Wall clock time and date at job start Tue Mar 31 2020 20:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46968 * 2 1 4 4 N 1.46494 * 109.47023 * 120.00562 * 2 1 3 5 5 S 1.65602 * 119.99912 * 264.99898 * 4 2 1 6 6 O 1.42095 * 104.27794 * 181.07424 * 5 4 2 7 7 O 1.42104 * 104.27620 * 308.93077 * 5 4 2 8 8 C 1.81397 * 104.45023 * 64.99925 * 5 4 2 9 9 C 1.53002 * 109.47297 * 179.97438 * 8 5 4 10 10 C 1.53000 * 109.47394 * 179.97438 * 9 8 5 11 11 C 1.50703 * 109.47160 * 180.02562 * 10 9 8 12 12 H 1.07997 * 119.99860 * 359.97438 * 11 10 9 13 13 C 1.37874 * 119.99756 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00210 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99865 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47022 * 90.00410 * 15 13 11 17 17 H 1.48498 * 109.47580 * 210.00173 * 15 13 11 18 18 H 1.48497 * 109.47339 * 330.00560 * 15 13 11 19 19 C 1.50696 * 109.47115 * 240.00522 * 2 1 3 20 20 N 1.30810 * 126.24556 * 285.02637 * 19 2 1 21 21 N 1.28684 * 110.28940 * 179.97438 * 20 19 2 22 22 C 1.32303 * 109.48335 * 0.02562 * 21 20 19 23 23 C 1.40823 * 133.46587 * 180.02562 * 22 21 20 24 24 C 1.36019 * 119.22601 * 179.97438 * 23 22 21 25 25 C 1.40548 * 119.74773 * 359.97438 * 24 23 22 26 26 C 1.34952 * 120.36596 * 359.97438 * 25 24 23 27 27 N 1.36061 * 126.25100 * 104.99547 * 19 2 1 28 28 H 1.08999 * 109.47430 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47068 * 299.99740 * 1 2 3 30 30 H 1.09000 * 109.47392 * 59.99522 * 1 2 3 31 31 H 0.97001 * 120.00462 * 84.99540 * 4 2 1 32 32 H 1.09005 * 109.47434 * 300.00018 * 8 5 4 33 33 H 1.08998 * 109.47136 * 59.99918 * 8 5 4 34 34 H 1.08999 * 109.47302 * 300.00609 * 9 8 5 35 35 H 1.09007 * 109.47104 * 60.00214 * 9 8 5 36 36 H 1.09003 * 109.46945 * 300.00739 * 10 9 8 37 37 H 1.08998 * 109.47079 * 59.99969 * 10 9 8 38 38 H 0.97007 * 120.00401 * 180.02562 * 14 13 11 39 39 H 1.07997 * 120.38847 * 359.97438 * 23 22 21 40 40 H 1.07997 * 120.12778 * 179.97438 * 24 23 22 41 41 H 1.08003 * 119.81734 * 179.97438 * 25 24 23 42 42 H 1.08002 * 119.74253 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 16 2.4122 0.1770 2.5505 6 8 2.8606 -0.8031 3.4764 7 8 3.2874 1.1905 2.0751 8 6 0.8408 0.8987 3.0985 9 6 1.0751 1.7337 4.3590 10 6 -0.2502 2.3430 4.8209 11 6 -0.0192 3.1660 6.0621 12 1 0.9735 3.2460 6.4799 13 6 -1.0751 3.8166 6.6641 14 7 -2.2840 3.7187 6.1556 15 14 -0.7890 4.8361 8.2030 16 1 -0.4700 6.2345 7.8181 17 1 -2.0142 4.8209 9.0419 18 1 0.3448 4.2637 8.9723 19 6 2.0323 -0.7103 -1.2305 20 7 2.0323 -2.0028 -1.4316 21 7 2.5306 -2.2748 -2.5864 22 6 2.8807 -1.1515 -3.1916 23 6 3.4609 -0.8651 -4.4424 24 6 3.7032 0.4297 -4.7812 25 6 3.3726 1.4591 -3.8832 26 6 2.8162 1.1696 -2.6884 27 7 2.5682 -0.1242 -2.3353 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 2.1109 -1.6563 1.1948 32 1 0.4386 1.5352 2.3102 33 1 0.1315 0.1008 3.3184 34 1 1.4770 1.0970 5.1471 35 1 1.7845 2.5318 4.1395 36 1 -0.6516 2.9798 4.0325 37 1 -0.9599 1.5454 5.0402 38 1 -3.0269 4.1768 6.5790 39 1 3.7104 -1.6642 -5.1247 40 1 4.1480 0.6659 -5.7366 41 1 3.5650 2.4876 -4.1509 42 1 2.5657 1.9686 -2.0062 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000447195451.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:18 Heat of formation + Delta-G solvation = -2.615958 kcal Electronic energy + Delta-G solvation = -26541.761689 eV Core-core repulsion = 22649.376906 eV Total energy + Delta-G solvation = -3892.384784 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.64585 -39.22379 -38.37788 -37.67585 -37.12106 -36.45934 -34.87323 -34.16268 -32.21550 -31.26575 -29.93206 -29.50626 -25.74923 -25.27759 -25.12055 -24.31395 -22.44704 -22.09533 -20.52423 -19.45910 -18.66156 -18.56147 -18.27648 -17.71563 -17.47946 -17.18757 -16.70280 -16.48243 -16.29547 -15.80796 -15.74366 -15.21751 -14.67524 -14.52349 -14.14307 -13.72466 -13.58100 -13.47970 -13.44251 -13.31103 -13.26320 -13.23256 -12.99881 -12.79744 -12.76102 -12.69050 -12.56359 -12.39070 -12.22185 -12.11896 -11.71195 -11.66506 -11.36752 -11.21283 -10.70456 -10.61514 -10.55008 -9.13218 -8.20939 -6.31029 -0.86814 -0.31814 0.04436 1.16129 1.41360 1.42110 1.48602 1.53102 1.74945 2.36050 2.41040 2.68075 2.80670 3.12939 3.14209 3.28206 3.47496 3.53852 3.68702 3.81312 3.90478 3.92570 4.03783 4.10295 4.25845 4.40093 4.58317 4.65278 4.69086 4.75548 4.90455 4.94808 4.96711 5.04008 5.09897 5.16755 5.24485 5.43300 5.48918 5.67293 5.82273 5.83552 5.83937 6.22429 6.84873 7.38118 7.38189 8.90256 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.021204 B = 0.002369 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.196361 B =11815.297531 C =12196.599637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.240 3.760 3 H 0.125 0.875 4 N -1.106 6.106 5 S 2.625 3.375 6 O -0.989 6.989 7 O -0.984 6.984 8 C -0.605 4.605 9 C -0.106 4.106 10 C 0.031 3.969 11 C -0.550 4.550 12 H 0.059 0.941 13 C 0.004 3.996 14 N -0.929 5.929 15 Si 0.959 3.041 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.267 1.267 19 C 0.129 3.871 20 N -0.268 5.268 21 N -0.342 5.342 22 C 0.184 3.816 23 C -0.108 4.108 24 C -0.059 4.059 25 C -0.121 4.121 26 C 0.037 3.963 27 N -0.387 5.387 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.427 0.573 32 H 0.157 0.843 33 H 0.152 0.848 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.009 0.991 37 H 0.003 0.997 38 H 0.264 0.736 39 H 0.172 0.828 40 H 0.191 0.809 41 H 0.199 0.801 42 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.547 -2.990 -26.140 27.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.130 3.870 3 H 0.142 0.858 4 N -0.865 5.865 5 S 2.722 3.278 6 O -0.980 6.980 7 O -0.974 6.974 8 C -0.737 4.737 9 C -0.146 4.146 10 C -0.007 4.007 11 C -0.589 4.589 12 H 0.077 0.923 13 C -0.194 4.194 14 N -0.569 5.569 15 Si 0.784 3.216 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.191 1.191 19 C -0.136 4.136 20 N -0.107 5.107 21 N -0.188 5.188 22 C -0.065 4.065 23 C -0.130 4.130 24 C -0.084 4.084 25 C -0.141 4.141 26 C -0.085 4.085 27 N -0.067 5.067 28 H 0.091 0.909 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.263 0.737 32 H 0.175 0.825 33 H 0.170 0.830 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.028 0.972 37 H 0.022 0.978 38 H 0.073 0.927 39 H 0.189 0.811 40 H 0.208 0.792 41 H 0.216 0.784 42 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 9.982 -4.302 -25.369 27.599 hybrid contribution -0.640 1.046 0.741 1.433 sum 9.342 -3.256 -24.628 26.540 Atomic orbital electron populations 1.22512 0.91045 1.04798 1.05077 1.19167 0.95698 0.94859 0.77266 0.85763 1.55538 1.84124 1.20707 1.26122 1.04460 0.77181 0.73570 0.72619 1.93551 1.80791 1.60056 1.63569 1.93528 1.62853 1.61178 1.79810 1.30598 1.21388 1.12768 1.08913 1.21332 1.00971 0.98379 0.93877 1.18964 0.91892 0.94766 0.95078 1.21744 0.94797 1.30392 1.11928 0.92260 1.25882 0.94915 0.97870 1.00781 1.70058 1.00326 1.44452 1.42021 0.85531 0.77788 0.79122 0.79148 1.19627 1.20765 1.19113 1.24855 1.06172 0.90434 0.92169 1.73988 1.15038 1.11533 1.10184 1.74861 1.19749 1.21822 1.02349 1.22973 1.03112 0.84378 0.96049 1.20692 1.00623 1.00314 0.91332 1.21808 0.94930 0.90234 1.01382 1.21624 0.97684 1.03558 0.91256 1.22549 1.01815 0.83412 1.00680 1.43791 1.39812 1.09147 1.13913 0.90911 0.88925 0.89377 0.73704 0.82504 0.83013 0.91820 0.91095 0.97235 0.97845 0.92688 0.81072 0.79223 0.78362 0.78716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.75 9.46 71.98 0.68 -2.07 16 2 C 0.24 4.64 3.28 44.25 0.15 4.78 16 3 H 0.12 1.91 7.05 -2.39 -0.02 1.89 16 4 N -1.11 -25.08 5.35 -172.54 -0.92 -26.01 16 5 S 2.63 72.97 5.44 -56.49 -0.31 72.66 16 6 O -0.99 -34.82 18.08 -127.65 -2.31 -37.12 16 7 O -0.98 -31.50 17.39 -127.65 -2.22 -33.72 16 8 C -0.60 -16.35 5.22 71.98 0.38 -15.98 16 9 C -0.11 -4.04 5.16 30.60 0.16 -3.88 16 10 C 0.03 1.54 4.97 29.85 0.15 1.68 16 11 C -0.55 -30.37 9.11 25.60 0.23 -30.13 16 12 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 13 C 0.00 0.21 5.46 84.65 0.46 0.68 16 14 N -0.93 -54.35 13.29 21.45 0.28 -54.07 16 15 Si 0.96 43.34 29.54 68.60 2.03 45.37 16 16 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 17 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 18 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 19 C 0.13 3.03 6.96 137.71 0.96 3.99 16 20 N -0.27 -7.83 11.95 -49.69 -0.59 -8.43 16 21 N -0.34 -10.03 12.31 -55.40 -0.68 -10.71 16 22 C 0.18 4.05 7.92 134.07 1.06 5.12 16 23 C -0.11 -1.33 10.11 22.39 0.23 -1.10 16 24 C -0.06 -0.28 10.07 22.32 0.22 -0.06 16 25 C -0.12 -0.55 9.98 22.08 0.22 -0.33 16 26 C 0.04 0.40 10.80 83.23 0.90 1.30 16 27 N -0.39 -7.59 2.95 -342.88 -1.01 -8.60 16 28 H 0.07 1.26 8.14 -2.39 -0.02 1.25 16 29 H 0.09 1.28 5.78 -2.39 -0.01 1.27 16 30 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.43 9.78 8.59 -96.75 -0.83 8.95 16 32 H 0.16 3.33 6.77 -2.39 -0.02 3.31 16 33 H 0.15 3.61 8.14 -2.39 -0.02 3.59 16 34 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.07 2.60 8.14 -2.38 -0.02 2.58 16 36 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 38 H 0.26 14.56 8.31 -92.70 -0.77 13.79 16 39 H 0.17 1.43 8.06 -2.91 -0.02 1.40 16 40 H 0.19 -0.63 8.06 -2.91 -0.02 -0.66 16 41 H 0.20 -0.68 8.06 -2.91 -0.02 -0.70 16 42 H 0.20 1.05 7.76 -2.91 -0.02 1.03 16 Total: -1.00 -85.82 369.28 0.28 -85.54 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: 0.22 Total: 11.09 kcal Atomic # 6 Polarization: -41.80 SS G_CDS: 5.79 Total: -36.00 kcal Atomic # 7 Polarization: -104.89 SS G_CDS: -2.93 Total: -107.81 kcal Atomic # 8 Polarization: -66.32 SS G_CDS: -4.53 Total: -70.84 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: 72.97 SS G_CDS: -0.31 Total: 72.66 kcal Total: -85.82 0.28 -85.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447195451.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.925 kcal (2) G-P(sol) polarization free energy of solvation -85.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds