Wall clock time and date at job start Tue Mar 31 2020 20:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 N 1.46504 * 109.46930 * 120.00198 * 2 1 3 5 5 C 1.34777 * 119.99854 * 274.99613 * 4 2 1 6 6 O 1.21593 * 119.99953 * 0.02562 * 5 4 2 7 7 N 1.34773 * 120.00097 * 180.27545 * 5 4 2 8 8 C 1.47424 * 125.64847 * 359.42578 * 7 5 4 9 9 C 1.55124 * 104.72581 * 155.81631 * 8 7 5 10 10 C 1.55157 * 101.48746 * 37.28923 * 9 8 7 11 11 O 1.42900 * 110.71805 * 82.70019 * 10 9 8 12 12 C 1.50696 * 110.87291 * 205.90120 * 10 9 8 13 13 H 1.08001 * 120.00279 * 355.06314 * 12 10 9 14 14 C 1.37874 * 120.00042 * 175.06924 * 12 10 9 15 15 N 1.31519 * 120.00120 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00208 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47170 * 89.99477 * 16 14 12 18 18 H 1.48497 * 109.47372 * 209.99472 * 16 14 12 19 19 H 1.48498 * 109.46974 * 329.99858 * 16 14 12 20 20 C 1.47023 * 125.65265 * 179.72599 * 7 5 4 21 21 C 1.50700 * 109.47132 * 240.00180 * 2 1 3 22 22 C 1.38246 * 120.00369 * 264.72392 * 21 2 1 23 23 C 1.38218 * 120.00902 * 179.77210 * 22 21 2 24 24 C 1.38260 * 120.02835 * 0.50551 * 23 22 21 25 25 C 1.38194 * 120.01253 * 359.74669 * 24 23 22 26 26 C 1.38321 * 120.01002 * 84.99959 * 21 2 1 27 27 Cl 1.73604 * 120.01224 * 359.95683 * 26 21 2 28 28 H 1.09000 * 109.47470 * 299.99796 * 1 2 3 29 29 H 1.08998 * 109.47338 * 59.99872 * 1 2 3 30 30 H 1.09001 * 109.46979 * 180.02562 * 1 2 3 31 31 H 0.97000 * 120.00410 * 95.00338 * 4 2 1 32 32 H 1.09007 * 110.36232 * 274.73996 * 8 7 5 33 33 H 1.09004 * 110.37027 * 37.06173 * 8 7 5 34 34 H 1.09004 * 111.18844 * 279.18730 * 9 8 7 35 35 H 1.09001 * 110.90994 * 155.27228 * 9 8 7 36 36 H 0.96696 * 114.00505 * 185.02195 * 11 10 9 37 37 H 0.96994 * 119.99928 * 180.02562 * 15 14 12 38 38 H 1.09003 * 109.88289 * 300.44400 * 20 7 5 39 39 H 1.09004 * 109.88082 * 61.44881 * 20 7 5 40 40 H 1.08001 * 119.99251 * 359.97438 * 22 21 2 41 41 H 1.08003 * 119.98493 * 180.22992 * 23 22 21 42 42 H 1.08002 * 119.99312 * 179.77355 * 24 23 22 43 43 H 1.08006 * 120.00720 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1470 -0.0183 2.3571 6 8 1.8575 1.1614 2.4118 7 7 2.6015 -0.6523 3.4562 8 6 2.9810 -2.0748 3.5323 9 6 3.9745 -2.1547 4.7210 10 6 3.3524 -1.1366 5.7128 11 8 2.3000 -1.7428 6.4658 12 6 4.4044 -0.5700 6.6310 13 1 5.4156 -0.9472 6.5916 14 6 4.0760 0.4300 7.5216 15 7 2.8447 0.8897 7.5694 16 14 5.3798 1.1319 8.6604 17 1 6.0478 2.2815 7.9990 18 1 4.7420 1.5886 9.9212 19 1 6.3862 0.0836 8.9661 20 6 2.7950 -0.0413 4.7794 21 6 2.0323 -0.7104 -1.2305 22 6 2.3665 -2.0503 -1.1671 23 6 2.8228 -2.7031 -2.2968 24 6 2.9552 -2.0141 -3.4881 25 6 2.6263 -0.6733 -3.5513 26 6 2.1645 -0.0205 -2.4221 27 17 1.7507 1.6637 -2.5009 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 2.2490 -1.6318 1.1527 32 1 2.1035 -2.6916 3.7263 33 1 3.4689 -2.3873 2.6090 34 1 4.9752 -1.8450 4.4196 35 1 3.9898 -3.1573 5.1485 36 1 1.8272 -1.1297 7.0450 37 1 2.6137 1.5935 8.1957 38 1 3.5063 0.7815 4.7074 39 1 1.8421 0.3250 5.1615 40 1 2.2680 -2.5879 -0.2356 41 1 3.0803 -3.7509 -2.2477 42 1 3.3152 -2.5238 -4.3695 43 1 2.7293 -0.1352 -4.4821 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591894901.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:56 Heat of formation + Delta-G solvation = -74.198009 kcal Electronic energy + Delta-G solvation = -27198.287212 eV Core-core repulsion = 23268.461940 eV Total energy + Delta-G solvation = -3929.825272 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.56456 -40.45708 -39.13790 -37.45244 -36.64388 -36.07395 -34.22390 -32.93186 -31.74720 -31.39670 -30.16833 -29.47374 -27.00360 -25.10300 -24.34876 -23.60919 -22.00133 -21.39746 -20.95418 -19.44838 -18.99063 -18.04156 -17.47579 -17.05636 -16.73779 -16.49181 -16.18017 -16.09544 -15.41010 -15.30643 -14.94262 -14.79829 -14.73166 -14.64456 -14.37766 -13.95816 -13.65647 -13.50838 -13.33285 -13.23071 -12.85504 -12.77024 -12.55952 -12.52130 -12.45805 -12.33232 -12.28442 -12.13890 -12.07237 -11.60153 -11.33348 -11.16275 -10.65574 -10.39754 -10.28517 -9.91044 -9.67198 -9.43001 -8.25887 -6.41604 0.13616 0.25610 1.14030 1.40837 1.43164 1.52602 1.59517 2.11274 2.37968 2.64095 2.99648 3.01154 3.41305 3.77457 3.79884 4.03052 4.06330 4.17166 4.21369 4.21648 4.37464 4.40240 4.42470 4.55996 4.60530 4.70445 4.72455 4.82110 4.89733 5.05992 5.13130 5.14304 5.18691 5.24532 5.30298 5.37225 5.44637 5.50360 5.54969 5.75112 5.83822 6.02431 6.14606 6.65256 7.02082 7.28004 7.35454 7.53129 8.80134 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.019218 B = 0.002735 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.586724 B =10233.594202 C =10752.511540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.199 3.801 3 H 0.074 0.926 4 N -0.724 5.724 5 C 0.712 3.288 6 O -0.640 6.640 7 N -0.634 5.634 8 C 0.106 3.894 9 C -0.109 4.109 10 C 0.234 3.766 11 O -0.586 6.586 12 C -0.557 4.557 13 H 0.068 0.932 14 C 0.025 3.975 15 N -0.915 5.915 16 Si 0.962 3.038 17 H -0.280 1.280 18 H -0.282 1.282 19 H -0.263 1.263 20 C 0.143 3.857 21 C -0.093 4.093 22 C -0.111 4.111 23 C -0.103 4.103 24 C -0.104 4.104 25 C -0.110 4.110 26 C -0.045 4.045 27 Cl -0.079 7.079 28 H 0.041 0.959 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.407 0.593 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.375 0.625 37 H 0.269 0.731 38 H 0.027 0.973 39 H 0.027 0.973 40 H 0.141 0.859 41 H 0.162 0.838 42 H 0.164 0.836 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.644 -10.057 -23.474 25.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.094 3.906 3 H 0.092 0.908 4 N -0.383 5.383 5 C 0.414 3.586 6 O -0.522 6.522 7 N -0.371 5.371 8 C -0.016 4.016 9 C -0.147 4.147 10 C 0.193 3.807 11 O -0.394 6.394 12 C -0.595 4.595 13 H 0.086 0.914 14 C -0.176 4.176 15 N -0.555 5.555 16 Si 0.788 3.212 17 H -0.206 1.206 18 H -0.208 1.208 19 H -0.188 1.188 20 C 0.019 3.981 21 C -0.095 4.095 22 C -0.130 4.130 23 C -0.121 4.121 24 C -0.122 4.122 25 C -0.129 4.129 26 C -0.072 4.072 27 Cl -0.050 7.050 28 H 0.061 0.939 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.247 0.753 32 H 0.092 0.908 33 H 0.119 0.881 34 H 0.102 0.898 35 H 0.111 0.889 36 H 0.224 0.776 37 H 0.078 0.922 38 H 0.046 0.954 39 H 0.045 0.955 40 H 0.159 0.841 41 H 0.179 0.821 42 H 0.182 0.818 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.832 -9.437 -23.733 25.554 hybrid contribution 0.140 1.534 1.425 2.098 sum -0.692 -7.904 -22.308 23.677 Atomic orbital electron populations 1.22077 0.93515 1.03060 1.02153 1.19558 0.94671 0.95760 0.80645 0.90774 1.45089 1.71747 1.14033 1.07453 1.15682 0.78242 0.84174 0.80458 1.90857 1.59620 1.16673 1.85097 1.47888 1.67593 1.12452 1.09175 1.22483 0.98508 0.80653 0.99936 1.22750 0.98001 1.00152 0.93826 1.19705 0.84910 0.88272 0.87778 1.86088 1.51000 1.41494 1.60774 1.21836 0.96841 1.20385 1.20417 0.91412 1.25823 0.97569 0.95996 0.98237 1.69812 1.19299 1.28727 1.37621 0.85484 0.79172 0.78516 0.78042 1.20643 1.20756 1.18765 1.22348 0.97975 0.97200 0.80627 1.19699 1.01492 0.95342 0.92956 1.21109 0.99144 0.92291 1.00422 1.21624 0.96973 1.01761 0.91741 1.21566 0.98126 0.92968 0.99528 1.21340 0.98539 0.95817 0.97156 1.20914 1.04919 0.85515 0.95828 1.98383 1.92176 1.15982 1.98427 0.93941 0.90444 0.90682 0.75334 0.90780 0.88082 0.89850 0.88931 0.77629 0.92161 0.95446 0.95462 0.84117 0.82081 0.81833 0.83212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.83 9.47 71.98 0.68 -3.14 16 2 C 0.20 5.45 2.30 44.24 0.10 5.55 16 3 H 0.07 2.50 6.56 -2.39 -0.02 2.49 16 4 N -0.72 -21.29 4.95 -461.40 -2.29 -23.58 16 5 C 0.71 29.32 8.45 179.06 1.51 30.83 16 6 O -0.64 -32.52 16.33 -4.01 -0.07 -32.59 16 7 N -0.63 -26.20 3.32 -829.31 -2.76 -28.95 16 8 C 0.11 3.34 6.58 86.93 0.57 3.91 16 9 C -0.11 -4.05 6.24 32.06 0.20 -3.85 16 10 C 0.23 11.28 0.85 -10.36 -0.01 11.27 16 11 O -0.59 -29.39 13.07 -148.98 -1.95 -31.34 16 12 C -0.56 -29.28 8.13 25.60 0.21 -29.07 16 13 H 0.07 3.45 7.78 -2.91 -0.02 3.43 16 14 C 0.02 1.31 5.28 84.65 0.45 1.75 16 15 N -0.92 -50.57 10.96 21.45 0.24 -50.34 16 16 Si 0.96 42.52 29.54 68.60 2.03 44.54 16 17 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 18 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 19 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 20 C 0.14 7.22 5.23 86.73 0.45 7.68 16 21 C -0.09 -1.96 5.06 -19.84 -0.10 -2.06 16 22 C -0.11 -1.71 9.24 22.27 0.21 -1.50 16 23 C -0.10 -1.09 10.05 22.27 0.22 -0.87 16 24 C -0.10 -1.05 10.05 22.26 0.22 -0.82 16 25 C -0.11 -1.56 9.83 22.29 0.22 -1.34 16 26 C -0.04 -0.89 6.31 22.32 0.14 -0.75 16 27 Cl -0.08 -1.75 27.16 -2.72 -0.07 -1.83 16 28 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.08 1.77 7.90 -2.39 -0.02 1.75 16 30 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.41 9.07 4.67 -92.71 -0.43 8.64 16 32 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 33 H 0.10 2.27 7.28 -2.38 -0.02 2.25 16 34 H 0.08 2.97 8.05 -2.39 -0.02 2.95 16 35 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 36 H 0.37 19.79 7.45 -74.06 -0.55 19.24 16 37 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 38 H 0.03 1.55 7.81 -2.39 -0.02 1.53 16 39 H 0.03 1.54 7.92 -2.39 -0.02 1.52 16 40 H 0.14 1.74 6.06 -2.91 -0.02 1.72 16 41 H 0.16 0.74 8.06 -2.91 -0.02 0.72 16 42 H 0.16 0.61 8.06 -2.91 -0.02 0.59 16 43 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 Total: -1.00 -70.40 366.27 0.28 -70.12 By element: Atomic # 1 Polarization: 36.31 SS G_CDS: 0.07 Total: 36.37 kcal Atomic # 6 Polarization: 12.51 SS G_CDS: 5.08 Total: 17.59 kcal Atomic # 7 Polarization: -98.06 SS G_CDS: -4.81 Total: -102.87 kcal Atomic # 8 Polarization: -61.91 SS G_CDS: -2.01 Total: -63.93 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.54 kcal Atomic # 17 Polarization: -1.75 SS G_CDS: -0.07 Total: -1.83 kcal Total: -70.40 0.28 -70.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591894901.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.083 kcal (2) G-P(sol) polarization free energy of solvation -70.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds