Wall clock time and date at job start Tue Mar 31 2020 20:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21288 * 119.99679 * 2 1 4 4 N 1.34776 * 120.00506 * 179.97438 * 2 1 3 5 5 C 1.46502 * 120.00128 * 184.99999 * 4 2 1 6 6 H 1.08993 * 109.46971 * 33.86186 * 5 4 2 7 7 C 1.53000 * 109.47080 * 153.86623 * 5 4 2 8 8 C 1.50696 * 109.46896 * 294.99703 * 7 5 4 9 9 O 1.21284 * 120.00275 * 0.02562 * 8 7 5 10 10 N 1.34775 * 120.00161 * 180.02562 * 8 7 5 11 11 C 1.46499 * 120.00161 * 180.02562 * 10 8 7 12 12 H 1.08993 * 109.47487 * 35.00320 * 11 10 8 13 13 C 1.53000 * 109.47153 * 274.99693 * 11 10 8 14 14 C 1.50701 * 109.47112 * 155.00121 * 11 10 8 15 15 H 1.08002 * 120.00055 * 359.97438 * 14 11 10 16 16 C 1.37880 * 120.00093 * 180.02562 * 14 11 10 17 17 N 1.31514 * 119.99789 * 359.97438 * 16 14 11 18 18 Si 1.86799 * 120.00134 * 180.02562 * 16 14 11 19 19 H 1.48505 * 109.47215 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47447 * 119.99615 * 18 16 14 21 21 H 1.48504 * 109.47161 * 239.99836 * 18 16 14 22 22 C 1.50699 * 109.46757 * 273.86336 * 5 4 2 23 23 C 1.38237 * 119.98654 * 134.13350 * 22 5 4 24 24 C 1.38215 * 120.01695 * 180.02562 * 23 22 5 25 25 C 1.38358 * 119.98341 * 0.25688 * 24 23 22 26 26 Cl 1.73603 * 120.01083 * 179.69952 * 25 24 23 27 27 C 1.38351 * 119.97394 * 359.46256 * 25 24 23 28 28 C 1.38218 * 119.98368 * 0.55759 * 27 25 24 29 29 H 1.08999 * 109.47353 * 239.99853 * 1 2 3 30 30 H 1.08999 * 109.47387 * 0.02562 * 1 2 3 31 31 H 1.09010 * 109.46827 * 120.00483 * 1 2 3 32 32 H 0.96997 * 119.99492 * 4.99513 * 4 2 1 33 33 H 1.08999 * 109.46966 * 54.99640 * 7 5 4 34 34 H 1.09001 * 109.46977 * 174.99824 * 7 5 4 35 35 H 0.97000 * 119.99793 * 359.97438 * 10 8 7 36 36 H 1.09003 * 109.47269 * 180.02562 * 13 11 10 37 37 H 1.09002 * 109.47344 * 300.00437 * 13 11 10 38 38 H 1.09004 * 109.46809 * 60.00251 * 13 11 10 39 39 H 0.97004 * 119.99822 * 180.02562 * 17 16 14 40 40 H 1.08002 * 119.99598 * 359.97438 * 23 22 5 41 41 H 1.08003 * 120.00970 * 179.97438 * 24 23 22 42 42 H 1.07998 * 120.01114 * 180.25478 * 27 25 24 43 43 H 1.07996 * 119.99277 * 179.71790 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6418 -1.1694 0.1111 6 1 3.9594 -0.3422 0.7457 7 6 4.1046 -2.4914 0.7267 8 6 3.5975 -2.5911 2.1423 9 8 2.9311 -1.6933 2.6124 10 7 3.8845 -3.6778 2.8860 11 6 3.3910 -3.7749 4.2620 12 1 2.4074 -3.3101 4.3289 13 6 4.3599 -3.0562 5.2031 14 6 3.2892 -5.2254 4.6579 15 1 3.5640 -5.9977 3.9548 16 6 2.8440 -5.5665 5.9175 17 7 2.5088 -4.6261 6.7735 18 14 2.7184 -7.3645 6.4085 19 1 3.1521 -8.2189 5.2740 20 1 3.5913 -7.6192 7.5825 21 1 1.3113 -7.6847 6.7591 22 6 4.2494 -1.0134 -1.2591 23 6 5.2851 -0.1196 -1.4579 24 6 5.8425 0.0243 -2.7145 25 6 5.3601 -0.7225 -3.7746 26 17 6.0545 -0.5365 -5.3548 27 6 4.3275 -1.6210 -3.5738 28 6 3.7706 -1.7638 -2.3168 29 1 -0.3634 -0.5138 0.8899 30 1 -0.3634 1.0276 -0.0005 31 1 -0.3633 -0.5140 -0.8900 32 1 1.6987 -2.0056 -0.0722 33 1 3.7117 -3.3223 0.1407 34 1 5.1939 -2.5303 0.7274 35 1 4.4171 -4.3959 2.5100 36 1 3.9930 -3.1289 6.2270 37 1 5.3436 -3.5211 5.1362 38 1 4.4336 -2.0071 4.9168 39 1 2.1960 -4.8661 7.6598 40 1 5.6583 0.4669 -0.6314 41 1 6.6514 0.7229 -2.8698 42 1 3.9532 -2.2072 -4.4000 43 1 2.9615 -2.4618 -2.1609 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194718802.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:15 Heat of formation + Delta-G solvation = -90.805710 kcal Electronic energy + Delta-G solvation = -26605.619365 eV Core-core repulsion = 22675.073930 eV Total energy + Delta-G solvation = -3930.545436 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.44088 -40.19300 -39.87003 -37.59117 -36.83546 -36.04932 -34.28646 -33.08491 -32.03602 -31.42114 -30.42475 -29.54291 -27.32390 -25.47967 -23.89115 -23.04305 -22.13224 -21.37696 -21.02573 -19.03173 -18.27396 -17.86511 -17.47937 -17.39333 -16.97054 -16.48047 -16.06751 -15.96027 -15.77521 -15.60558 -14.84951 -14.65493 -14.45394 -14.44180 -14.31861 -14.24569 -13.79740 -13.52491 -13.17388 -13.06446 -12.95660 -12.93083 -12.76660 -12.65562 -12.52882 -12.42015 -12.26446 -12.17232 -12.09629 -11.75866 -11.06665 -10.91748 -10.71650 -10.55503 -10.13555 -9.98994 -9.67852 -9.57335 -8.16066 -6.33152 0.09165 0.33284 1.14706 1.45248 1.46936 1.58230 1.72373 1.90282 2.30877 2.35849 2.57427 2.76110 3.14911 3.68584 3.72828 3.82557 3.96265 3.98054 4.16295 4.32835 4.39211 4.44860 4.53028 4.64015 4.67043 4.70525 4.78061 4.83761 4.93513 4.99489 5.08423 5.12945 5.22150 5.24574 5.42700 5.46610 5.62860 5.64906 5.72466 5.80251 5.93601 6.12801 6.61205 6.76489 7.03709 7.33690 7.35551 7.64197 8.90175 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.015093 B = 0.002514 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.688541 B =11134.956126 C =12093.594644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.509 3.491 3 O -0.598 6.598 4 N -0.704 5.704 5 C 0.208 3.792 6 H 0.067 0.933 7 C -0.132 4.132 8 C 0.496 3.504 9 O -0.590 6.590 10 N -0.706 5.706 11 C 0.273 3.727 12 H -0.001 1.001 13 C -0.135 4.135 14 C -0.542 4.542 15 H 0.076 0.924 16 C 0.012 3.988 17 N -0.919 5.919 18 Si 0.970 3.030 19 H -0.257 1.257 20 H -0.283 1.283 21 H -0.285 1.285 22 C -0.092 4.092 23 C -0.102 4.102 24 C -0.115 4.115 25 C -0.044 4.044 26 Cl -0.073 7.073 27 C -0.111 4.111 28 C -0.089 4.089 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.119 0.881 32 H 0.412 0.588 33 H 0.134 0.866 34 H 0.129 0.871 35 H 0.406 0.594 36 H 0.063 0.937 37 H 0.039 0.961 38 H 0.009 0.991 39 H 0.264 0.736 40 H 0.130 0.870 41 H 0.144 0.856 42 H 0.153 0.847 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.137 2.116 -22.935 23.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.298 3.702 3 O -0.479 6.479 4 N -0.355 5.355 5 C 0.102 3.898 6 H 0.085 0.915 7 C -0.172 4.172 8 C 0.283 3.717 9 O -0.471 6.471 10 N -0.355 5.355 11 C 0.170 3.830 12 H 0.017 0.983 13 C -0.194 4.194 14 C -0.580 4.580 15 H 0.094 0.906 16 C -0.187 4.187 17 N -0.558 5.558 18 Si 0.795 3.205 19 H -0.181 1.181 20 H -0.208 1.208 21 H -0.211 1.211 22 C -0.093 4.093 23 C -0.121 4.121 24 C -0.133 4.133 25 C -0.071 4.071 26 Cl -0.044 7.044 27 C -0.130 4.130 28 C -0.107 4.107 29 H 0.112 0.888 30 H 0.105 0.895 31 H 0.137 0.863 32 H 0.249 0.751 33 H 0.152 0.848 34 H 0.147 0.853 35 H 0.241 0.759 36 H 0.082 0.918 37 H 0.058 0.942 38 H 0.028 0.972 39 H 0.073 0.927 40 H 0.148 0.852 41 H 0.161 0.839 42 H 0.170 0.830 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 3.079 3.502 -22.520 22.997 hybrid contribution 0.014 -1.009 0.710 1.233 sum 3.093 2.493 -21.810 22.169 Atomic orbital electron populations 1.21909 0.89016 1.05764 1.05940 1.21388 0.92021 0.83033 0.73735 1.90664 1.72115 1.33168 1.51986 1.45802 1.06514 1.09210 1.73944 1.19295 0.80610 0.97841 0.92071 0.91512 1.22014 1.04929 0.98828 0.91416 1.21190 0.79994 0.81709 0.88822 1.90699 1.41558 1.40148 1.74714 1.46267 1.53813 1.20693 1.14762 1.18253 0.91875 0.95226 0.77685 0.98318 1.21915 0.98985 0.95935 1.02578 1.21593 1.45213 0.91747 0.99426 0.90623 1.25802 0.94505 1.02072 0.96362 1.70069 1.44440 1.34298 1.06966 0.85323 0.77428 0.79309 0.78424 1.18078 1.20847 1.21103 1.20224 0.96465 0.97125 0.95506 1.21133 0.96084 0.97638 0.97206 1.21166 1.00994 0.99820 0.91350 1.21117 0.98486 1.00752 0.86737 1.98369 1.83929 1.96941 1.25143 1.21270 0.95231 0.97934 0.98541 1.21111 0.99663 0.98963 0.90975 0.88825 0.89462 0.86303 0.75139 0.84829 0.85302 0.75916 0.91831 0.94187 0.97197 0.92705 0.85198 0.83850 0.82958 0.82933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.20 10.32 71.23 0.74 -2.47 16 2 C 0.51 14.31 7.90 87.66 0.69 15.00 16 3 O -0.60 -22.48 16.78 -3.06 -0.05 -22.53 16 4 N -0.70 -16.48 3.67 -446.10 -1.64 -18.11 16 5 C 0.21 5.03 1.71 44.24 0.08 5.11 16 6 H 0.07 2.17 7.23 -2.39 -0.02 2.16 16 7 C -0.13 -2.78 5.16 29.85 0.15 -2.63 16 8 C 0.50 16.96 7.66 87.66 0.67 17.64 16 9 O -0.59 -26.16 15.02 -3.04 -0.05 -26.20 16 10 N -0.71 -26.07 5.07 -446.11 -2.26 -28.33 16 11 C 0.27 13.43 2.56 44.25 0.11 13.55 16 12 H 0.00 -0.06 7.58 -2.39 -0.02 -0.08 16 13 C -0.14 -6.71 9.26 71.98 0.67 -6.04 16 14 C -0.54 -27.24 8.73 25.60 0.22 -27.02 16 15 H 0.08 3.51 7.74 -2.91 -0.02 3.49 16 16 C 0.01 0.65 5.30 84.66 0.45 1.09 16 17 N -0.92 -51.74 11.32 21.45 0.24 -51.49 16 18 Si 0.97 40.59 29.54 68.60 2.03 42.62 16 19 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 20 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 21 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 22 C -0.09 -1.86 4.92 -19.86 -0.10 -1.96 16 23 C -0.10 -2.13 9.67 22.26 0.22 -1.92 16 24 C -0.11 -2.14 9.83 22.29 0.22 -1.92 16 25 C -0.04 -0.79 6.32 22.33 0.14 -0.65 16 26 Cl -0.07 -1.20 28.96 -2.72 -0.08 -1.28 16 27 C -0.11 -1.72 9.83 22.29 0.22 -1.50 16 28 C -0.09 -1.40 9.28 22.27 0.21 -1.20 16 29 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.09 1.71 8.12 -2.39 -0.02 1.69 16 31 H 0.12 1.40 8.14 -2.38 -0.02 1.39 16 32 H 0.41 7.25 8.62 -92.71 -0.80 6.45 16 33 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.41 12.14 8.54 -92.71 -0.79 11.35 16 36 H 0.06 3.49 6.07 -2.39 -0.01 3.48 16 37 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 39 H 0.26 14.09 8.31 -92.71 -0.77 13.31 16 40 H 0.13 2.71 7.99 -2.91 -0.02 2.69 16 41 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 42 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 43 H 0.15 1.63 7.90 -2.91 -0.02 1.61 16 Total: -1.00 -74.74 383.18 2.34 -72.40 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: -0.54 Total: 27.85 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 4.68 Total: 5.08 kcal Atomic # 7 Polarization: -94.28 SS G_CDS: -3.66 Total: -97.94 kcal Atomic # 8 Polarization: -48.64 SS G_CDS: -0.10 Total: -48.73 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.62 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.08 Total: -1.28 kcal Total: -74.74 2.34 -72.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194718802.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.402 kcal (2) G-P(sol) polarization free energy of solvation -74.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds