63 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 N -0.54 -10.91 2.75 -175.81 -0.48 -11.40 16 13 C 0.07 1.23 8.75 59.85 0.52 1.75 16 14 C 0.50 9.40 7.69 -11.63 -0.09 9.31 16 15 O -0.53 -10.57 13.41 5.49 0.07 -10.49 16 16 C 0.52 8.38 7.73 -11.63 -0.09 8.29 16 17 O -0.49 -8.02 11.31 5.47 0.06 -7.96 16 18 N -0.53 -7.25 3.12 -113.44 -0.35 -7.61 16 19 C 0.11 1.23 5.67 -3.64 -0.02 1.21 16 20 C -0.08 -0.71 6.93 -27.23 -0.19 -0.90 16 21 C -0.18 -1.93 6.21 -104.17 -0.65 -2.58 16 22 C 0.21 2.61 6.62 -83.64 -0.55 2.06 16 23 C -0.18 -2.20 9.43 -39.12 -0.37 -2.56 16 24 C 0.16 1.69 7.28 -39.56 -0.29 1.41 16 25 F -0.13 -1.38 17.26 2.25 0.04 -1.34 16 26 C -0.22 -2.00 10.02 -39.42 -0.39 -2.40 16 27 C 0.17 1.68 7.29 -39.45 -0.29 1.39 16 28 F -0.13 -1.22 17.26 2.25 0.04 -1.18 16 29 H 0.05 1.16 3.28 -51.92 -0.17 0.99 16 30 H 0.06 1.16 6.67 -51.93 -0.35 0.81 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.09 1.41 5.36 -51.93 -0.28 1.13 16 35 H 0.07 1.26 6.44 -51.93 -0.33 0.93 16 36 H 0.10 1.16 7.75 -51.93 -0.40 0.75 16 37 H 0.10 1.13 7.51 -51.93 -0.39 0.74 16 38 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.16 2.10 6.28 -52.48 -0.33 1.77 16 41 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 338.93 15.07 5.11 5.11 Total: -1.00 -29.74 338.93 -5.80 -35.54 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -4.27 Total: 1.45 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: -2.64 Total: 6.56 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: -0.06 Total: -44.33 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: 0.14 Total: -18.45 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.08 Total: -2.52 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.14 Total: 16.65 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.74 -5.80 -35.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190153311.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.454 kcal (2) G-P(sol) polarization free energy of solvation -29.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds