Wall clock time and date at job start Tue Mar 31 2020 20:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47082 * 2 1 4 4 C 1.50702 * 109.47039 * 239.99715 * 2 1 3 5 5 H 1.08002 * 119.99528 * 239.99923 * 4 2 1 6 6 C 1.37871 * 120.00107 * 60.00595 * 4 2 1 7 7 N 1.31513 * 120.00063 * 179.72405 * 6 4 2 8 8 Si 1.86800 * 120.00145 * 359.97438 * 6 4 2 9 9 H 1.48493 * 109.47530 * 269.72990 * 8 6 4 10 10 H 1.48512 * 109.46955 * 29.72991 * 8 6 4 11 11 H 1.48500 * 109.47386 * 149.72762 * 8 6 4 12 12 N 1.46498 * 109.46980 * 119.99853 * 2 1 3 13 13 C 1.46499 * 120.00067 * 60.00005 * 12 2 1 14 14 C 1.34776 * 119.99970 * 240.00213 * 12 2 1 15 15 O 1.21356 * 120.00061 * 356.41327 * 14 12 2 16 16 C 1.49356 * 119.99909 * 176.41455 * 14 12 2 17 17 O 1.21378 * 120.00282 * 5.94437 * 16 14 12 18 18 N 1.34781 * 119.99821 * 185.94026 * 16 14 12 19 19 C 1.46523 * 124.95729 * 354.93865 * 18 16 14 20 20 C 1.53751 * 105.19773 * 179.97438 * 19 18 16 21 21 C 1.51227 * 104.54302 * 0.02562 * 20 19 18 22 22 C 1.38637 * 108.54087 * 359.76401 * 21 20 19 23 23 C 1.39629 * 119.06758 * 179.71895 * 22 21 20 24 24 C 1.38093 * 120.31424 * 0.51484 * 23 22 21 25 25 F 1.35099 * 119.89823 * 179.74912 * 24 23 22 26 26 C 1.38453 * 120.20440 * 359.73674 * 24 23 22 27 27 C 1.38356 * 130.96082 * 180.02562 * 21 20 19 28 28 F 1.35104 * 119.93793 * 359.95903 * 27 21 20 29 29 H 1.09008 * 109.47004 * 60.00374 * 1 2 3 30 30 H 1.09001 * 109.47082 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47037 * 300.00167 * 1 2 3 32 32 H 0.97004 * 120.00159 * 180.26818 * 7 6 4 33 33 H 1.08997 * 109.47451 * 95.98499 * 13 12 2 34 34 H 1.09003 * 109.47032 * 215.98754 * 13 12 2 35 35 H 1.09001 * 109.47053 * 335.98597 * 13 12 2 36 36 H 1.09002 * 110.30306 * 298.89548 * 19 18 16 37 37 H 1.09000 * 110.29756 * 60.93613 * 19 18 16 38 38 H 1.09005 * 110.41654 * 118.76650 * 20 19 18 39 39 H 1.08994 * 110.42624 * 241.23447 * 20 19 18 40 40 H 1.08009 * 119.84178 * 180.27092 * 23 22 21 41 41 H 1.07997 * 120.10869 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 2.1422 -0.8563 -3.5564 8 14 0.6250 1.2790 -2.6542 9 1 -0.8022 0.8723 -2.7065 10 1 0.8424 2.1735 -1.4888 11 1 0.9807 1.9986 -3.9036 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.7931 -0.0356 2.0834 15 8 3.1401 1.1056 1.8596 16 6 3.2248 -0.7142 3.3419 17 8 2.9697 -1.8879 3.5168 18 7 3.8976 -0.0232 4.2834 19 6 4.3540 1.3620 4.1425 20 6 5.0597 1.6907 5.4684 21 6 4.9446 0.4226 6.2844 22 6 4.2572 -0.5215 5.5373 23 6 4.0309 -1.7860 6.0845 24 6 4.4777 -2.0850 7.3565 25 9 4.2498 -3.3096 7.8797 26 6 5.1587 -1.1339 8.0972 27 6 5.3912 0.1203 7.5585 28 9 6.0556 1.0506 8.2785 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.9112 -0.5226 -4.4375 33 1 2.4673 -2.7352 1.0658 34 1 1.5196 -2.2596 2.4955 35 1 0.7429 -2.3282 0.8954 36 1 5.0535 1.4470 3.3109 37 1 3.5037 2.0266 3.9900 38 1 6.1072 1.9348 5.2913 39 1 4.5562 2.5151 5.9731 40 1 3.5006 -2.5324 5.5118 41 1 5.5070 -1.3694 9.0919 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190153311.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:00 Heat of formation + Delta-G solvation = -109.666103 kcal Electronic energy + Delta-G solvation = -29388.811229 eV Core-core repulsion = 24905.651265 eV Total energy + Delta-G solvation = -4483.159964 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.11264 -50.06163 -42.73769 -41.04391 -39.43521 -37.94762 -37.07869 -34.78870 -33.41614 -32.36363 -31.39333 -29.82067 -28.04950 -27.28134 -26.77712 -24.48764 -24.34412 -22.97517 -22.14065 -20.55428 -19.33106 -18.91332 -18.60861 -18.15104 -17.91699 -17.72330 -17.28462 -17.08229 -16.86496 -16.65194 -16.57242 -16.41396 -16.05510 -15.53744 -15.33990 -15.08827 -14.88322 -14.73561 -14.15410 -14.05817 -14.02855 -13.71322 -13.59492 -13.33698 -13.27919 -13.11464 -13.06260 -12.88295 -12.77752 -12.64365 -12.18413 -12.06940 -11.54973 -11.42785 -11.31824 -10.82617 -10.49602 -9.83128 -9.68650 -9.21384 -8.36662 -6.44174 -0.47734 -0.21765 0.39279 0.88769 1.29047 1.37419 1.46109 1.86853 2.11383 2.24692 2.27008 2.76637 2.87474 2.98565 3.18778 3.24174 3.31964 3.75351 3.82744 4.07621 4.09447 4.27997 4.38836 4.48188 4.49866 4.56938 4.59108 4.64249 4.70815 4.78938 4.80792 4.89377 4.89786 4.93848 5.00001 5.06641 5.20106 5.35314 5.51599 5.60848 5.71979 5.99650 6.26895 6.40878 6.59401 6.80172 7.21813 8.79508 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.022052 B = 0.002884 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.404968 B = 9706.275206 C =10535.634339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.232 3.768 3 H 0.051 0.949 4 C -0.535 4.535 5 H 0.040 0.960 6 C 0.024 3.976 7 N -0.939 5.939 8 Si 0.944 3.056 9 H -0.254 1.254 10 H -0.250 1.250 11 H -0.296 1.296 12 N -0.556 5.556 13 C 0.077 3.923 14 C 0.496 3.504 15 O -0.542 6.542 16 C 0.523 3.477 17 O -0.498 6.498 18 N -0.529 5.529 19 C 0.104 3.896 20 C -0.074 4.074 21 C -0.173 4.173 22 C 0.183 3.817 23 C -0.188 4.188 24 C 0.153 3.847 25 F -0.128 7.128 26 C -0.195 4.195 27 C 0.173 3.827 28 F -0.121 7.121 29 H 0.049 0.951 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.270 0.730 33 H 0.044 0.956 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.145 0.855 41 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.528 4.035 24.621 25.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.129 3.871 3 H 0.068 0.932 4 C -0.573 4.573 5 H 0.058 0.942 6 C -0.175 4.175 7 N -0.578 5.578 8 Si 0.770 3.230 9 H -0.180 1.180 10 H -0.174 1.174 11 H -0.223 1.223 12 N -0.286 5.286 13 C -0.065 4.065 14 C 0.278 3.722 15 O -0.422 6.422 16 C 0.309 3.691 17 O -0.372 6.372 18 N -0.252 5.252 19 C -0.017 4.017 20 C -0.111 4.111 21 C -0.177 4.177 22 C 0.087 3.913 23 C -0.209 4.209 24 C 0.133 3.867 25 F -0.107 7.107 26 C -0.216 4.216 27 C 0.153 3.847 28 F -0.100 7.100 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.125 0.875 35 H 0.097 0.903 36 H 0.111 0.889 37 H 0.118 0.882 38 H 0.136 0.864 39 H 0.139 0.861 40 H 0.163 0.837 41 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 3.491 3.956 24.247 24.814 hybrid contribution -0.243 -0.070 -0.861 0.898 sum 3.248 3.885 23.386 23.928 Atomic orbital electron populations 1.22365 0.95891 1.02624 1.00637 1.19243 0.92270 0.93877 0.81677 0.93162 1.21283 1.32359 1.13374 0.90265 0.94185 1.25698 0.97053 0.99768 0.95014 1.70010 1.46786 1.42248 0.98748 0.85929 0.79596 0.79767 0.77678 1.17951 1.17437 1.22312 1.47881 1.46403 1.13600 1.20764 1.22253 1.01150 0.79286 1.03814 1.19792 0.81048 0.86628 0.84744 1.90691 1.55800 1.18293 1.77379 1.20185 0.78522 0.86201 0.84203 1.90641 1.52763 1.15401 1.78425 1.45679 1.51312 1.16136 1.12063 1.22578 1.00920 0.78555 0.99613 1.21268 1.04031 0.94483 0.91277 1.20142 1.04272 0.98617 0.94661 1.17737 0.95432 0.93212 0.84879 1.20839 1.06896 0.97058 0.96134 1.16721 0.97999 0.80881 0.91122 1.91547 1.92595 1.40363 1.86178 1.21096 1.05084 0.91680 1.03703 1.16256 0.94370 0.86369 0.87719 1.91555 1.77579 1.63976 1.76856 0.93217 0.91216 0.91798 0.92091 0.93726 0.87480 0.90308 0.88881 0.88203 0.86398 0.86073 0.83733 0.80357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.11 8.66 71.98 0.62 -5.49 16 2 C 0.23 10.58 2.22 44.25 0.10 10.68 16 3 H 0.05 2.47 5.96 -2.39 -0.01 2.45 16 4 C -0.53 -29.44 8.95 25.60 0.23 -29.21 16 5 H 0.04 2.47 7.89 -2.91 -0.02 2.44 16 6 C 0.02 1.33 5.45 84.65 0.46 1.80 16 7 N -0.94 -56.76 13.96 21.44 0.30 -56.46 16 8 Si 0.94 42.66 24.37 68.60 1.67 44.33 16 9 H -0.25 -10.56 6.88 99.48 0.68 -9.88 16 10 H -0.25 -10.71 6.52 99.48 0.65 -10.06 16 11 H -0.30 -13.42 7.11 99.48 0.71 -12.71 16 12 N -0.56 -22.56 2.75 -828.49 -2.28 -24.84 16 13 C 0.08 2.72 8.75 127.77 1.12 3.84 16 14 C 0.50 18.80 7.69 87.24 0.67 19.47 16 15 O -0.54 -21.75 13.41 -3.26 -0.04 -21.80 16 16 C 0.52 16.91 7.73 87.24 0.67 17.59 16 17 O -0.50 -16.59 11.31 -3.33 -0.04 -16.63 16 18 N -0.53 -14.06 3.12 -631.17 -1.97 -16.03 16 19 C 0.10 2.19 5.67 86.63 0.49 2.68 16 20 C -0.07 -1.05 6.93 30.27 0.21 -0.84 16 21 C -0.17 -3.17 6.21 -19.57 -0.12 -3.29 16 22 C 0.18 4.32 6.62 38.33 0.25 4.57 16 23 C -0.19 -4.42 9.43 22.57 0.21 -4.20 16 24 C 0.15 3.00 7.28 22.29 0.16 3.16 16 25 F -0.13 -2.63 17.26 44.97 0.78 -1.85 16 26 C -0.20 -3.01 10.02 22.38 0.22 -2.79 16 27 C 0.17 2.82 7.29 22.35 0.16 2.98 16 28 F -0.12 -1.87 17.26 44.97 0.78 -1.09 16 29 H 0.05 1.98 3.28 -2.38 -0.01 1.97 16 30 H 0.07 2.55 6.67 -2.39 -0.02 2.53 16 31 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 33 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.11 3.40 5.36 -2.47 -0.01 3.39 16 35 H 0.08 2.67 6.44 -2.39 -0.02 2.66 16 36 H 0.09 2.09 7.75 -2.39 -0.02 2.07 16 37 H 0.10 2.12 7.51 -2.39 -0.02 2.10 16 38 H 0.12 1.27 8.14 -2.38 -0.02 1.25 16 39 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.14 3.84 6.28 -2.91 -0.02 3.83 16 41 H 0.18 1.79 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -65.91 338.93 5.69 -60.22 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 1.02 Total: 13.22 kcal Atomic # 6 Polarization: 15.47 SS G_CDS: 5.47 Total: 20.94 kcal Atomic # 7 Polarization: -93.38 SS G_CDS: -3.95 Total: -97.34 kcal Atomic # 8 Polarization: -38.35 SS G_CDS: -0.08 Total: -38.43 kcal Atomic # 9 Polarization: -4.50 SS G_CDS: 1.55 Total: -2.94 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 1.67 Total: 44.33 kcal Total: -65.91 5.69 -60.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190153311.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.447 kcal (2) G-P(sol) polarization free energy of solvation -65.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds