Wall clock time and date at job start Tue Mar 31 2020 20:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.46658 * 2 1 4 4 C 1.50698 * 109.47272 * 240.00041 * 2 1 3 5 5 H 1.08006 * 119.99803 * 240.00313 * 4 2 1 6 6 C 1.37877 * 119.99977 * 59.99455 * 4 2 1 7 7 N 1.31515 * 120.00109 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99730 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47184 * 90.00404 * 8 6 4 10 10 H 1.48501 * 109.47035 * 210.00386 * 8 6 4 11 11 H 1.48501 * 109.47201 * 330.00282 * 8 6 4 12 12 N 1.46496 * 109.46914 * 119.99457 * 2 1 3 13 13 C 1.46502 * 119.99771 * 60.00760 * 12 2 1 14 14 C 1.34779 * 120.00199 * 239.99902 * 12 2 1 15 15 O 1.21277 * 119.99664 * 0.02562 * 14 12 2 16 16 C 1.50702 * 119.99820 * 180.02562 * 14 12 2 17 17 H 1.08994 * 110.85929 * 52.66458 * 16 14 12 18 18 C 1.54733 * 111.00482 * 288.84212 * 16 14 12 19 19 C 1.51689 * 102.55645 * 266.10852 * 18 16 14 20 20 C 1.47484 * 125.87676 * 164.60010 * 19 18 16 21 21 C 1.39851 * 120.18089 * 89.72144 * 20 19 18 22 22 F 1.35099 * 120.09626 * 359.97438 * 21 20 19 23 23 C 1.38215 * 119.81378 * 179.72694 * 21 20 19 24 24 C 1.38313 * 120.18191 * 0.55389 * 23 21 20 25 25 C 1.38318 * 120.36747 * 359.72564 * 24 23 21 26 26 C 1.38200 * 120.18551 * 359.97438 * 25 24 23 27 27 F 1.35107 * 120.09511 * 179.97438 * 26 25 24 28 28 N 1.29155 * 108.25691 * 344.60205 * 19 18 16 29 29 O 1.41396 * 112.85927 * 359.67875 * 28 19 18 30 30 H 1.09001 * 109.47020 * 60.00393 * 1 2 3 31 31 H 1.08997 * 109.47102 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46915 * 299.99832 * 1 2 3 33 33 H 0.96997 * 119.99584 * 179.97438 * 7 6 4 34 34 H 1.09007 * 109.46921 * 269.99181 * 13 12 2 35 35 H 1.08996 * 109.47557 * 29.99590 * 13 12 2 36 36 H 1.09005 * 109.46934 * 149.99743 * 13 12 2 37 37 H 1.08999 * 110.79007 * 24.37457 * 18 16 14 38 38 H 1.08993 * 110.79409 * 147.65338 * 18 16 14 39 39 H 1.07998 * 119.90700 * 180.26012 * 23 21 20 40 40 H 1.07998 * 119.81443 * 179.74401 * 24 23 21 41 41 H 1.08001 * 119.90585 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 7 2.0183 -0.6905 1.1962 13 6 1.6645 -2.0931 1.4280 14 6 2.7932 -0.0355 2.0834 15 8 3.0858 1.1258 1.8916 16 6 3.2959 -0.7460 3.3136 17 1 3.7955 -1.6773 3.0470 18 6 2.1449 -1.0021 4.3155 19 6 2.2335 0.2017 5.2342 20 6 1.1913 0.6474 6.1778 21 6 1.1754 0.1611 7.4889 22 9 2.1152 -0.7199 7.8961 23 6 0.1986 0.5882 8.3685 24 6 -0.7682 1.4853 7.9519 25 6 -0.7631 1.9666 6.6552 26 6 0.2102 1.5545 5.7648 27 9 0.2132 2.0255 4.4985 28 7 3.3786 0.7693 5.0482 29 8 4.1695 0.1067 4.0813 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.7095 1.1616 -3.4844 34 1 0.7376 -2.1443 1.9994 35 1 1.5296 -2.5968 0.4709 36 1 2.4630 -2.5817 1.9865 37 1 1.1836 -1.0271 3.8022 38 1 2.3111 -1.9269 4.8677 39 1 0.1874 0.2168 9.3826 40 1 -1.5312 1.8119 8.6429 41 1 -1.5219 2.6666 6.3376 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279377548.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:46 Heat of formation + Delta-G solvation = -64.097582 kcal Electronic energy + Delta-G solvation = -29766.181164 eV Core-core repulsion = 25284.997200 eV Total energy + Delta-G solvation = -4481.183965 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.39173 -49.19801 -40.67465 -39.13241 -38.26327 -35.39643 -33.88332 -33.05570 -31.09516 -30.78206 -30.53655 -29.07971 -26.29001 -25.26503 -24.62838 -24.10254 -23.20577 -21.29793 -20.42808 -18.78285 -18.40420 -17.63976 -17.25675 -16.91368 -16.37209 -16.33199 -15.96487 -15.79381 -15.58069 -15.54622 -15.08593 -14.75497 -14.69204 -14.30636 -13.91086 -13.39249 -13.13883 -13.07177 -12.73952 -12.55541 -12.48732 -12.42548 -12.19825 -11.98885 -11.82689 -11.70986 -11.57281 -11.09630 -10.93882 -10.84704 -10.73635 -10.31600 -10.20086 -10.04142 -9.38736 -9.21685 -9.19028 -8.76893 -8.44960 -7.68932 -6.09952 -4.18480 0.35947 0.54225 1.50385 2.74346 2.87723 3.24201 3.26560 3.32351 3.34996 3.37031 3.65214 3.85928 3.97124 4.22126 4.33739 4.36320 4.40465 4.45886 4.64991 4.80062 5.02427 5.13186 5.21593 5.31533 5.35702 5.36806 5.45398 5.55008 5.60989 5.68578 5.70457 5.87953 6.26203 6.26302 6.70623 6.77744 7.00728 7.16933 7.34893 7.47505 7.67060 7.97221 8.14827 8.41533 8.77144 8.94048 9.47919 10.95444 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.019692 B = 0.003169 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.552230 B = 8834.333571 C = 9513.488715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.259 3.741 3 H 0.063 0.937 4 C -0.528 4.528 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.587 5.587 13 C 0.078 3.922 14 C 0.488 3.512 15 O -0.524 6.524 16 C 0.025 3.975 17 H 0.139 0.861 18 C -0.131 4.131 19 C 0.110 3.890 20 C -0.104 4.104 21 C 0.158 3.842 22 F -0.122 7.122 23 C -0.166 4.166 24 C -0.048 4.048 25 C -0.164 4.164 26 C 0.163 3.837 27 F -0.112 7.112 28 N -0.246 5.246 29 O -0.159 6.159 30 H 0.094 0.906 31 H 0.030 0.970 32 H 0.011 0.989 33 H 0.264 0.736 34 H 0.045 0.955 35 H 0.086 0.914 36 H 0.052 0.948 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.149 0.851 40 H 0.149 0.851 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.499 -4.912 22.631 24.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.159 3.841 3 H 0.081 0.919 4 C -0.567 4.567 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.320 5.320 13 C -0.066 4.066 14 C 0.272 3.728 15 O -0.401 6.401 16 C -0.037 4.037 17 H 0.156 0.844 18 C -0.171 4.171 19 C -0.084 4.084 20 C -0.107 4.107 21 C 0.137 3.863 22 F -0.101 7.101 23 C -0.185 4.185 24 C -0.066 4.066 25 C -0.183 4.183 26 C 0.142 3.858 27 F -0.090 7.090 28 N 0.017 4.983 29 O -0.180 6.180 30 H 0.113 0.887 31 H 0.049 0.951 32 H 0.030 0.970 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.105 0.895 36 H 0.071 0.929 37 H 0.129 0.871 38 H 0.132 0.868 39 H 0.167 0.833 40 H 0.167 0.833 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -5.455 -3.342 22.544 23.434 hybrid contribution -0.010 -1.397 -1.523 2.067 sum -5.466 -4.739 21.021 22.231 Atomic orbital electron populations 1.22078 0.98021 0.99380 1.00882 1.18975 0.90933 0.94558 0.79629 0.91903 1.21299 1.32023 1.13118 0.90237 0.92165 1.24896 0.94902 0.94949 0.98994 1.69880 1.36249 1.22463 1.23834 0.86477 0.79187 0.79283 0.82342 1.20590 1.21062 1.19897 1.48241 1.48738 1.11577 1.23427 1.21718 0.98636 0.83335 1.02880 1.20397 0.80311 0.87644 0.84406 1.90715 1.56997 1.16438 1.75913 1.23782 0.91985 0.95651 0.92314 0.84363 1.22980 1.01576 0.97791 0.94718 1.23631 0.93857 0.94573 0.96314 1.17723 0.97084 1.03252 0.92596 1.17346 0.88132 0.90093 0.90712 1.91562 1.62769 1.65423 1.90297 1.21141 0.95559 1.01188 1.00639 1.21000 0.97005 0.93704 0.94922 1.21228 0.99754 1.03585 0.93689 1.17506 0.94397 0.93360 0.80569 1.91678 1.95665 1.85957 1.35704 1.78527 1.03353 1.13210 1.03224 1.91315 1.25838 1.58378 1.42441 0.88739 0.95124 0.97038 0.92620 0.93659 0.89546 0.92926 0.87143 0.86766 0.83322 0.83344 0.83130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 8.97 37.16 0.33 -3.12 16 2 C 0.26 6.64 2.64 -69.08 -0.18 6.46 16 3 H 0.06 1.91 6.90 -51.93 -0.36 1.55 16 4 C -0.53 -14.23 7.99 -34.44 -0.28 -14.50 16 5 H 0.06 1.58 7.33 -52.48 -0.38 1.20 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.14 11.32 55.43 0.63 -24.52 16 8 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 N -0.59 -12.45 2.75 -175.26 -0.48 -12.93 16 13 C 0.08 1.23 8.33 59.85 0.50 1.73 16 14 C 0.49 10.63 7.02 -10.98 -0.08 10.55 16 15 O -0.52 -14.08 15.92 -13.28 -0.21 -14.30 16 16 C 0.03 0.42 3.23 -26.97 -0.09 0.33 16 17 H 0.14 1.83 7.06 -51.93 -0.37 1.46 16 18 C -0.13 -1.74 6.07 -26.48 -0.16 -1.90 16 19 C 0.11 1.68 6.06 -79.46 -0.48 1.20 16 20 C -0.10 -1.30 5.85 -104.92 -0.61 -1.91 16 21 C 0.16 1.58 7.29 -38.99 -0.28 1.29 16 22 F -0.12 -1.33 16.83 2.25 0.04 -1.29 16 23 C -0.17 -1.10 10.01 -39.56 -0.40 -1.50 16 24 C -0.05 -0.27 10.03 -39.52 -0.40 -0.67 16 25 C -0.16 -1.30 10.01 -39.57 -0.40 -1.70 16 26 C 0.16 1.96 7.29 -38.99 -0.28 1.68 16 27 F -0.11 -1.77 16.83 2.25 0.04 -1.74 16 28 N -0.25 -4.55 12.54 35.27 0.44 -4.10 16 29 O -0.16 -3.09 11.82 -30.21 -0.36 -3.45 16 30 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 31 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 32 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.04 0.61 7.54 -51.93 -0.39 0.22 16 35 H 0.09 1.45 7.02 -51.93 -0.36 1.09 16 36 H 0.05 0.65 6.25 -51.93 -0.32 0.32 16 37 H 0.11 1.43 6.72 -51.93 -0.35 1.08 16 38 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.15 0.59 8.06 -52.49 -0.42 0.17 16 40 H 0.15 0.32 8.06 -52.49 -0.42 -0.11 16 41 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 356.29 15.07 5.37 5.37 Total: -1.00 -35.46 356.29 -6.96 -42.42 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -4.50 Total: -1.08 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -2.90 Total: -0.38 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: 0.59 Total: -41.55 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.57 Total: -17.74 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.08 Total: -3.02 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.46 -6.96 -42.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279377548.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.679 kcal (2) G-P(sol) polarization free energy of solvation -35.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds