Wall clock time and date at job start Tue Mar 31 2020 20:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46929 * 2 1 4 4 N 1.46502 * 109.46672 * 240.00519 * 2 1 3 5 5 S 1.65598 * 120.00264 * 96.12828 * 4 2 1 6 6 O 1.42104 * 106.40087 * 176.20899 * 5 4 2 7 7 O 1.42097 * 106.40182 * 309.13018 * 5 4 2 8 8 N 1.65599 * 107.21702 * 62.67334 * 5 4 2 9 9 C 1.46504 * 119.99941 * 264.32928 * 8 5 4 10 10 C 1.46497 * 120.00179 * 84.32997 * 8 5 4 11 11 C 1.50704 * 109.47382 * 94.99670 * 10 8 5 12 12 H 1.08002 * 119.99471 * 4.79591 * 11 10 8 13 13 C 1.37871 * 120.00364 * 184.79170 * 11 10 8 14 14 N 1.31523 * 119.99737 * 5.23779 * 13 11 10 15 15 Si 1.86793 * 120.00169 * 185.23359 * 13 11 10 16 16 H 1.48508 * 109.47092 * 94.98678 * 15 13 11 17 17 H 1.48504 * 109.47608 * 214.98489 * 15 13 11 18 18 H 1.48498 * 109.47343 * 334.98852 * 15 13 11 19 19 C 1.50699 * 109.47638 * 120.00169 * 2 1 3 20 20 C 1.39688 * 119.13463 * 73.67148 * 19 2 1 21 21 C 1.35640 * 121.81191 * 180.02562 * 20 19 2 22 22 C 1.41149 * 119.59742 * 359.97438 * 21 20 19 23 23 N 1.32060 * 134.67862 * 179.97438 * 22 21 20 24 24 N 1.39965 * 108.95949 * 180.02562 * 23 22 21 25 25 H 0.96999 * 125.02163 * 180.02562 * 24 23 22 26 26 C 1.33984 * 109.95371 * 359.97438 * 24 23 22 27 27 C 1.38251 * 107.91136 * 0.02562 * 26 24 23 28 28 C 1.35653 * 119.13701 * 253.40411 * 19 2 1 29 29 H 1.09003 * 109.46709 * 299.99212 * 1 2 3 30 30 H 1.08994 * 109.47573 * 60.00089 * 1 2 3 31 31 H 1.09007 * 109.46872 * 180.02562 * 1 2 3 32 32 H 0.97005 * 119.99628 * 276.11934 * 4 2 1 33 33 H 1.08998 * 109.47146 * 90.00059 * 9 8 5 34 34 H 1.09004 * 109.47170 * 210.00297 * 9 8 5 35 35 H 1.09004 * 109.46654 * 330.00178 * 9 8 5 36 36 H 1.09005 * 109.47116 * 214.99480 * 10 8 5 37 37 H 1.08996 * 109.47243 * 334.99560 * 10 8 5 38 38 H 0.97000 * 119.99498 * 179.97438 * 14 13 11 39 39 H 1.07993 * 119.09250 * 359.97438 * 20 19 2 40 40 H 1.08001 * 120.19748 * 180.02562 * 21 20 19 41 41 H 1.07998 * 126.04474 * 179.97438 * 26 24 23 42 42 H 1.07995 * 120.23104 * 0.02562 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1963 5 16 2.4386 0.1796 -2.5411 6 8 2.9490 -0.7560 -3.4810 7 8 1.3442 1.0423 -2.8191 8 7 3.7073 1.1555 -2.1167 9 6 3.4615 2.5417 -1.7111 10 6 5.0755 0.6329 -2.1468 11 6 5.7172 0.9803 -3.4654 12 1 5.1903 1.6005 -4.1754 13 6 6.9767 0.5065 -3.7653 14 7 7.5760 -0.3314 -2.9477 15 14 7.8319 1.0544 -5.3330 16 1 8.7221 2.2052 -5.0349 17 1 8.6389 -0.0682 -5.8751 18 1 6.8149 1.4621 -6.3353 19 6 2.0325 -0.7104 1.2304 20 6 1.9358 -2.1022 1.2992 21 6 2.3703 -2.7966 2.3804 22 6 2.9380 -2.1041 3.4716 23 7 3.4424 -2.4630 4.6380 24 7 3.8642 -1.3175 5.3229 25 1 4.2709 -1.3136 6.2035 26 6 3.6242 -0.2274 4.5818 27 6 3.0402 -0.6382 3.3980 28 6 2.5718 0.0180 2.2397 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 2.0954 -1.6575 -1.2005 33 1 3.3064 2.5827 -0.6330 34 1 4.3211 3.1563 -1.9782 35 1 2.5739 2.9173 -2.2204 36 1 5.6517 1.0760 -1.3345 37 1 5.0534 -0.4503 -2.0278 38 1 8.4620 -0.6651 -3.1589 39 1 1.5025 -2.6402 0.4691 40 1 2.2832 -3.8727 2.4058 41 1 3.8467 0.7920 4.8604 42 1 2.6382 1.0929 2.1593 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352501994.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:41 Heat of formation + Delta-G solvation = 19.839120 kcal Electronic energy + Delta-G solvation = -27502.528236 eV Core-core repulsion = 23611.117178 eV Total energy + Delta-G solvation = -3891.411058 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.38468 -38.43857 -36.53421 -35.46995 -35.13624 -35.08801 -32.40147 -32.23349 -30.68647 -29.92742 -28.23174 -27.74196 -25.03363 -24.44703 -23.20974 -22.24540 -20.90632 -20.71040 -19.02226 -18.18762 -17.36580 -16.90827 -16.59964 -16.51528 -16.04133 -15.18640 -15.02962 -14.80161 -14.39516 -14.21281 -13.92811 -13.51135 -13.35792 -13.28519 -13.20663 -12.89159 -12.36112 -12.19550 -12.13411 -11.78389 -11.59433 -11.55465 -11.37093 -11.28240 -11.11632 -11.04184 -10.91723 -10.66757 -10.48810 -10.41084 -10.37027 -10.00884 -9.73766 -9.33099 -8.85280 -8.41015 -8.03141 -7.69082 -6.03221 -4.06457 0.49289 1.30116 1.70991 2.31721 2.52190 3.33048 3.40096 3.45250 3.53392 3.79995 4.09690 4.19732 4.46724 4.47639 4.72863 4.90015 4.99096 5.09701 5.14174 5.29102 5.32445 5.39553 5.46979 5.51373 5.56298 5.70876 5.86909 5.99251 5.99599 6.16351 6.23227 6.32300 6.35410 6.37878 6.57880 6.66382 6.77014 6.87356 7.16281 7.30803 7.42763 7.45912 7.65637 7.95095 8.24224 8.95800 9.58271 11.05389 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.011995 B = 0.003782 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.775755 B = 7400.913572 C = 8738.112251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.200 3.800 3 H 0.088 0.912 4 N -1.127 6.127 5 S 2.781 3.219 6 O -0.963 6.963 7 O -0.998 6.998 8 N -0.996 5.996 9 C 0.094 3.906 10 C 0.259 3.741 11 C -0.528 4.528 12 H 0.061 0.939 13 C 0.062 3.938 14 N -0.895 5.895 15 Si 0.896 3.104 16 H -0.281 1.281 17 H -0.285 1.285 18 H -0.272 1.272 19 C -0.118 4.118 20 C -0.058 4.058 21 C -0.105 4.105 22 C 0.107 3.893 23 N -0.311 5.311 24 N -0.429 5.429 25 H 0.442 0.558 26 C 0.084 3.916 27 C -0.203 4.203 28 C -0.031 4.031 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.411 0.589 33 H 0.037 0.963 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.030 0.970 37 H 0.040 0.960 38 H 0.263 0.737 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.188 0.812 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.488 1.429 17.156 20.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.093 3.907 3 H 0.106 0.894 4 N -0.885 5.885 5 S 2.788 3.212 6 O -0.947 6.947 7 O -0.982 6.982 8 N -0.839 5.839 9 C -0.053 4.053 10 C 0.137 3.863 11 C -0.568 4.568 12 H 0.079 0.921 13 C -0.140 4.140 14 N -0.534 5.534 15 Si 0.724 3.276 16 H -0.207 1.207 17 H -0.211 1.211 18 H -0.197 1.197 19 C -0.121 4.121 20 C -0.081 4.081 21 C -0.126 4.126 22 C -0.047 4.047 23 N -0.139 5.139 24 N -0.129 5.129 25 H 0.286 0.714 26 C -0.074 4.074 27 C -0.212 4.212 28 C -0.052 4.052 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.245 0.755 33 H 0.055 0.945 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.048 0.952 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.145 0.855 40 H 0.147 0.853 41 H 0.205 0.795 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.476 0.453 17.103 20.601 hybrid contribution 1.083 0.534 -0.386 1.267 sum -10.393 0.988 16.717 19.709 Atomic orbital electron populations 1.22316 0.94476 1.02792 1.02889 1.19495 0.94067 0.95018 0.82154 0.89401 1.56408 1.82194 1.19394 1.30504 1.01997 0.72829 0.73234 0.73121 1.93652 1.79760 1.63126 1.58163 1.93520 1.53453 1.67362 1.83826 1.57604 1.22001 1.20679 1.83601 1.21378 1.02526 0.83430 0.97926 1.19025 0.75284 0.94649 0.97334 1.21512 1.01018 1.31714 1.02551 0.92115 1.24930 0.97423 0.94583 0.97048 1.69939 1.15035 1.30966 1.37426 0.86513 0.79509 0.78204 0.83404 1.20714 1.21099 1.19691 1.19324 1.02788 0.93854 0.96101 1.20448 0.97119 0.93519 0.97035 1.19826 1.01966 0.99386 0.91467 1.20972 0.97469 0.93021 0.93236 1.77666 1.24159 1.04260 1.07825 1.46299 1.44867 1.04349 1.17360 0.71367 1.22705 0.99113 0.93498 0.92043 1.19573 1.11018 0.93696 0.96958 1.20066 0.95198 0.99137 0.90847 0.91701 0.90828 0.92059 0.75501 0.94466 0.90473 0.91462 0.95199 0.94182 0.92756 0.85517 0.85332 0.79472 0.85538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.79 9.44 37.16 0.35 -1.44 16 2 C 0.20 2.48 3.00 -69.08 -0.21 2.27 16 3 H 0.09 1.05 6.62 -51.93 -0.34 0.71 16 4 N -1.13 -16.74 5.49 -5.88 -0.03 -16.77 16 5 S 2.78 54.47 5.95 -107.50 -0.64 53.83 16 6 O -0.96 -23.26 17.32 -57.17 -0.99 -24.25 16 7 O -1.00 -19.95 16.08 -57.17 -0.92 -20.87 16 8 N -1.00 -20.30 3.23 -123.05 -0.40 -20.70 16 9 C 0.09 1.55 10.27 59.85 0.61 2.16 16 10 C 0.26 6.46 5.08 -5.19 -0.03 6.44 16 11 C -0.53 -14.88 9.38 -34.44 -0.32 -15.20 16 12 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 13 C 0.06 1.78 5.45 -17.82 -0.10 1.68 16 14 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 15 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 18 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 19 C -0.12 -1.41 4.91 -105.01 -0.52 -1.92 16 20 C -0.06 -0.68 8.77 -39.97 -0.35 -1.03 16 21 C -0.11 -1.29 10.08 -39.41 -0.40 -1.68 16 22 C 0.11 1.41 7.49 -83.05 -0.62 0.79 16 23 N -0.31 -3.98 12.70 33.25 0.42 -3.56 16 24 N -0.43 -3.68 7.18 30.84 0.22 -3.46 16 25 H 0.44 2.02 8.96 -182.70 -1.64 0.38 16 26 C 0.08 0.69 12.07 -16.61 -0.20 0.48 16 27 C -0.20 -2.34 6.33 -105.19 -0.67 -3.01 16 28 C -0.03 -0.35 9.66 -39.41 -0.38 -0.73 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.89 7.76 -51.93 -0.40 0.49 16 31 H 0.06 0.60 8.04 -51.93 -0.42 0.19 16 32 H 0.41 5.51 7.35 -34.47 -0.25 5.26 16 33 H 0.04 0.49 7.47 -51.93 -0.39 0.10 16 34 H 0.08 1.29 8.07 -51.93 -0.42 0.88 16 35 H 0.07 1.05 7.00 -51.93 -0.36 0.69 16 36 H 0.03 0.75 8.11 -51.93 -0.42 0.33 16 37 H 0.04 1.08 7.75 -51.93 -0.40 0.68 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.13 1.24 7.10 -52.49 -0.37 0.87 16 40 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 41 H 0.19 0.71 8.06 -52.49 -0.42 0.28 16 42 H 0.13 1.13 7.92 -52.49 -0.42 0.72 16 LS Contribution 366.60 15.07 5.52 5.52 Total: -1.00 -37.67 366.60 -10.57 -48.24 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -6.65 Total: 1.92 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -2.82 Total: -11.19 kcal Atomic # 7 Polarization: -71.06 SS G_CDS: 0.95 Total: -70.11 kcal Atomic # 8 Polarization: -43.21 SS G_CDS: -1.91 Total: -45.12 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 54.47 SS G_CDS: -0.64 Total: 53.83 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -37.67 -10.57 -48.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352501994.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.081 kcal (2) G-P(sol) polarization free energy of solvation -37.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds