Wall clock time and date at job start Tue Mar 31 2020 20:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46929 * 2 1 4 4 N 1.46502 * 109.46672 * 240.00519 * 2 1 3 5 5 S 1.65598 * 120.00264 * 96.12828 * 4 2 1 6 6 O 1.42104 * 106.40087 * 176.20899 * 5 4 2 7 7 O 1.42097 * 106.40182 * 309.13018 * 5 4 2 8 8 N 1.65599 * 107.21702 * 62.67334 * 5 4 2 9 9 C 1.46504 * 119.99941 * 264.32928 * 8 5 4 10 10 C 1.46497 * 120.00179 * 84.32997 * 8 5 4 11 11 C 1.50704 * 109.47382 * 94.99670 * 10 8 5 12 12 H 1.08002 * 119.99471 * 4.79591 * 11 10 8 13 13 C 1.37871 * 120.00364 * 184.79170 * 11 10 8 14 14 N 1.31523 * 119.99737 * 5.23779 * 13 11 10 15 15 Si 1.86793 * 120.00169 * 185.23359 * 13 11 10 16 16 H 1.48508 * 109.47092 * 94.98678 * 15 13 11 17 17 H 1.48504 * 109.47608 * 214.98489 * 15 13 11 18 18 H 1.48498 * 109.47343 * 334.98852 * 15 13 11 19 19 C 1.50699 * 109.47638 * 120.00169 * 2 1 3 20 20 C 1.39688 * 119.13463 * 73.67148 * 19 2 1 21 21 C 1.35640 * 121.81191 * 180.02562 * 20 19 2 22 22 C 1.41149 * 119.59742 * 359.97438 * 21 20 19 23 23 N 1.32060 * 134.67862 * 179.97438 * 22 21 20 24 24 N 1.39965 * 108.95949 * 180.02562 * 23 22 21 25 25 H 0.96999 * 125.02163 * 180.02562 * 24 23 22 26 26 C 1.33984 * 109.95371 * 359.97438 * 24 23 22 27 27 C 1.38251 * 107.91136 * 0.02562 * 26 24 23 28 28 C 1.35653 * 119.13701 * 253.40411 * 19 2 1 29 29 H 1.09003 * 109.46709 * 299.99212 * 1 2 3 30 30 H 1.08994 * 109.47573 * 60.00089 * 1 2 3 31 31 H 1.09007 * 109.46872 * 180.02562 * 1 2 3 32 32 H 0.97005 * 119.99628 * 276.11934 * 4 2 1 33 33 H 1.08998 * 109.47146 * 90.00059 * 9 8 5 34 34 H 1.09004 * 109.47170 * 210.00297 * 9 8 5 35 35 H 1.09004 * 109.46654 * 330.00178 * 9 8 5 36 36 H 1.09005 * 109.47116 * 214.99480 * 10 8 5 37 37 H 1.08996 * 109.47243 * 334.99560 * 10 8 5 38 38 H 0.97000 * 119.99498 * 179.97438 * 14 13 11 39 39 H 1.07993 * 119.09250 * 359.97438 * 20 19 2 40 40 H 1.08001 * 120.19748 * 180.02562 * 21 20 19 41 41 H 1.07998 * 126.04474 * 179.97438 * 26 24 23 42 42 H 1.07995 * 120.23104 * 0.02562 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1963 5 16 2.4386 0.1796 -2.5411 6 8 2.9490 -0.7560 -3.4810 7 8 1.3442 1.0423 -2.8191 8 7 3.7073 1.1555 -2.1167 9 6 3.4615 2.5417 -1.7111 10 6 5.0755 0.6329 -2.1468 11 6 5.7172 0.9803 -3.4654 12 1 5.1903 1.6005 -4.1754 13 6 6.9767 0.5065 -3.7653 14 7 7.5760 -0.3314 -2.9477 15 14 7.8319 1.0544 -5.3330 16 1 8.7221 2.2052 -5.0349 17 1 8.6389 -0.0682 -5.8751 18 1 6.8149 1.4621 -6.3353 19 6 2.0325 -0.7104 1.2304 20 6 1.9358 -2.1022 1.2992 21 6 2.3703 -2.7966 2.3804 22 6 2.9380 -2.1041 3.4716 23 7 3.4424 -2.4630 4.6380 24 7 3.8642 -1.3175 5.3229 25 1 4.2709 -1.3136 6.2035 26 6 3.6242 -0.2274 4.5818 27 6 3.0402 -0.6382 3.3980 28 6 2.5718 0.0180 2.2397 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 2.0954 -1.6575 -1.2005 33 1 3.3064 2.5827 -0.6330 34 1 4.3211 3.1563 -1.9782 35 1 2.5739 2.9173 -2.2204 36 1 5.6517 1.0760 -1.3345 37 1 5.0534 -0.4503 -2.0278 38 1 8.4620 -0.6651 -3.1589 39 1 1.5025 -2.6402 0.4691 40 1 2.2832 -3.8727 2.4058 41 1 3.8467 0.7920 4.8604 42 1 2.6382 1.0929 2.1593 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352501994.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:40 Heat of formation + Delta-G solvation = -9.086917 kcal Electronic energy + Delta-G solvation = -27503.782563 eV Core-core repulsion = 23611.117178 eV Total energy + Delta-G solvation = -3892.665385 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.15957 -39.34224 -38.17156 -37.16327 -36.77239 -36.14199 -34.47040 -33.08348 -31.52695 -30.91005 -29.61933 -29.05673 -26.72215 -25.26197 -24.21707 -24.04847 -21.76887 -21.55397 -20.37324 -19.12059 -18.83679 -18.37662 -18.23362 -17.68502 -17.35682 -16.80118 -16.20667 -15.81155 -15.72363 -15.25302 -15.01814 -14.91316 -14.75099 -14.33885 -14.10641 -14.03317 -13.85844 -13.68704 -13.44316 -13.25796 -13.03913 -12.99917 -12.88616 -12.62667 -12.48323 -12.43491 -12.35113 -12.28633 -11.97452 -11.88736 -11.70708 -11.24466 -11.20502 -10.57997 -10.50005 -9.74241 -9.65903 -8.52033 -8.17908 -6.28981 -0.32328 -0.18108 0.83980 1.40034 1.42450 1.52253 1.53287 1.91562 2.11119 2.42844 2.70831 2.90460 3.12806 3.30098 3.58467 3.80709 3.82284 4.03743 4.14710 4.27695 4.36380 4.44671 4.53036 4.61907 4.66578 4.71925 4.79531 4.88677 5.02128 5.11554 5.16386 5.23378 5.29756 5.39398 5.49587 5.51704 5.53699 5.73187 5.78126 5.92919 5.96230 6.12759 6.20831 6.32105 6.63489 6.79596 7.39647 8.89571 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.011995 B = 0.003782 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.775755 B = 7400.913572 C = 8738.112251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.197 3.803 3 H 0.096 0.904 4 N -1.115 6.115 5 S 2.796 3.204 6 O -1.016 7.016 7 O -1.002 7.002 8 N -1.002 6.002 9 C 0.085 3.915 10 C 0.276 3.724 11 C -0.548 4.548 12 H 0.053 0.947 13 C 0.012 3.988 14 N -0.925 5.925 15 Si 0.956 3.044 16 H -0.264 1.264 17 H -0.282 1.282 18 H -0.273 1.273 19 C -0.140 4.140 20 C -0.060 4.060 21 C -0.130 4.130 22 C 0.083 3.917 23 N -0.356 5.356 24 N -0.417 5.417 25 H 0.459 0.541 26 C 0.117 3.883 27 C -0.238 4.238 28 C -0.022 4.022 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.418 0.582 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.028 0.972 37 H 0.014 0.986 38 H 0.266 0.734 39 H 0.137 0.863 40 H 0.131 0.869 41 H 0.240 0.760 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.609 3.508 18.601 22.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.091 3.909 3 H 0.114 0.886 4 N -0.877 5.877 5 S 2.805 3.195 6 O -1.000 7.000 7 O -0.986 6.986 8 N -0.844 5.844 9 C -0.060 4.060 10 C 0.152 3.848 11 C -0.587 4.587 12 H 0.071 0.929 13 C -0.188 4.188 14 N -0.565 5.565 15 Si 0.781 3.219 16 H -0.189 1.189 17 H -0.208 1.208 18 H -0.198 1.198 19 C -0.143 4.143 20 C -0.082 4.082 21 C -0.151 4.151 22 C -0.070 4.070 23 N -0.185 5.185 24 N -0.118 5.118 25 H 0.307 0.693 26 C -0.042 4.042 27 C -0.247 4.247 28 C -0.042 4.042 29 H 0.106 0.894 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.253 0.747 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.046 0.954 37 H 0.032 0.968 38 H 0.075 0.925 39 H 0.154 0.846 40 H 0.149 0.851 41 H 0.256 0.744 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -11.608 2.542 18.573 22.049 hybrid contribution 1.085 -0.055 -0.660 1.271 sum -10.523 2.487 17.913 20.923 Atomic orbital electron populations 1.22294 0.93201 1.03415 1.03243 1.19736 0.95060 0.95106 0.81021 0.88609 1.56032 1.81717 1.19555 1.30404 1.01277 0.72417 0.72620 0.73229 1.93577 1.80678 1.64617 1.61117 1.93508 1.53139 1.67604 1.84321 1.57467 1.20249 1.22568 1.84131 1.21658 1.02613 0.81155 1.00615 1.18554 0.77299 0.93132 0.95837 1.21877 1.01536 1.31593 1.03728 0.92879 1.25745 0.98194 0.94614 1.00218 1.70036 1.15470 1.31875 1.39130 0.85580 0.78503 0.78290 0.79556 1.18941 1.20757 1.19751 1.19285 1.04699 0.93905 0.96377 1.20604 0.96689 0.93866 0.97071 1.19976 1.03225 0.99824 0.92046 1.21266 0.97752 0.94432 0.93540 1.77589 1.26094 1.06357 1.08452 1.46376 1.43780 1.03730 1.17918 0.69334 1.23510 0.95439 0.95105 0.90126 1.19953 1.13059 0.93097 0.98636 1.20387 0.93257 1.00400 0.90204 0.89449 0.92216 0.91441 0.74673 0.90449 0.91063 0.90585 0.95421 0.96819 0.92513 0.84564 0.85062 0.74390 0.82939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.21 9.44 71.98 0.68 -2.53 16 2 C 0.20 4.55 3.00 44.25 0.13 4.68 16 3 H 0.10 2.03 6.62 -2.39 -0.02 2.02 16 4 N -1.12 -32.61 5.49 -172.52 -0.95 -33.55 16 5 S 2.80 109.43 5.95 -56.49 -0.34 109.10 16 6 O -1.02 -50.39 17.32 -128.00 -2.22 -52.60 16 7 O -1.00 -39.24 16.08 -128.00 -2.06 -41.30 16 8 N -1.00 -40.37 3.23 -543.21 -1.75 -42.12 16 9 C 0.08 2.63 10.27 127.77 1.31 3.95 16 10 C 0.28 13.89 5.08 85.64 0.44 14.33 16 11 C -0.55 -31.14 9.38 25.60 0.24 -30.90 16 12 H 0.05 3.02 7.82 -2.91 -0.02 3.00 16 13 C 0.01 0.66 5.45 84.65 0.46 1.12 16 14 N -0.93 -54.99 13.29 21.45 0.28 -54.71 16 15 Si 0.96 44.89 29.54 68.60 2.03 46.92 16 16 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 17 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 18 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 19 C -0.14 -3.15 4.91 -20.11 -0.10 -3.24 16 20 C -0.06 -1.38 8.77 22.02 0.19 -1.19 16 21 C -0.13 -3.25 10.08 22.38 0.23 -3.02 16 22 C 0.08 2.17 7.49 42.16 0.32 2.49 16 23 N -0.36 -8.96 12.70 -48.70 -0.62 -9.58 16 24 N -0.42 -6.21 7.18 -56.34 -0.40 -6.62 16 25 H 0.46 3.04 8.96 -213.41 -1.91 1.12 16 26 C 0.12 1.50 12.07 84.37 1.02 2.52 16 27 C -0.24 -5.00 6.33 -20.23 -0.13 -5.13 16 28 C -0.02 -0.43 9.66 22.38 0.22 -0.22 16 29 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.06 1.35 7.76 -2.39 -0.02 1.33 16 31 H 0.07 1.23 8.04 -2.38 -0.02 1.21 16 32 H 0.42 11.27 7.35 -96.74 -0.71 10.56 16 33 H 0.08 1.77 7.47 -2.39 -0.02 1.75 16 34 H 0.07 2.29 8.07 -2.38 -0.02 2.27 16 35 H 0.08 2.23 7.00 -2.38 -0.02 2.21 16 36 H 0.03 1.39 8.11 -2.38 -0.02 1.37 16 37 H 0.01 0.76 7.75 -2.39 -0.02 0.74 16 38 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 39 H 0.14 2.69 7.10 -2.91 -0.02 2.67 16 40 H 0.13 2.97 8.06 -2.91 -0.02 2.94 16 41 H 0.24 0.40 8.06 -2.91 -0.02 0.37 16 42 H 0.15 2.12 7.92 -2.91 -0.02 2.10 16 Total: -1.00 -83.19 366.60 -2.57 -85.76 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -1.55 Total: 15.86 kcal Atomic # 6 Polarization: -22.14 SS G_CDS: 5.00 Total: -17.14 kcal Atomic # 7 Polarization: -143.15 SS G_CDS: -3.44 Total: -146.58 kcal Atomic # 8 Polarization: -89.63 SS G_CDS: -4.28 Total: -93.91 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Atomic # 16 Polarization: 109.43 SS G_CDS: -0.34 Total: 109.10 kcal Total: -83.19 -2.57 -85.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352501994.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.669 kcal (2) G-P(sol) polarization free energy of solvation -83.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds