Wall clock time and date at job start Tue Mar 31 2020 20:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46951 * 2 1 4 4 N 1.46500 * 109.47090 * 239.99833 * 2 1 3 5 5 S 1.65601 * 120.00188 * 94.99659 * 4 2 1 6 6 O 1.42097 * 104.27589 * 181.07349 * 5 4 2 7 7 O 1.42099 * 104.27523 * 308.93073 * 5 4 2 8 8 C 1.81400 * 104.44594 * 65.00274 * 5 4 2 9 9 C 1.53002 * 109.47102 * 180.02562 * 8 5 4 10 10 C 1.52994 * 109.47050 * 179.97438 * 9 8 5 11 11 C 1.50710 * 109.47056 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99433 * 0.02562 * 11 10 9 13 13 C 1.37871 * 119.99857 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00417 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99835 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47240 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47193 * 120.00154 * 15 13 11 18 18 H 1.48506 * 109.47302 * 240.00157 * 15 13 11 19 19 C 1.50697 * 109.47274 * 119.99746 * 2 1 3 20 20 N 1.30809 * 126.24726 * 75.01917 * 19 2 1 21 21 N 1.28678 * 110.29065 * 179.97438 * 20 19 2 22 22 C 1.32303 * 109.48448 * 0.02562 * 21 20 19 23 23 C 1.40818 * 133.46527 * 179.97438 * 22 21 20 24 24 C 1.36024 * 119.22493 * 180.02562 * 23 22 21 25 25 C 1.40548 * 119.74944 * 359.72195 * 24 23 22 26 26 C 1.34957 * 120.36397 * 0.55810 * 25 24 23 27 27 N 1.36065 * 126.24670 * 255.00399 * 19 2 1 28 28 H 1.09000 * 109.47254 * 300.00176 * 1 2 3 29 29 H 1.09001 * 109.47433 * 59.99998 * 1 2 3 30 30 H 1.09003 * 109.47411 * 180.02562 * 1 2 3 31 31 H 0.96997 * 119.99623 * 275.00236 * 4 2 1 32 32 H 1.09008 * 109.47235 * 299.99880 * 8 5 4 33 33 H 1.08997 * 109.47751 * 59.99964 * 8 5 4 34 34 H 1.08994 * 109.46789 * 300.00055 * 9 8 5 35 35 H 1.09005 * 109.47269 * 59.99929 * 9 8 5 36 36 H 1.08994 * 109.47611 * 299.99848 * 10 9 8 37 37 H 1.08997 * 109.47085 * 60.00270 * 10 9 8 38 38 H 0.97000 * 120.00123 * 179.97438 * 14 13 11 39 39 H 1.08001 * 120.38705 * 0.05082 * 23 22 21 40 40 H 1.08001 * 120.12273 * 180.02562 * 24 23 22 41 41 H 1.07995 * 119.81906 * 180.28711 * 25 24 23 42 42 H 1.08002 * 119.74870 * 179.73904 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 16 2.4121 0.1770 -2.5506 6 8 2.8121 -0.8077 -3.4936 7 8 1.2750 0.9964 -2.7846 8 6 3.8313 1.1871 -2.0442 9 6 4.2933 2.0451 -3.2237 10 6 5.4899 2.8975 -2.7964 11 6 5.9454 3.7422 -3.9584 12 1 5.4324 3.6778 -4.9066 13 6 7.0170 4.5971 -3.8109 14 7 7.6419 4.6752 -2.6564 15 14 7.5811 5.6447 -5.2510 16 1 6.7187 5.3726 -6.4289 17 1 7.4836 7.0809 -4.8866 18 1 8.9901 5.3127 -5.5826 19 6 2.0324 -0.7103 1.2305 20 7 2.0331 -2.0029 1.4312 21 7 2.5322 -2.2749 2.5856 22 6 2.8810 -1.1516 3.1914 23 6 3.4612 -0.8654 4.4422 24 6 3.7020 0.4296 4.7818 25 6 3.3756 1.4588 3.8820 26 6 2.8149 1.1696 2.6890 27 7 2.5683 -0.1242 2.3353 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 2.1109 -1.6562 -1.1948 32 1 3.5399 1.8342 -1.2167 33 1 4.6459 0.5361 -1.7269 34 1 4.5845 1.3984 -4.0513 35 1 3.4786 2.6962 -3.5406 36 1 5.1983 3.5442 -1.9689 37 1 6.3047 2.2467 -2.4793 38 1 8.3960 5.2764 -2.5528 39 1 3.7124 -1.6647 5.1236 40 1 4.1468 0.6657 5.7372 41 1 3.5706 2.4870 4.1486 42 1 2.5643 1.9686 2.0069 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000447195453.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:22 Heat of formation + Delta-G solvation = 24.356719 kcal Electronic energy + Delta-G solvation = -26828.005594 eV Core-core repulsion = 22936.790433 eV Total energy + Delta-G solvation = -3891.215160 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.90482 -38.60846 -37.23691 -36.66259 -35.83573 -34.76690 -34.21360 -32.26369 -31.54975 -30.49840 -29.04069 -27.90903 -24.64758 -24.53857 -23.84712 -23.59447 -21.40786 -20.78313 -19.41603 -18.59608 -17.79283 -17.41306 -16.96768 -16.69644 -16.60127 -16.03345 -15.80520 -15.42506 -15.17977 -14.58112 -14.51512 -14.22314 -13.87874 -13.04411 -12.98035 -12.75781 -12.71182 -12.53831 -12.35983 -12.09926 -11.97969 -11.92513 -11.91165 -11.87228 -11.64177 -11.52828 -11.32811 -10.98763 -10.92002 -10.84660 -10.51521 -10.05957 -10.02502 -9.92436 -9.42220 -9.16333 -8.47261 -8.47202 -6.12020 -4.15089 0.20437 0.30414 0.69271 1.83638 2.29169 2.75297 2.93977 3.25266 3.33167 3.38022 3.51650 3.80529 3.93000 4.03836 4.13601 4.27579 4.33638 4.37500 4.48294 4.55722 4.75096 4.90940 5.02825 5.10368 5.17753 5.22689 5.24962 5.44713 5.50445 5.61793 5.63894 5.71588 5.78257 5.89241 5.98657 6.17766 6.34953 6.43941 6.76377 6.79803 7.48984 7.58318 7.85877 8.19843 8.25987 8.91307 9.50203 10.99226 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.011215 B = 0.003198 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.045736 B = 8753.057966 C =10595.374601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.252 3.748 3 H 0.098 0.902 4 N -1.112 6.112 5 S 2.599 3.401 6 O -0.954 6.954 7 O -0.955 6.955 8 C -0.612 4.612 9 C -0.105 4.105 10 C 0.031 3.969 11 C -0.526 4.526 12 H 0.059 0.941 13 C 0.058 3.942 14 N -0.896 5.896 15 Si 0.894 3.106 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.283 1.283 19 C 0.133 3.867 20 N -0.233 5.233 21 N -0.288 5.288 22 C 0.194 3.806 23 C -0.080 4.080 24 C -0.085 4.085 25 C -0.131 4.131 26 C 0.062 3.938 27 N -0.384 5.384 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.425 0.575 32 H 0.122 0.878 33 H 0.129 0.871 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.020 0.980 37 H 0.020 0.980 38 H 0.261 0.739 39 H 0.158 0.842 40 H 0.149 0.851 41 H 0.160 0.840 42 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.683 -7.038 17.225 21.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.141 3.859 3 H 0.116 0.884 4 N -0.870 5.870 5 S 2.694 3.306 6 O -0.944 6.944 7 O -0.945 6.945 8 C -0.743 4.743 9 C -0.145 4.145 10 C -0.008 4.008 11 C -0.564 4.564 12 H 0.077 0.923 13 C -0.143 4.143 14 N -0.535 5.535 15 Si 0.722 3.278 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.130 4.130 20 N -0.073 5.073 21 N -0.134 5.134 22 C -0.055 4.055 23 C -0.101 4.101 24 C -0.109 4.109 25 C -0.153 4.153 26 C -0.061 4.061 27 N -0.064 5.064 28 H 0.085 0.915 29 H 0.110 0.890 30 H 0.093 0.907 31 H 0.261 0.739 32 H 0.140 0.860 33 H 0.148 0.852 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.071 0.929 39 H 0.175 0.825 40 H 0.167 0.833 41 H 0.177 0.823 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -12.322 -8.441 16.073 21.942 hybrid contribution 1.301 1.765 0.236 2.205 sum -11.022 -6.677 16.309 20.785 Atomic orbital electron populations 1.22341 0.92016 1.04306 1.03893 1.18791 0.95453 0.93450 0.78229 0.88394 1.55900 1.82224 1.20426 1.28467 1.05485 0.76892 0.75040 0.73146 1.93602 1.84449 1.58027 1.58319 1.93580 1.47184 1.70333 1.83376 1.30594 1.18883 1.14033 1.10818 1.21511 1.02121 0.97766 0.93068 1.19064 0.90814 0.93858 0.97017 1.21286 1.14615 1.22788 0.97740 0.92252 1.25013 0.96362 0.97040 0.95921 1.69959 1.21742 1.38088 1.23676 0.86499 0.78632 0.80056 0.82640 1.19551 1.20918 1.20915 1.24883 1.05863 0.90818 0.91483 1.74132 1.13690 1.09936 1.09556 1.75007 1.17054 1.19794 1.01524 1.22399 1.03504 0.84677 0.94874 1.20318 0.99228 0.98337 0.92261 1.21253 0.97786 0.91569 1.00337 1.21036 0.99846 1.01734 0.92666 1.21807 1.01009 0.84191 0.99045 1.43673 1.40126 1.08063 1.14527 0.91508 0.89043 0.90736 0.73925 0.85961 0.85236 0.91399 0.91386 0.96211 0.96156 0.92939 0.82468 0.83282 0.82255 0.80927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.53 9.50 37.16 0.35 -1.18 16 2 C 0.25 2.55 3.15 -69.08 -0.22 2.33 16 3 H 0.10 0.77 6.72 -51.93 -0.35 0.42 16 4 N -1.11 -12.80 5.35 -5.88 -0.03 -12.83 16 5 S 2.60 36.79 5.38 -107.50 -0.58 36.21 16 6 O -0.95 -16.69 18.08 -57.54 -1.04 -17.73 16 7 O -0.95 -15.25 17.11 -57.54 -0.98 -16.23 16 8 C -0.61 -8.94 5.96 37.16 0.22 -8.72 16 9 C -0.11 -2.05 5.16 -26.73 -0.14 -2.18 16 10 C 0.03 0.75 4.97 -27.88 -0.14 0.62 16 11 C -0.53 -14.47 9.11 -34.44 -0.31 -14.78 16 12 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -25.96 13.29 55.43 0.74 -25.23 16 15 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 16 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 C 0.13 1.54 6.96 -154.22 -1.07 0.47 16 20 N -0.23 -3.24 11.95 32.94 0.39 -2.85 16 21 N -0.29 -4.05 12.31 31.14 0.38 -3.66 16 22 C 0.19 2.20 7.92 -156.06 -1.24 0.96 16 23 C -0.08 -0.60 10.11 -39.40 -0.40 -1.00 16 24 C -0.08 -0.44 10.07 -39.51 -0.40 -0.84 16 25 C -0.13 -0.70 9.98 -39.88 -0.40 -1.09 16 26 C 0.06 0.44 10.80 -16.69 -0.18 0.26 16 27 N -0.38 -3.94 2.95 -59.73 -0.18 -4.12 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.09 0.90 7.42 -51.93 -0.39 0.51 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.43 4.76 8.59 -34.47 -0.30 4.46 16 32 H 0.12 1.47 7.44 -51.92 -0.39 1.08 16 33 H 0.13 1.78 8.14 -51.93 -0.42 1.36 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.15 0.32 8.06 -52.49 -0.42 -0.10 16 41 H 0.16 0.40 8.06 -52.49 -0.42 -0.02 16 42 H 0.17 0.77 7.76 -52.49 -0.41 0.36 16 LS Contribution 371.57 15.07 5.60 5.60 Total: -1.00 -37.62 371.57 -10.33 -47.95 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -5.59 Total: 0.37 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: -4.01 Total: -23.63 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: 1.31 Total: -48.69 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -2.02 Total: -33.96 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 36.79 SS G_CDS: -0.58 Total: 36.21 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -37.62 -10.33 -47.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447195453.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.305 kcal (2) G-P(sol) polarization free energy of solvation -37.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds