Wall clock time and date at job start Tue Mar 31 2020 20:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46633 * 2 1 4 4 C 1.50694 * 109.47256 * 239.99810 * 2 1 3 5 5 H 1.07996 * 120.00177 * 272.68483 * 4 2 1 6 6 C 1.37881 * 119.99777 * 92.68284 * 4 2 1 7 7 N 1.31520 * 120.00022 * 177.52057 * 6 4 2 8 8 Si 1.86804 * 120.00155 * 357.52463 * 6 4 2 9 9 H 1.48501 * 109.46977 * 84.78188 * 8 6 4 10 10 H 1.48492 * 109.47291 * 204.78239 * 8 6 4 11 11 H 1.48500 * 109.46649 * 324.78534 * 8 6 4 12 12 N 1.46499 * 109.47144 * 119.99757 * 2 1 3 13 13 C 1.46500 * 119.99686 * 60.00120 * 12 2 1 14 14 C 1.34777 * 120.00282 * 240.00661 * 12 2 1 15 15 O 1.21277 * 119.99501 * 4.32263 * 14 12 2 16 16 C 1.50696 * 120.00077 * 184.33157 * 14 12 2 17 17 H 1.08999 * 110.88864 * 306.65600 * 16 14 12 18 18 C 1.54742 * 110.97206 * 70.46798 * 16 14 12 19 19 C 1.51684 * 102.55139 * 93.88136 * 18 16 14 20 20 C 1.47490 * 125.86732 * 195.37388 * 19 18 16 21 21 C 1.39857 * 120.18369 * 269.99645 * 20 19 18 22 22 F 1.35095 * 120.09259 * 359.96118 * 21 20 19 23 23 C 1.38211 * 119.81382 * 180.22973 * 21 20 19 24 24 C 1.38316 * 120.18320 * 359.47580 * 23 21 20 25 25 C 1.38322 * 120.36817 * 0.55336 * 24 23 21 26 26 C 1.38204 * 120.18054 * 359.69974 * 25 24 23 27 27 F 1.35105 * 120.09090 * 179.97438 * 26 25 24 28 28 N 1.29148 * 108.26140 * 15.63926 * 19 18 16 29 29 O 1.41388 * 112.86138 * 359.91793 * 28 19 18 30 30 H 1.09004 * 109.46933 * 174.47951 * 1 2 3 31 31 H 1.09002 * 109.47733 * 294.47877 * 1 2 3 32 32 H 1.09000 * 109.47534 * 54.48313 * 1 2 3 33 33 H 0.96993 * 120.00015 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.47676 * 265.50795 * 13 12 2 35 35 H 1.09000 * 109.47692 * 25.50934 * 13 12 2 36 36 H 1.09003 * 109.46917 * 145.51157 * 13 12 2 37 37 H 1.08999 * 110.79155 * 335.61428 * 18 16 14 38 38 H 1.09003 * 110.95126 * 212.21906 * 18 16 14 39 39 H 1.07999 * 119.90491 * 179.72607 * 23 21 20 40 40 H 1.07994 * 119.81757 * 180.27162 * 24 23 21 41 41 H 1.07995 * 119.90757 * 179.71720 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1711 -1.7813 -1.2168 6 6 2.3149 0.0069 -2.3735 7 7 2.7994 -0.6060 -3.4315 8 14 2.0095 1.8492 -2.4196 9 1 3.1822 2.5597 -1.8494 10 1 1.8039 2.2819 -3.8251 11 1 0.7996 2.1705 -1.6206 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0931 1.4280 14 6 2.7931 -0.0355 2.0834 15 8 3.0215 1.1460 1.9327 16 6 3.3757 -0.7713 3.2625 17 1 2.5962 -1.2894 3.8211 18 6 4.4803 -1.7560 2.8101 19 6 5.7432 -0.9313 2.9711 20 6 7.0621 -1.2487 2.3924 21 6 7.9751 -2.0289 3.1091 22 9 7.6522 -2.4944 4.3356 23 6 9.2108 -2.3177 2.5616 24 6 9.5414 -1.8466 1.3038 25 6 8.6445 -1.0738 0.5885 26 6 7.4067 -0.7715 1.1237 27 9 6.5322 -0.0162 0.4237 28 7 5.4662 0.0935 3.7066 29 8 4.1137 0.1256 4.1171 30 1 -0.3633 -1.0229 -0.0989 31 1 -0.3635 0.4258 0.9353 32 1 -0.3634 0.5970 -0.8364 33 1 2.9985 -0.1013 -4.2355 34 1 0.7823 -2.1447 2.0663 35 1 1.4516 -2.5766 0.4746 36 1 2.4960 -2.6018 1.9158 37 1 4.3375 -2.0459 1.7691 38 1 4.5071 -2.6346 3.4547 39 1 9.9187 -2.9164 3.1156 40 1 10.5070 -2.0795 0.8798 41 1 8.9121 -0.7060 -0.3910 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279377539.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:44 Heat of formation + Delta-G solvation = -62.988599 kcal Electronic energy + Delta-G solvation = -30185.507911 eV Core-core repulsion = 25704.372035 eV Total energy + Delta-G solvation = -4481.135875 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.29880 -48.99737 -40.68184 -39.04274 -38.32662 -35.51365 -33.82475 -32.92135 -31.39845 -30.64327 -30.44881 -29.67181 -26.40004 -25.32929 -24.58328 -24.02663 -23.07049 -21.24788 -20.35266 -18.75382 -18.28332 -17.62822 -17.38364 -16.99762 -16.53611 -16.18131 -15.82128 -15.74730 -15.69780 -15.40336 -15.18669 -14.64041 -14.56120 -14.40312 -13.70949 -13.44133 -13.01453 -12.99495 -12.77765 -12.57302 -12.42214 -12.35613 -12.29281 -12.09850 -11.95837 -11.91140 -11.77988 -11.43724 -11.17728 -10.87153 -10.70780 -10.40839 -10.04952 -9.85303 -9.31386 -9.26671 -9.04561 -8.83828 -8.67078 -7.78695 -6.21447 -4.23823 0.48573 0.68268 1.55823 2.78473 2.96457 3.18852 3.29527 3.35773 3.42727 3.48891 3.60236 3.92074 4.11385 4.32451 4.35285 4.41288 4.46339 4.51710 4.73282 4.78675 5.06977 5.19223 5.20138 5.33509 5.45497 5.48695 5.52140 5.61804 5.68379 5.79431 5.82109 5.82928 6.17362 6.25894 6.35923 6.40000 6.52981 6.87870 6.99749 7.21311 7.40993 7.56354 8.01259 8.40877 8.75631 8.80205 9.41182 10.90154 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.012579 B = 0.004518 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.471930 B = 6196.212113 C = 7459.000606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.226 3.774 3 H 0.061 0.939 4 C -0.527 4.527 5 H 0.079 0.921 6 C 0.083 3.917 7 N -0.890 5.890 8 Si 0.869 3.131 9 H -0.271 1.271 10 H -0.286 1.286 11 H -0.261 1.261 12 N -0.583 5.583 13 C 0.074 3.926 14 C 0.490 3.510 15 O -0.529 6.529 16 C 0.027 3.973 17 H 0.138 0.862 18 C -0.135 4.135 19 C 0.118 3.882 20 C -0.107 4.107 21 C 0.157 3.843 22 F -0.124 7.124 23 C -0.168 4.168 24 C -0.047 4.047 25 C -0.163 4.163 26 C 0.167 3.833 27 F -0.107 7.107 28 N -0.250 5.250 29 O -0.163 6.163 30 H 0.050 0.950 31 H 0.026 0.974 32 H 0.057 0.943 33 H 0.267 0.733 34 H 0.047 0.953 35 H 0.088 0.912 36 H 0.055 0.945 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.935 -8.532 11.220 17.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.126 3.874 3 H 0.079 0.921 4 C -0.565 4.565 5 H 0.097 0.903 6 C -0.121 4.121 7 N -0.526 5.526 8 Si 0.695 3.305 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.186 1.186 12 N -0.316 5.316 13 C -0.070 4.070 14 C 0.274 3.726 15 O -0.405 6.405 16 C -0.035 4.035 17 H 0.155 0.845 18 C -0.174 4.174 19 C -0.076 4.076 20 C -0.110 4.110 21 C 0.136 3.864 22 F -0.102 7.102 23 C -0.187 4.187 24 C -0.065 4.065 25 C -0.182 4.182 26 C 0.146 3.854 27 F -0.085 7.085 28 N 0.013 4.987 29 O -0.182 6.182 30 H 0.069 0.931 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.107 0.893 36 H 0.074 0.926 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.166 0.834 40 H 0.166 0.834 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 11.300 -6.805 11.616 17.576 hybrid contribution -0.917 0.157 -0.533 1.073 sum 10.383 -6.648 11.083 16.578 Atomic orbital electron populations 1.22273 0.98233 1.00987 0.99310 1.19262 0.90805 0.94814 0.82566 0.92065 1.21072 1.45245 0.96033 0.94139 0.90312 1.24893 0.93454 0.98262 0.95499 1.69875 1.42648 1.36539 1.03567 0.87001 0.80200 0.86102 0.77163 1.19597 1.21213 1.18584 1.48252 1.48863 1.11730 1.22725 1.21792 0.99115 0.83005 1.03041 1.20496 0.80343 0.87938 0.83781 1.90699 1.59714 1.15278 1.74849 1.23719 0.96382 0.90220 0.93196 0.84499 1.23050 0.88288 0.99589 1.06514 1.23641 0.94252 0.93048 0.96634 1.17712 0.92523 1.05587 0.95208 1.17319 0.93036 0.95293 0.80705 1.91549 1.92939 1.86143 1.39569 1.21109 0.95447 1.04575 0.97590 1.20996 0.99342 0.93619 0.92590 1.21257 0.92284 1.02060 1.02627 1.17539 0.88196 0.91272 0.88394 1.91720 1.67547 1.72119 1.77135 1.78535 0.96203 1.14879 1.09117 1.91287 1.11713 1.64277 1.50969 0.93059 0.95442 0.92431 0.92358 0.93412 0.89333 0.92649 0.86440 0.86688 0.83391 0.83376 0.83078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 8.96 37.16 0.33 -2.80 16 2 C 0.23 5.42 2.21 -69.09 -0.15 5.27 16 3 H 0.06 1.65 4.53 -51.93 -0.24 1.42 16 4 C -0.53 -14.14 8.70 -34.44 -0.30 -14.44 16 5 H 0.08 2.20 6.89 -52.49 -0.36 1.84 16 6 C 0.08 2.35 5.47 -17.82 -0.10 2.25 16 7 N -0.89 -26.23 13.96 55.43 0.77 -25.46 16 8 Si 0.87 22.11 26.40 -169.99 -4.49 17.62 16 9 H -0.27 -7.18 7.11 56.52 0.40 -6.78 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 11 H -0.26 -6.37 6.13 56.52 0.35 -6.02 16 12 N -0.58 -11.94 2.75 -175.27 -0.48 -12.43 16 13 C 0.07 1.13 9.00 59.85 0.54 1.67 16 14 C 0.49 10.42 7.00 -10.99 -0.08 10.34 16 15 O -0.53 -13.80 15.92 -13.29 -0.21 -14.01 16 16 C 0.03 0.45 3.25 -26.97 -0.09 0.36 16 17 H 0.14 1.69 7.88 -51.93 -0.41 1.28 16 18 C -0.14 -1.92 5.37 -26.48 -0.14 -2.07 16 19 C 0.12 1.94 6.06 -79.47 -0.48 1.45 16 20 C -0.11 -1.52 5.85 -104.92 -0.61 -2.13 16 21 C 0.16 1.78 7.29 -38.99 -0.28 1.50 16 22 F -0.12 -1.46 16.83 2.25 0.04 -1.42 16 23 C -0.17 -1.36 10.01 -39.56 -0.40 -1.75 16 24 C -0.05 -0.35 10.03 -39.52 -0.40 -0.74 16 25 C -0.16 -1.67 10.01 -39.56 -0.40 -2.07 16 26 C 0.17 2.41 7.29 -38.99 -0.28 2.12 16 27 F -0.11 -2.04 16.83 2.25 0.04 -2.00 16 28 N -0.25 -4.76 12.54 35.27 0.44 -4.32 16 29 O -0.16 -3.13 11.82 -30.22 -0.36 -3.48 16 30 H 0.05 0.98 7.85 -51.93 -0.41 0.57 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 1.23 6.75 -51.93 -0.35 0.88 16 33 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.09 1.46 6.63 -51.93 -0.34 1.11 16 36 H 0.05 0.68 5.08 -51.93 -0.26 0.42 16 37 H 0.12 1.75 6.86 -51.93 -0.36 1.39 16 38 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.15 0.56 8.06 -52.49 -0.42 0.14 16 41 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 353.27 15.07 5.32 5.32 Total: -1.00 -36.06 353.27 -6.22 -42.28 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -4.46 Total: -1.06 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -2.84 Total: -1.04 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: 0.73 Total: -42.20 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -0.57 Total: -17.50 kcal Atomic # 9 Polarization: -3.50 SS G_CDS: 0.08 Total: -3.42 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.49 Total: 17.62 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.06 -6.22 -42.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279377539.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.712 kcal (2) G-P(sol) polarization free energy of solvation -36.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds