Wall clock time and date at job start Tue Mar 31 2020 20:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46641 * 2 1 4 4 C 1.50697 * 109.46811 * 119.99346 * 2 1 3 5 5 H 1.08011 * 119.99571 * 120.00749 * 4 2 1 6 6 C 1.37871 * 120.00501 * 299.99850 * 4 2 1 7 7 N 1.31515 * 119.99867 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00050 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47374 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46939 * 120.00489 * 8 6 4 11 11 H 1.48503 * 109.47493 * 240.00132 * 8 6 4 12 12 N 1.46499 * 109.47070 * 239.99909 * 2 1 3 13 13 C 1.34777 * 120.00199 * 85.00207 * 12 2 1 14 14 O 1.21283 * 119.99750 * 359.97438 * 13 12 2 15 15 C 1.50702 * 119.99928 * 180.27479 * 13 12 2 16 16 H 1.08999 * 110.85551 * 55.93228 * 15 13 12 17 17 C 1.54627 * 110.96675 * 292.09891 * 15 13 12 18 18 C 1.51281 * 104.19446 * 217.08440 * 17 15 13 19 19 O 1.21298 * 124.94241 * 196.25395 * 18 17 15 20 20 N 1.34415 * 110.11705 * 16.25542 * 18 17 15 21 21 C 1.40144 * 124.35220 * 180.38933 * 20 18 17 22 22 C 1.38796 * 120.05060 * 269.74560 * 21 20 18 23 23 C 1.38147 * 119.97689 * 179.76672 * 22 21 20 24 24 C 1.38484 * 120.08471 * 0.52858 * 23 22 21 25 25 F 1.35098 * 119.94341 * 179.72265 * 24 23 22 26 26 C 1.38452 * 120.10692 * 359.70351 * 24 23 22 27 27 C 1.38311 * 120.02197 * 0.04037 * 26 24 23 28 28 F 1.35095 * 120.04275 * 180.02562 * 27 26 24 29 29 C 1.46758 * 111.29990 * 0.40488 * 20 18 17 30 30 H 1.09005 * 109.47473 * 60.00264 * 1 2 3 31 31 H 1.08998 * 109.46925 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47598 * 300.00373 * 1 2 3 33 33 H 0.96999 * 119.99893 * 179.97438 * 7 6 4 34 34 H 0.97000 * 119.99484 * 264.99304 * 12 2 1 35 35 H 1.09002 * 110.48865 * 335.76401 * 17 15 13 36 36 H 1.09008 * 110.48831 * 98.40762 * 17 15 13 37 37 H 1.07999 * 120.00920 * 0.02562 * 22 21 20 38 38 H 1.07993 * 119.95313 * 180.25629 * 23 22 21 39 39 H 1.07996 * 119.98632 * 180.02562 * 26 24 23 40 40 H 1.09004 * 110.24884 * 223.98670 * 29 20 18 41 41 H 1.09005 * 110.32205 * 102.02616 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0322 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9428 0.8299 2.6033 8 14 2.3213 -1.1201 4.0080 9 1 3.1463 -2.2868 3.6039 10 1 3.1465 -0.1870 4.8165 11 1 1.1660 -1.5864 4.8162 12 7 2.0183 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8582 1.1583 -2.4117 15 6 2.6435 -0.7303 -3.5891 16 1 2.0231 -1.5983 -3.8121 17 6 4.1278 -1.1351 -3.4339 18 6 4.7138 -0.9323 -4.8138 19 8 5.7699 -1.3918 -5.1944 20 7 3.8940 -0.1689 -5.5566 21 6 4.1438 0.1983 -6.8858 22 6 4.8363 1.3682 -7.1654 23 6 5.0858 1.7262 -8.4761 24 6 4.6364 0.9248 -9.5122 25 9 4.8772 1.2805 -10.7931 26 6 3.9411 -0.2405 -9.2375 27 6 3.6934 -0.6059 -7.9267 28 9 3.0154 -1.7431 -7.6582 29 6 2.7039 0.2311 -4.7967 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 0.7081 1.1611 3.4843 34 1 2.2491 -1.6318 -1.1525 35 1 4.6254 -0.4902 -2.7095 36 1 4.2090 -2.1801 -3.1347 37 1 5.1835 1.9963 -6.3583 38 1 5.6283 2.6345 -8.6930 39 1 3.5918 -0.8642 -10.0470 40 1 1.8099 0.1220 -5.4108 41 1 2.8020 1.2613 -4.4542 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194739041.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:33 Heat of formation + Delta-G solvation = -147.843191 kcal Electronic energy + Delta-G solvation = -28602.514379 eV Core-core repulsion = 24117.698932 eV Total energy + Delta-G solvation = -4484.815447 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.17256 -50.10472 -42.17327 -40.46367 -39.54070 -37.55903 -36.61845 -34.53292 -33.98341 -32.04863 -31.00952 -29.73440 -28.83688 -27.30159 -25.19661 -24.40449 -23.91730 -22.47728 -21.19000 -20.98163 -19.43121 -19.14618 -18.65793 -18.43794 -17.83637 -17.19873 -17.13555 -16.89058 -16.74530 -16.43131 -16.21591 -16.01455 -15.82205 -15.62102 -15.36495 -15.00215 -14.88677 -14.56910 -14.37477 -14.10501 -13.88639 -13.65462 -13.50358 -13.10205 -12.96563 -12.87033 -12.77191 -12.71222 -12.49390 -12.40300 -12.23582 -12.09278 -11.35287 -11.04684 -10.72463 -10.55480 -10.25176 -10.18536 -9.82581 -9.72405 -8.15145 -6.31354 -0.35961 -0.15578 1.26836 1.45861 1.48273 1.57912 1.59193 1.75388 2.10113 2.35465 2.56958 2.67653 3.12510 3.16057 3.19977 3.38472 3.47699 3.76251 3.79824 3.83882 3.99860 4.20878 4.23671 4.43251 4.57595 4.60164 4.72763 4.74660 4.81311 4.86280 4.87513 4.97404 4.98615 5.14875 5.27784 5.48225 5.62847 5.64274 5.73378 5.75316 5.93468 6.14478 6.77255 6.88488 6.96472 7.35639 7.55152 8.90985 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.026769 B = 0.002263 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.739836 B =12369.669027 C =12590.861045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.270 3.730 3 H 0.003 0.997 4 C -0.542 4.542 5 H 0.075 0.925 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.967 3.033 9 H -0.259 1.259 10 H -0.286 1.286 11 H -0.281 1.281 12 N -0.698 5.698 13 C 0.516 3.484 14 O -0.589 6.589 15 C -0.107 4.107 16 H 0.149 0.851 17 C -0.132 4.132 18 C 0.526 3.474 19 O -0.556 6.556 20 N -0.575 5.575 21 C 0.080 3.920 22 C -0.054 4.054 23 C -0.142 4.142 24 C 0.134 3.866 25 F -0.128 7.128 26 C -0.182 4.182 27 C 0.123 3.877 28 F -0.131 7.131 29 C 0.123 3.877 30 H 0.016 0.984 31 H 0.040 0.960 32 H 0.064 0.936 33 H 0.264 0.736 34 H 0.408 0.592 35 H 0.111 0.889 36 H 0.140 0.860 37 H 0.158 0.842 38 H 0.177 0.823 39 H 0.171 0.829 40 H 0.102 0.898 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.419 -2.654 -22.274 23.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.167 3.833 3 H 0.020 0.980 4 C -0.580 4.580 5 H 0.093 0.907 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.793 3.207 9 H -0.183 1.183 10 H -0.213 1.213 11 H -0.207 1.207 12 N -0.347 5.347 13 C 0.301 3.699 14 O -0.470 6.470 15 C -0.128 4.128 16 H 0.166 0.834 17 C -0.173 4.173 18 C 0.317 3.683 19 O -0.434 6.434 20 N -0.305 5.305 21 C -0.011 4.011 22 C -0.074 4.074 23 C -0.161 4.161 24 C 0.114 3.886 25 F -0.107 7.107 26 C -0.202 4.202 27 C 0.102 3.898 28 F -0.110 7.110 29 C 0.002 3.998 30 H 0.035 0.965 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.243 0.757 35 H 0.129 0.871 36 H 0.158 0.842 37 H 0.176 0.824 38 H 0.194 0.806 39 H 0.188 0.812 40 H 0.120 0.880 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.665 -1.983 -22.425 23.214 hybrid contribution -0.020 -0.613 0.901 1.090 sum 5.645 -2.596 -21.524 22.402 Atomic orbital electron populations 1.21909 0.98278 0.99548 0.99702 1.18350 0.91104 0.92045 0.81808 0.97959 1.21589 1.32247 1.13455 0.90734 0.90681 1.25742 0.95001 0.95588 1.02231 1.70050 1.37102 1.23976 1.24425 0.85365 0.78016 0.78588 0.78765 1.18320 1.21266 1.20723 1.46227 1.64546 1.14399 1.09492 1.20497 0.77596 0.86787 0.84980 1.90669 1.52848 1.17929 1.85575 1.22178 0.97853 1.00583 0.92212 0.83381 1.22324 0.93611 1.07246 0.94071 1.21330 0.82998 0.76132 0.87883 1.90723 1.23524 1.52002 1.77152 1.45635 1.23560 1.51527 1.09808 1.17724 1.04013 0.96684 0.82694 1.21321 0.94180 0.93998 0.97854 1.21393 1.02289 1.02117 0.90297 1.17401 0.97916 0.94028 0.79250 1.91556 1.92244 1.91423 1.35429 1.21116 1.03936 0.99120 0.96007 1.17724 0.95383 0.83724 0.93000 1.91516 1.77143 1.47660 1.94661 1.22126 0.87099 0.99425 0.91157 0.96489 0.94046 0.91761 0.92678 0.75686 0.87064 0.84228 0.82417 0.80600 0.81154 0.88018 0.89410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.40 9.26 71.98 0.67 -5.73 16 2 C 0.27 12.91 2.56 44.24 0.11 13.02 16 3 H 0.00 0.14 7.58 -2.38 -0.02 0.12 16 4 C -0.54 -26.92 8.73 25.60 0.22 -26.69 16 5 H 0.08 3.46 7.74 -2.91 -0.02 3.44 16 6 C 0.01 0.74 5.30 84.65 0.45 1.19 16 7 N -0.92 -50.77 11.32 21.45 0.24 -50.53 16 8 Si 0.97 40.60 29.54 68.60 2.03 42.63 16 9 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 10 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 12 N -0.70 -24.98 5.07 -446.09 -2.26 -27.24 16 13 C 0.52 16.99 7.02 87.66 0.62 17.61 16 14 O -0.59 -24.67 15.17 -3.04 -0.05 -24.72 16 15 C -0.11 -2.33 3.54 -10.48 -0.04 -2.37 16 16 H 0.15 2.36 8.14 -2.39 -0.02 2.34 16 17 C -0.13 -2.82 6.41 30.59 0.20 -2.62 16 18 C 0.53 13.72 7.99 87.90 0.70 14.42 16 19 O -0.56 -18.44 17.71 -3.08 -0.05 -18.50 16 20 N -0.57 -13.18 2.78 -627.40 -1.75 -14.92 16 21 C 0.08 1.69 5.39 38.14 0.21 1.90 16 22 C -0.05 -0.91 9.96 22.38 0.22 -0.69 16 23 C -0.14 -1.86 10.02 22.31 0.22 -1.63 16 24 C 0.13 1.97 7.30 22.38 0.16 2.14 16 25 F -0.13 -1.93 17.26 44.97 0.78 -1.15 16 26 C -0.18 -2.88 10.00 22.34 0.22 -2.66 16 27 C 0.12 2.49 7.31 22.48 0.16 2.65 16 28 F -0.13 -2.96 17.08 44.97 0.77 -2.19 16 29 C 0.12 2.68 6.65 86.83 0.58 3.25 16 30 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.04 1.78 8.14 -2.39 -0.02 1.77 16 32 H 0.06 3.39 6.07 -2.39 -0.01 3.38 16 33 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 34 H 0.41 11.84 8.54 -92.71 -0.79 11.05 16 35 H 0.11 2.56 7.89 -2.39 -0.02 2.54 16 36 H 0.14 2.31 8.14 -2.38 -0.02 2.29 16 37 H 0.16 2.30 8.06 -2.91 -0.02 2.27 16 38 H 0.18 1.31 8.06 -2.91 -0.02 1.29 16 39 H 0.17 2.00 8.06 -2.91 -0.02 1.97 16 40 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 41 H 0.09 2.20 6.96 -2.38 -0.02 2.18 16 Total: -1.00 -69.10 362.65 4.72 -64.39 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 0.30 Total: 18.44 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: 4.71 Total: 13.80 kcal Atomic # 7 Polarization: -88.93 SS G_CDS: -3.76 Total: -92.69 kcal Atomic # 8 Polarization: -43.12 SS G_CDS: -0.10 Total: -43.22 kcal Atomic # 9 Polarization: -4.89 SS G_CDS: 1.54 Total: -3.35 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.63 kcal Total: -69.10 4.72 -64.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194739041.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.454 kcal (2) G-P(sol) polarization free energy of solvation -69.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds