Wall clock time and date at job start Tue Mar 31 2020 20:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46968 * 2 1 4 4 N 1.46494 * 109.47023 * 120.00562 * 2 1 3 5 5 S 1.65602 * 119.99912 * 264.99898 * 4 2 1 6 6 O 1.42095 * 104.27794 * 181.07424 * 5 4 2 7 7 O 1.42104 * 104.27620 * 308.93077 * 5 4 2 8 8 C 1.81397 * 104.45023 * 64.99925 * 5 4 2 9 9 C 1.53002 * 109.47297 * 179.97438 * 8 5 4 10 10 C 1.53000 * 109.47394 * 179.97438 * 9 8 5 11 11 C 1.50703 * 109.47160 * 180.02562 * 10 9 8 12 12 H 1.07997 * 119.99860 * 359.97438 * 11 10 9 13 13 C 1.37874 * 119.99756 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00210 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99865 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47022 * 90.00410 * 15 13 11 17 17 H 1.48498 * 109.47580 * 210.00173 * 15 13 11 18 18 H 1.48497 * 109.47339 * 330.00560 * 15 13 11 19 19 C 1.50696 * 109.47115 * 240.00522 * 2 1 3 20 20 N 1.30810 * 126.24556 * 285.02637 * 19 2 1 21 21 N 1.28684 * 110.28940 * 179.97438 * 20 19 2 22 22 C 1.32303 * 109.48335 * 0.02562 * 21 20 19 23 23 C 1.40823 * 133.46587 * 180.02562 * 22 21 20 24 24 C 1.36019 * 119.22601 * 179.97438 * 23 22 21 25 25 C 1.40548 * 119.74773 * 359.97438 * 24 23 22 26 26 C 1.34952 * 120.36596 * 359.97438 * 25 24 23 27 27 N 1.36061 * 126.25100 * 104.99547 * 19 2 1 28 28 H 1.08999 * 109.47430 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47068 * 299.99740 * 1 2 3 30 30 H 1.09000 * 109.47392 * 59.99522 * 1 2 3 31 31 H 0.97001 * 120.00462 * 84.99540 * 4 2 1 32 32 H 1.09005 * 109.47434 * 300.00018 * 8 5 4 33 33 H 1.08998 * 109.47136 * 59.99918 * 8 5 4 34 34 H 1.08999 * 109.47302 * 300.00609 * 9 8 5 35 35 H 1.09007 * 109.47104 * 60.00214 * 9 8 5 36 36 H 1.09003 * 109.46945 * 300.00739 * 10 9 8 37 37 H 1.08998 * 109.47079 * 59.99969 * 10 9 8 38 38 H 0.97007 * 120.00401 * 180.02562 * 14 13 11 39 39 H 1.07997 * 120.38847 * 359.97438 * 23 22 21 40 40 H 1.07997 * 120.12778 * 179.97438 * 24 23 22 41 41 H 1.08003 * 119.81734 * 179.97438 * 25 24 23 42 42 H 1.08002 * 119.74253 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 16 2.4122 0.1770 2.5505 6 8 2.8606 -0.8031 3.4764 7 8 3.2874 1.1905 2.0751 8 6 0.8408 0.8987 3.0985 9 6 1.0751 1.7337 4.3590 10 6 -0.2502 2.3430 4.8209 11 6 -0.0192 3.1660 6.0621 12 1 0.9735 3.2460 6.4799 13 6 -1.0751 3.8166 6.6641 14 7 -2.2840 3.7187 6.1556 15 14 -0.7890 4.8361 8.2030 16 1 -0.4700 6.2345 7.8181 17 1 -2.0142 4.8209 9.0419 18 1 0.3448 4.2637 8.9723 19 6 2.0323 -0.7103 -1.2305 20 7 2.0323 -2.0028 -1.4316 21 7 2.5306 -2.2748 -2.5864 22 6 2.8807 -1.1515 -3.1916 23 6 3.4609 -0.8651 -4.4424 24 6 3.7032 0.4297 -4.7812 25 6 3.3726 1.4591 -3.8832 26 6 2.8162 1.1696 -2.6884 27 7 2.5682 -0.1242 -2.3353 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 2.1109 -1.6563 1.1948 32 1 0.4386 1.5352 2.3102 33 1 0.1315 0.1008 3.3184 34 1 1.4770 1.0970 5.1471 35 1 1.7845 2.5318 4.1395 36 1 -0.6516 2.9798 4.0325 37 1 -0.9599 1.5454 5.0402 38 1 -3.0269 4.1768 6.5790 39 1 3.7104 -1.6642 -5.1247 40 1 4.1480 0.6659 -5.7366 41 1 3.5650 2.4876 -4.1509 42 1 2.5657 1.9686 -2.0062 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000447195451.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:19 Heat of formation + Delta-G solvation = 24.579991 kcal Electronic energy + Delta-G solvation = -26540.582385 eV Core-core repulsion = 22649.376906 eV Total energy + Delta-G solvation = -3891.205479 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.93674 -38.65243 -37.23803 -36.71065 -35.85368 -34.74795 -34.25812 -32.25037 -31.59331 -30.50393 -29.12762 -27.85390 -24.68939 -24.64216 -23.71235 -23.66432 -21.44267 -20.71590 -19.45066 -18.63590 -17.81620 -17.46036 -16.99616 -16.81442 -16.49128 -16.08009 -15.82146 -15.40012 -15.18476 -14.62210 -14.52313 -14.25249 -13.87074 -13.12175 -13.06042 -12.90334 -12.63360 -12.53134 -12.32760 -12.04999 -12.01862 -11.95418 -11.90290 -11.87473 -11.71740 -11.60355 -11.29433 -10.95041 -10.88878 -10.87352 -10.49490 -10.05313 -10.00080 -9.94780 -9.40744 -9.15455 -8.51001 -8.44259 -6.09297 -4.12402 0.15838 0.29352 0.66090 1.82090 2.27148 2.73631 2.89228 3.27906 3.34443 3.38448 3.50485 3.82821 3.84579 3.99609 4.22925 4.27935 4.28804 4.39416 4.42846 4.53844 4.68913 4.90265 5.03535 5.04673 5.16290 5.20952 5.27339 5.36626 5.39341 5.57731 5.59044 5.67925 5.77332 5.85245 5.93979 6.20407 6.38180 6.40471 6.77140 6.81999 7.52371 7.62032 7.88526 8.16864 8.28759 8.93791 9.52587 11.01835 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.021204 B = 0.002369 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.196361 B =11815.297531 C =12196.599637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.244 3.756 3 H 0.107 0.893 4 N -1.113 6.113 5 S 2.597 3.403 6 O -0.954 6.954 7 O -0.963 6.963 8 C -0.609 4.609 9 C -0.106 4.106 10 C 0.031 3.969 11 C -0.527 4.527 12 H 0.058 0.942 13 C 0.058 3.942 14 N -0.895 5.895 15 Si 0.894 3.106 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.273 1.273 19 C 0.142 3.858 20 N -0.234 5.234 21 N -0.287 5.287 22 C 0.192 3.808 23 C -0.080 4.080 24 C -0.086 4.086 25 C -0.136 4.136 26 C 0.066 3.934 27 N -0.385 5.385 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.425 0.575 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.021 0.979 37 H 0.022 0.978 38 H 0.262 0.738 39 H 0.158 0.842 40 H 0.149 0.851 41 H 0.159 0.841 42 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.665 -5.092 -24.414 26.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.133 3.867 3 H 0.125 0.875 4 N -0.871 5.871 5 S 2.693 3.307 6 O -0.944 6.944 7 O -0.953 6.953 8 C -0.741 4.741 9 C -0.145 4.145 10 C -0.007 4.007 11 C -0.565 4.565 12 H 0.076 0.924 13 C -0.144 4.144 14 N -0.534 5.534 15 Si 0.722 3.278 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.197 1.197 19 C -0.122 4.122 20 N -0.074 5.074 21 N -0.133 5.133 22 C -0.056 4.056 23 C -0.101 4.101 24 C -0.111 4.111 25 C -0.157 4.157 26 C -0.056 4.056 27 N -0.064 5.064 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.261 0.739 32 H 0.147 0.853 33 H 0.153 0.847 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.039 0.961 37 H 0.040 0.960 38 H 0.071 0.929 39 H 0.175 0.825 40 H 0.167 0.833 41 H 0.176 0.824 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 9.087 -6.403 -23.638 26.121 hybrid contribution -0.416 1.602 0.396 1.702 sum 8.671 -4.801 -23.242 25.267 Atomic orbital electron populations 1.22505 0.92281 1.04871 1.03958 1.18881 0.94736 0.94515 0.78532 0.87502 1.55842 1.84147 1.20765 1.26337 1.05492 0.77777 0.74444 0.72968 1.93601 1.79989 1.58942 1.61899 1.93562 1.61945 1.60361 1.79412 1.30670 1.20721 1.12369 1.10356 1.21523 1.03705 0.97681 0.91634 1.19064 0.89745 0.95674 0.96252 1.21244 0.94638 1.29961 1.10653 0.92368 1.25014 0.95125 0.96624 0.97599 1.69951 0.99526 1.43418 1.40503 0.86556 0.77752 0.80540 0.82968 1.20580 1.21162 1.19738 1.24755 1.05469 0.90681 0.91260 1.74144 1.13813 1.09932 1.09495 1.75006 1.16981 1.19812 1.01534 1.22403 1.03622 0.84714 0.94908 1.20310 0.99233 0.98337 0.92245 1.21233 0.97977 0.91580 1.00292 1.21002 1.00433 1.01608 0.92688 1.21828 1.00632 0.84299 0.98875 1.43666 1.40141 1.08077 1.14559 0.90158 0.89718 0.90950 0.73943 0.85325 0.84745 0.91438 0.91534 0.96111 0.96014 0.92874 0.82484 0.83344 0.82370 0.80871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.49 9.46 37.16 0.35 -1.14 16 2 C 0.24 2.46 3.28 -69.09 -0.23 2.24 16 3 H 0.11 0.91 7.05 -51.93 -0.37 0.55 16 4 N -1.11 -12.82 5.35 -5.89 -0.03 -12.85 16 5 S 2.60 36.94 5.44 -107.50 -0.58 36.36 16 6 O -0.95 -16.75 18.08 -57.54 -1.04 -17.79 16 7 O -0.96 -15.91 17.39 -57.54 -1.00 -16.91 16 8 C -0.61 -8.60 5.22 37.16 0.19 -8.41 16 9 C -0.11 -2.04 5.16 -26.73 -0.14 -2.17 16 10 C 0.03 0.75 4.97 -27.88 -0.14 0.62 16 11 C -0.53 -14.47 9.11 -34.44 -0.31 -14.78 16 12 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.89 -26.04 13.29 55.43 0.74 -25.31 16 15 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 C 0.14 1.67 6.96 -154.22 -1.07 0.59 16 20 N -0.23 -3.25 11.95 32.94 0.39 -2.86 16 21 N -0.29 -3.99 12.31 31.14 0.38 -3.61 16 22 C 0.19 2.11 7.92 -156.06 -1.24 0.88 16 23 C -0.08 -0.55 10.11 -39.40 -0.40 -0.95 16 24 C -0.09 -0.38 10.07 -39.51 -0.40 -0.78 16 25 C -0.14 -0.60 9.98 -39.88 -0.40 -1.00 16 26 C 0.07 0.44 10.80 -16.69 -0.18 0.26 16 27 N -0.38 -3.91 2.95 -59.73 -0.18 -4.09 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.08 0.66 5.78 -51.93 -0.30 0.36 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.43 4.76 8.59 -34.47 -0.30 4.46 16 32 H 0.13 1.50 6.77 -51.92 -0.35 1.15 16 33 H 0.13 1.68 8.14 -51.92 -0.42 1.26 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 39 H 0.16 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.15 0.18 8.06 -52.49 -0.42 -0.24 16 41 H 0.16 0.20 8.06 -52.48 -0.42 -0.22 16 42 H 0.17 0.72 7.76 -52.49 -0.41 0.32 16 LS Contribution 369.28 15.07 5.56 5.56 Total: -1.00 -38.27 369.28 -10.32 -48.59 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -5.49 Total: -0.20 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: -4.05 Total: -23.12 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: 1.31 Total: -48.71 kcal Atomic # 8 Polarization: -32.66 SS G_CDS: -2.04 Total: -34.70 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 36.94 SS G_CDS: -0.58 Total: 36.36 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -38.27 -10.32 -48.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447195451.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.169 kcal (2) G-P(sol) polarization free energy of solvation -38.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds