Wall clock time and date at job start Tue Mar 31 2020 20:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.46658 * 2 1 4 4 C 1.50698 * 109.47272 * 240.00041 * 2 1 3 5 5 H 1.08006 * 119.99803 * 240.00313 * 4 2 1 6 6 C 1.37877 * 119.99977 * 59.99455 * 4 2 1 7 7 N 1.31515 * 120.00109 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99730 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47184 * 90.00404 * 8 6 4 10 10 H 1.48501 * 109.47035 * 210.00386 * 8 6 4 11 11 H 1.48501 * 109.47201 * 330.00282 * 8 6 4 12 12 N 1.46496 * 109.46914 * 119.99457 * 2 1 3 13 13 C 1.46502 * 119.99771 * 60.00760 * 12 2 1 14 14 C 1.34779 * 120.00199 * 239.99902 * 12 2 1 15 15 O 1.21277 * 119.99664 * 0.02562 * 14 12 2 16 16 C 1.50702 * 119.99820 * 180.02562 * 14 12 2 17 17 H 1.08994 * 110.85929 * 52.66458 * 16 14 12 18 18 C 1.54733 * 111.00482 * 288.84212 * 16 14 12 19 19 C 1.51689 * 102.55645 * 266.10852 * 18 16 14 20 20 C 1.47484 * 125.87676 * 164.60010 * 19 18 16 21 21 C 1.39851 * 120.18089 * 89.72144 * 20 19 18 22 22 F 1.35099 * 120.09626 * 359.97438 * 21 20 19 23 23 C 1.38215 * 119.81378 * 179.72694 * 21 20 19 24 24 C 1.38313 * 120.18191 * 0.55389 * 23 21 20 25 25 C 1.38318 * 120.36747 * 359.72564 * 24 23 21 26 26 C 1.38200 * 120.18551 * 359.97438 * 25 24 23 27 27 F 1.35107 * 120.09511 * 179.97438 * 26 25 24 28 28 N 1.29155 * 108.25691 * 344.60205 * 19 18 16 29 29 O 1.41396 * 112.85927 * 359.67875 * 28 19 18 30 30 H 1.09001 * 109.47020 * 60.00393 * 1 2 3 31 31 H 1.08997 * 109.47102 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46915 * 299.99832 * 1 2 3 33 33 H 0.96997 * 119.99584 * 179.97438 * 7 6 4 34 34 H 1.09007 * 109.46921 * 269.99181 * 13 12 2 35 35 H 1.08996 * 109.47557 * 29.99590 * 13 12 2 36 36 H 1.09005 * 109.46934 * 149.99743 * 13 12 2 37 37 H 1.08999 * 110.79007 * 24.37457 * 18 16 14 38 38 H 1.08993 * 110.79409 * 147.65338 * 18 16 14 39 39 H 1.07998 * 119.90700 * 180.26012 * 23 21 20 40 40 H 1.07998 * 119.81443 * 179.74401 * 24 23 21 41 41 H 1.08001 * 119.90585 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 7 2.0183 -0.6905 1.1962 13 6 1.6645 -2.0931 1.4280 14 6 2.7932 -0.0355 2.0834 15 8 3.0858 1.1258 1.8916 16 6 3.2959 -0.7460 3.3136 17 1 3.7955 -1.6773 3.0470 18 6 2.1449 -1.0021 4.3155 19 6 2.2335 0.2017 5.2342 20 6 1.1913 0.6474 6.1778 21 6 1.1754 0.1611 7.4889 22 9 2.1152 -0.7199 7.8961 23 6 0.1986 0.5882 8.3685 24 6 -0.7682 1.4853 7.9519 25 6 -0.7631 1.9666 6.6552 26 6 0.2102 1.5545 5.7648 27 9 0.2132 2.0255 4.4985 28 7 3.3786 0.7693 5.0482 29 8 4.1695 0.1067 4.0813 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.7095 1.1616 -3.4844 34 1 0.7376 -2.1443 1.9994 35 1 1.5296 -2.5968 0.4709 36 1 2.4630 -2.5817 1.9865 37 1 1.1836 -1.0271 3.8022 38 1 2.3111 -1.9269 4.8677 39 1 0.1874 0.2168 9.3826 40 1 -1.5312 1.8119 8.6429 41 1 -1.5219 2.6666 6.3376 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279377548.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:46 Heat of formation + Delta-G solvation = -87.263087 kcal Electronic energy + Delta-G solvation = -29767.185696 eV Core-core repulsion = 25284.997200 eV Total energy + Delta-G solvation = -4482.188496 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.21035 -50.14055 -42.02440 -40.16474 -39.54715 -37.23600 -35.02205 -34.93744 -32.64265 -31.43709 -31.42791 -30.79659 -27.73815 -27.35005 -25.94483 -24.99482 -23.91067 -22.99925 -21.53681 -20.36222 -19.23675 -18.82695 -18.52884 -18.30485 -17.94439 -17.33861 -17.16187 -16.84517 -16.76689 -16.52519 -16.46568 -16.29593 -15.70908 -15.50811 -15.32410 -14.73403 -14.60317 -14.14197 -14.09686 -13.87414 -13.72445 -13.59853 -13.34218 -13.15213 -13.01283 -12.99529 -12.90195 -12.74499 -12.69649 -12.65233 -12.26155 -12.16469 -12.08121 -11.48971 -11.23927 -10.59252 -10.33264 -10.12451 -9.88208 -9.45269 -8.18172 -6.35535 -0.34719 -0.12282 0.35923 1.38223 1.41518 1.43731 1.51827 1.79852 2.09710 2.23095 2.41329 2.61503 2.79393 3.10024 3.15961 3.21829 3.28368 3.44234 3.70104 3.71356 3.89134 4.12764 4.20997 4.29674 4.37285 4.44760 4.65330 4.67681 4.70586 4.72164 4.83822 4.90703 4.98670 5.01124 5.01549 5.12966 5.42189 5.50054 5.60860 5.64365 5.94357 6.00517 6.10555 6.65415 6.72044 7.18849 7.38094 8.86690 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.019692 B = 0.003169 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.552230 B = 8834.333571 C = 9513.488715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.262 3.738 3 H -0.001 1.001 4 C -0.540 4.540 5 H 0.066 0.934 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.969 3.031 9 H -0.263 1.263 10 H -0.288 1.288 11 H -0.271 1.271 12 N -0.588 5.588 13 C 0.069 3.931 14 C 0.476 3.524 15 O -0.593 6.593 16 C 0.030 3.970 17 H 0.180 0.820 18 C -0.125 4.125 19 C 0.125 3.875 20 C -0.134 4.134 21 C 0.147 3.853 22 F -0.130 7.130 23 C -0.145 4.145 24 C -0.025 4.025 25 C -0.154 4.154 26 C 0.123 3.877 27 F -0.148 7.148 28 N -0.297 5.297 29 O -0.192 6.192 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.015 0.985 33 H 0.265 0.735 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.117 0.883 38 H 0.164 0.836 39 H 0.186 0.814 40 H 0.198 0.802 41 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.307 -7.775 25.448 27.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.161 3.839 3 H 0.017 0.983 4 C -0.579 4.579 5 H 0.084 0.916 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.793 3.207 9 H -0.188 1.188 10 H -0.214 1.214 11 H -0.195 1.195 12 N -0.320 5.320 13 C -0.073 4.073 14 C 0.263 3.737 15 O -0.474 6.474 16 C -0.031 4.031 17 H 0.196 0.804 18 C -0.163 4.163 19 C -0.068 4.068 20 C -0.137 4.137 21 C 0.127 3.873 22 F -0.109 7.109 23 C -0.164 4.164 24 C -0.043 4.043 25 C -0.173 4.173 26 C 0.103 3.897 27 F -0.127 7.127 28 N -0.038 5.038 29 O -0.209 6.209 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.034 0.966 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.113 0.887 37 H 0.135 0.865 38 H 0.182 0.818 39 H 0.203 0.797 40 H 0.215 0.785 41 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -7.267 -6.272 25.375 27.131 hybrid contribution 0.439 -0.451 -2.249 2.336 sum -6.828 -6.724 23.126 25.033 Atomic orbital electron populations 1.21839 0.96704 1.00393 0.99760 1.18554 0.91857 0.91921 0.81617 0.98254 1.21573 1.32129 1.13251 0.90923 0.91622 1.25787 0.95008 0.95606 1.02192 1.70038 1.37306 1.23860 1.24504 0.85401 0.78909 0.78227 0.78143 1.18815 1.21367 1.19524 1.48218 1.48195 1.13655 1.21902 1.22094 1.01690 0.79912 1.03586 1.21457 0.79360 0.87138 0.85755 1.90672 1.59443 1.19652 1.77682 1.23918 0.93424 0.95522 0.90273 0.80368 1.23135 1.00320 0.99052 0.93841 1.24330 0.93014 0.94026 0.95458 1.17888 0.97038 1.05161 0.93592 1.17566 0.89057 0.90518 0.90197 1.91542 1.63353 1.65760 1.90201 1.21636 0.93653 0.99707 1.01385 1.21583 0.96960 0.91582 0.94140 1.21589 0.98602 1.03109 0.93972 1.17986 0.96507 0.95077 0.80138 1.91587 1.96086 1.86746 1.38269 1.78532 1.05437 1.14936 1.04859 1.91271 1.27312 1.59248 1.43098 0.91403 0.92777 0.96585 0.92603 0.90706 0.90423 0.88718 0.86520 0.81838 0.79674 0.78471 0.81224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.30 8.97 71.98 0.65 -5.65 16 2 C 0.26 14.08 2.64 44.25 0.12 14.20 16 3 H 0.00 -0.04 6.90 -2.39 -0.02 -0.05 16 4 C -0.54 -29.73 7.99 25.60 0.20 -29.53 16 5 H 0.07 3.45 7.33 -2.91 -0.02 3.43 16 6 C 0.01 0.76 5.30 84.65 0.45 1.21 16 7 N -0.92 -54.00 11.32 21.45 0.24 -53.76 16 8 Si 0.97 43.43 29.54 68.60 2.03 45.46 16 9 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 10 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 11 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 12 N -0.59 -25.32 2.75 -826.78 -2.28 -27.60 16 13 C 0.07 2.00 8.33 127.77 1.06 3.07 16 14 C 0.48 21.53 7.02 87.66 0.62 22.14 16 15 O -0.59 -34.50 15.92 14.99 0.24 -34.26 16 16 C 0.03 1.00 3.23 30.44 0.10 1.10 16 17 H 0.18 4.24 7.06 -2.39 -0.02 4.23 16 18 C -0.12 -3.10 6.07 30.75 0.19 -2.91 16 19 C 0.12 3.85 6.06 45.71 0.28 4.13 16 20 C -0.13 -3.30 5.85 -20.06 -0.12 -3.41 16 21 C 0.15 2.61 7.29 22.65 0.17 2.77 16 22 F -0.13 -2.56 16.83 44.97 0.76 -1.81 16 23 C -0.15 -1.27 10.01 22.28 0.22 -1.04 16 24 C -0.03 -0.16 10.03 22.31 0.22 0.07 16 25 C -0.15 -2.08 10.01 22.28 0.22 -1.86 16 26 C 0.12 2.99 7.29 22.65 0.17 3.15 16 27 F -0.15 -5.05 16.83 44.97 0.76 -4.29 16 28 N -0.30 -11.51 12.54 -42.31 -0.53 -12.04 16 29 O -0.19 -7.71 11.82 -20.32 -0.24 -7.95 16 30 H 0.07 3.71 6.07 -2.39 -0.01 3.69 16 31 H 0.05 2.33 7.67 -2.39 -0.02 2.32 16 32 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 34 H 0.07 1.77 7.54 -2.38 -0.02 1.75 16 35 H 0.08 2.44 7.02 -2.39 -0.02 2.42 16 36 H 0.09 1.95 6.25 -2.38 -0.01 1.94 16 37 H 0.12 2.80 6.72 -2.39 -0.02 2.78 16 38 H 0.16 2.48 8.14 -2.39 -0.02 2.46 16 39 H 0.19 0.32 8.06 -2.91 -0.02 0.30 16 40 H 0.20 -0.58 8.06 -2.91 -0.02 -0.60 16 41 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 Total: -1.00 -88.31 356.29 6.60 -81.70 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: 1.09 Total: 7.10 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 4.54 Total: 7.43 kcal Atomic # 7 Polarization: -90.82 SS G_CDS: -2.56 Total: -93.39 kcal Atomic # 8 Polarization: -42.21 SS G_CDS: 0.00 Total: -42.21 kcal Atomic # 9 Polarization: -7.61 SS G_CDS: 1.51 Total: -6.10 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -88.31 6.60 -81.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279377548.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.560 kcal (2) G-P(sol) polarization free energy of solvation -88.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds