Wall clock time and date at job start Tue Mar 31 2020 20:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47262 * 2 1 4 4 C 1.50704 * 109.47132 * 120.00204 * 2 1 3 5 5 H 1.07995 * 120.00086 * 119.99415 * 4 2 1 6 6 C 1.37879 * 119.99618 * 299.99816 * 4 2 1 7 7 N 1.31510 * 120.00262 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99590 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46922 * 60.00209 * 8 6 4 10 10 H 1.48503 * 109.46775 * 179.97438 * 8 6 4 11 11 H 1.48491 * 109.47344 * 299.99932 * 8 6 4 12 12 N 1.46500 * 109.46800 * 240.00094 * 2 1 3 13 13 C 1.46501 * 119.99929 * 299.99881 * 12 2 1 14 14 S 1.65595 * 119.99964 * 120.00569 * 12 2 1 15 15 O 1.42106 * 106.40080 * 336.45340 * 14 12 2 16 16 O 1.42105 * 106.40088 * 203.53940 * 14 12 2 17 17 N 1.65596 * 107.22277 * 89.99559 * 14 12 2 18 18 C 1.46506 * 119.99677 * 65.00069 * 17 14 12 19 19 C 1.50699 * 109.46928 * 165.00101 * 18 17 14 20 20 C 1.35107 * 125.68805 * 94.99818 * 19 18 17 21 21 N 1.36836 * 107.18279 * 179.97438 * 20 19 18 22 22 C 1.36474 * 132.56914 * 180.02562 * 21 20 19 23 23 C 1.34956 * 120.60851 * 179.97438 * 22 21 20 24 24 C 1.40467 * 120.30120 * 0.02562 * 23 22 21 25 25 C 1.36021 * 119.69445 * 359.97438 * 24 23 22 26 26 C 1.37081 * 106.99589 * 0.02562 * 21 20 19 27 27 N 1.32562 * 108.03453 * 359.73559 * 26 21 20 28 28 H 1.09007 * 109.47017 * 300.00157 * 1 2 3 29 29 H 1.09003 * 109.47177 * 59.99683 * 1 2 3 30 30 H 1.08994 * 109.47262 * 180.02562 * 1 2 3 31 31 H 0.97004 * 119.99899 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.47491 * 270.00340 * 13 12 2 33 33 H 1.09001 * 109.47098 * 30.00114 * 13 12 2 34 34 H 1.09002 * 109.46922 * 150.00397 * 13 12 2 35 35 H 0.96996 * 120.00260 * 244.99648 * 17 14 12 36 36 H 1.09004 * 109.47073 * 284.99929 * 18 17 14 37 37 H 1.09000 * 109.47212 * 45.00012 * 18 17 14 38 38 H 1.08006 * 126.40610 * 359.97438 * 20 19 18 39 39 H 1.08002 * 119.70140 * 359.95397 * 22 21 20 40 40 H 1.08007 * 119.85282 * 180.02562 * 23 22 21 41 41 H 1.08005 * 120.15613 * 179.97438 * 24 23 22 42 42 H 1.07996 * 120.34148 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.8064 -1.1210 4.0081 10 1 1.8270 -0.4199 5.2204 11 1 1.8258 -2.5202 4.0077 12 7 2.0183 -0.6906 -1.1962 13 6 1.6643 -2.0932 -1.4280 14 16 2.9704 0.1141 -2.2862 15 8 2.6904 1.4973 -2.1192 16 8 2.8227 -0.5646 -3.5259 17 7 4.5437 -0.1043 -1.8180 18 6 5.1357 -1.4442 -1.8416 19 6 6.6348 -1.3330 -1.7352 20 6 7.3527 -1.4217 -0.5942 21 7 8.6697 -1.2684 -0.9322 22 6 9.8183 -1.2693 -0.1951 23 6 11.0167 -1.0929 -0.7900 24 6 11.0973 -0.9050 -2.1797 25 6 9.9603 -0.9019 -2.9263 26 6 8.7164 -1.0875 -2.2903 27 7 7.4753 -1.1358 -2.7536 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.7096 1.1618 3.4844 32 1 2.4156 -2.7378 -0.9717 33 1 0.6903 -2.3002 -0.9846 34 1 1.6237 -2.2852 -2.5002 35 1 5.0734 0.6549 -1.5283 36 1 4.7539 -2.0249 -1.0018 37 1 4.8735 -1.9409 -2.7758 38 1 6.9604 -1.5834 0.3991 39 1 9.7677 -1.4122 0.8742 40 1 11.9180 -1.0962 -0.1948 41 1 12.0577 -0.7636 -2.6533 42 1 10.0102 -0.7588 -3.9955 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282969562.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:10 Heat of formation + Delta-G solvation = 21.685792 kcal Electronic energy + Delta-G solvation = -27279.950855 eV Core-core repulsion = 23388.619874 eV Total energy + Delta-G solvation = -3891.330981 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.95616 -37.83711 -36.61635 -36.12652 -35.18162 -34.86534 -33.74171 -32.59480 -30.48661 -29.05650 -29.04022 -26.17256 -25.50926 -25.13106 -23.37279 -22.88067 -20.88566 -20.67902 -18.79208 -17.99668 -17.19785 -17.09113 -16.73394 -16.39388 -16.17166 -15.89468 -15.47452 -14.96473 -14.86850 -14.32764 -14.24450 -13.53991 -13.38784 -13.21683 -12.91730 -12.77935 -12.52054 -12.06475 -11.95351 -11.90752 -11.73097 -11.45413 -11.39069 -11.32932 -11.25138 -11.13989 -10.98899 -10.83442 -10.45792 -10.26514 -10.17986 -10.02033 -9.34705 -9.09902 -8.95144 -8.48785 -8.04859 -7.93728 -6.09521 -4.17912 0.48983 1.05053 1.31314 2.40266 2.63177 3.22302 3.28615 3.29344 3.30554 3.68007 3.95938 4.17949 4.23264 4.33899 4.48347 4.55992 4.79947 4.99371 5.10617 5.19377 5.20844 5.24472 5.52852 5.62279 5.68155 5.75146 5.80511 5.91167 6.09371 6.21560 6.24546 6.38317 6.45981 6.67617 6.86316 6.88144 6.89608 7.12072 7.28906 7.55948 7.64849 7.75748 7.79884 8.05506 8.26955 8.84877 9.48015 10.95552 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.011883 B = 0.003730 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.835502 B = 7504.010517 C = 9247.064344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.268 3.732 3 H 0.059 0.941 4 C -0.524 4.524 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.897 3.103 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.990 5.990 13 C 0.097 3.903 14 S 2.785 3.215 15 O -0.981 6.981 16 O -0.997 6.997 17 N -1.122 6.122 18 C 0.206 3.794 19 C 0.056 3.944 20 C -0.073 4.073 21 N -0.365 5.365 22 C 0.059 3.941 23 C -0.147 4.147 24 C -0.106 4.106 25 C -0.076 4.076 26 C 0.217 3.783 27 N -0.476 5.476 28 H 0.092 0.908 29 H 0.013 0.987 30 H 0.033 0.967 31 H 0.264 0.736 32 H 0.043 0.957 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.413 0.587 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.189 0.811 39 H 0.163 0.837 40 H 0.149 0.851 41 H 0.141 0.859 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.077 -6.083 -4.730 19.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.165 3.835 3 H 0.077 0.923 4 C -0.563 4.563 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.526 5.526 8 Si 0.725 3.275 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.833 5.833 13 C -0.049 4.049 14 S 2.794 3.206 15 O -0.965 6.965 16 O -0.980 6.980 17 N -0.880 5.880 18 C 0.078 3.922 19 C -0.077 4.077 20 C -0.206 4.206 21 N -0.037 5.037 22 C -0.063 4.063 23 C -0.168 4.168 24 C -0.130 4.130 25 C -0.096 4.096 26 C -0.027 4.027 27 N -0.196 5.196 28 H 0.111 0.889 29 H 0.032 0.968 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.246 0.754 36 H 0.102 0.898 37 H 0.109 0.891 38 H 0.206 0.794 39 H 0.180 0.820 40 H 0.167 0.833 41 H 0.159 0.841 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 17.269 -5.565 -6.190 19.171 hybrid contribution 0.996 -0.454 2.483 2.714 sum 18.265 -6.019 -3.707 19.586 Atomic orbital electron populations 1.22069 0.98065 0.99615 1.00828 1.18715 0.91816 0.92751 0.80209 0.92343 1.21349 1.31830 1.12995 0.90160 0.91979 1.24928 0.95042 0.94981 0.98942 1.69871 1.36255 1.22585 1.23855 0.86600 0.78964 0.79710 0.82263 1.20460 1.21315 1.20271 1.57692 1.64416 1.21433 1.39748 1.21299 1.01880 0.81774 0.99976 1.01723 0.72456 0.73154 0.73308 1.93595 1.83560 1.32440 1.86876 1.93534 1.85949 1.76355 1.42150 1.56014 1.32045 1.14431 1.85539 1.19406 0.85082 0.84475 1.03199 1.20789 0.96013 1.02564 0.88363 1.22655 0.80317 1.15579 1.02010 1.42857 1.06444 1.44901 1.09477 1.21659 0.84094 1.02512 0.98004 1.20799 0.96695 1.03629 0.95674 1.21017 0.98681 0.99825 0.93501 1.20292 0.87587 1.00694 1.01059 1.21023 0.95113 1.06191 0.80345 1.70683 0.97240 1.21367 1.30281 0.88911 0.96791 0.94800 0.92614 0.93886 0.90615 0.91940 0.75413 0.89757 0.89120 0.79359 0.81954 0.83304 0.84114 0.83216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 8.95 37.16 0.33 -3.13 16 2 C 0.27 6.48 2.62 -69.08 -0.18 6.30 16 3 H 0.06 1.58 6.91 -51.93 -0.36 1.22 16 4 C -0.52 -13.14 8.37 -34.44 -0.29 -13.43 16 5 H 0.06 1.49 7.65 -52.49 -0.40 1.09 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -24.18 11.32 55.43 0.63 -23.55 16 8 Si 0.90 19.93 29.54 -169.99 -5.02 14.91 16 9 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 10 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 12 N -0.99 -20.29 3.12 -115.85 -0.36 -20.65 16 13 C 0.10 1.69 9.90 59.85 0.59 2.28 16 14 S 2.79 55.83 6.14 -107.50 -0.66 55.17 16 15 O -0.98 -22.91 16.70 -57.17 -0.95 -23.86 16 16 O -1.00 -20.96 16.21 -57.17 -0.93 -21.89 16 17 N -1.12 -19.03 6.05 -11.65 -0.07 -19.10 16 18 C 0.21 3.08 6.77 -5.19 -0.04 3.05 16 19 C 0.06 0.83 6.45 -82.98 -0.54 0.30 16 20 C -0.07 -0.93 11.66 -16.43 -0.19 -1.12 16 21 N -0.36 -4.30 2.94 -62.66 -0.18 -4.49 16 22 C 0.06 0.49 10.95 -16.65 -0.18 0.31 16 23 C -0.15 -0.95 9.98 -39.91 -0.40 -1.34 16 24 C -0.11 -0.74 10.07 -39.54 -0.40 -1.14 16 25 C -0.08 -0.74 10.11 -39.36 -0.40 -1.14 16 26 C 0.22 2.88 7.81 -156.03 -1.22 1.66 16 27 N -0.48 -7.51 11.32 -9.00 -0.10 -7.61 16 28 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 29 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.03 0.74 6.66 -51.93 -0.35 0.39 16 31 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.08 1.32 6.43 -51.93 -0.33 0.98 16 34 H 0.06 1.00 7.02 -51.93 -0.36 0.64 16 35 H 0.41 6.69 8.64 -34.47 -0.30 6.39 16 36 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.09 1.37 7.75 -51.93 -0.40 0.96 16 38 H 0.19 1.98 8.06 -52.48 -0.42 1.55 16 39 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.15 0.48 8.06 -52.48 -0.42 0.06 16 41 H 0.14 0.55 8.06 -52.48 -0.42 0.13 16 42 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 363.77 15.07 5.48 5.48 Total: -1.00 -34.25 363.77 -10.51 -44.75 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -5.34 Total: 6.69 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -3.00 Total: -5.85 kcal Atomic # 7 Polarization: -75.31 SS G_CDS: -0.09 Total: -75.40 kcal Atomic # 8 Polarization: -43.87 SS G_CDS: -1.88 Total: -45.75 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Atomic # 16 Polarization: 55.83 SS G_CDS: -0.66 Total: 55.17 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.25 -10.51 -44.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282969562.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.440 kcal (2) G-P(sol) polarization free energy of solvation -34.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds