Wall clock time and date at job start Tue Mar 31 2020 20:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47143 * 2 1 4 4 N 1.46499 * 109.46923 * 119.99863 * 2 1 3 5 5 C 1.34779 * 120.00161 * 274.99895 * 4 2 1 6 6 O 1.21593 * 119.99978 * 359.97438 * 5 4 2 7 7 N 1.34771 * 120.00278 * 180.02562 * 5 4 2 8 8 C 1.47428 * 125.64932 * 0.02562 * 7 5 4 9 9 C 1.54905 * 104.92788 * 204.15369 * 8 7 5 10 10 C 1.55150 * 101.58367 * 322.93561 * 9 8 7 11 11 O 1.42903 * 110.71904 * 277.13578 * 10 9 8 12 12 C 1.50700 * 110.72088 * 154.04582 * 10 9 8 13 13 H 1.07999 * 119.99987 * 268.65132 * 12 10 9 14 14 C 1.37877 * 120.00383 * 88.64373 * 12 10 9 15 15 N 1.31515 * 120.00249 * 173.92523 * 14 12 10 16 16 Si 1.86797 * 120.00003 * 353.93492 * 14 12 10 17 17 H 1.48503 * 109.47515 * 86.06405 * 16 14 12 18 18 H 1.48502 * 109.47066 * 206.06475 * 16 14 12 19 19 H 1.48501 * 109.47146 * 326.06322 * 16 14 12 20 20 C 1.47290 * 125.79683 * 180.02562 * 7 5 4 21 21 C 1.50695 * 109.46910 * 239.99578 * 2 1 3 22 22 C 1.38233 * 119.99126 * 279.72466 * 21 2 1 23 23 C 1.38216 * 120.01577 * 179.72579 * 22 21 2 24 24 C 1.38350 * 119.98475 * 0.55398 * 23 22 21 25 25 Cl 1.73605 * 120.01338 * 179.74558 * 24 23 22 26 26 C 1.38351 * 119.97131 * 359.72166 * 24 23 22 27 27 C 1.38214 * 119.98948 * 0.02562 * 26 24 23 28 28 H 1.08999 * 109.46989 * 300.00445 * 1 2 3 29 29 H 1.08996 * 109.46954 * 60.00030 * 1 2 3 30 30 H 1.08997 * 109.47143 * 180.02562 * 1 2 3 31 31 H 0.97001 * 120.00434 * 95.00261 * 4 2 1 32 32 H 1.09005 * 110.36346 * 85.25939 * 8 7 5 33 33 H 1.08995 * 110.36606 * 323.05140 * 8 7 5 34 34 H 1.09002 * 111.00204 * 81.01378 * 9 8 7 35 35 H 1.09001 * 111.00240 * 204.85797 * 9 8 7 36 36 H 0.96707 * 113.99611 * 174.37208 * 11 10 9 37 37 H 0.96996 * 120.00053 * 180.02562 * 15 14 12 38 38 H 1.09008 * 109.85554 * 59.50243 * 20 7 5 39 39 H 1.09000 * 110.00452 * 298.43440 * 20 7 5 40 40 H 1.08001 * 119.99189 * 0.02562 * 22 21 2 41 41 H 1.08006 * 120.00757 * 180.27100 * 23 22 21 42 42 H 1.08005 * 120.00591 * 179.97438 * 26 24 23 43 43 H 1.07998 * 119.99313 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8583 1.1617 2.4117 7 7 2.5967 -0.6534 3.4575 8 6 2.9826 -2.0743 3.5320 9 6 2.8163 -2.4552 5.0243 10 6 3.2881 -1.1574 5.7315 11 8 4.7131 -1.1272 5.8346 12 6 2.6543 -1.0316 7.0930 13 1 1.7205 -0.5012 7.2070 14 6 3.2666 -1.5936 8.1931 15 7 2.7787 -1.3834 9.3962 16 14 4.7891 -2.6536 7.9748 17 1 5.9957 -1.7881 7.9514 18 1 4.8901 -3.6133 9.1035 19 1 4.6920 -3.4020 6.6959 20 6 2.7853 -0.0462 4.7861 21 6 2.0323 -0.7105 -1.2304 22 6 2.0719 -2.0919 -1.2628 23 6 2.5272 -2.7441 -2.3932 24 6 2.9540 -2.0140 -3.4880 25 17 3.5322 -2.8324 -4.9057 26 6 2.9195 -0.6314 -3.4528 27 6 2.4591 0.0197 -2.3239 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 2.2490 -1.6317 1.1527 32 1 4.0194 -2.2026 3.2209 33 1 2.3231 -2.6796 2.9102 34 1 1.7739 -2.6711 5.2585 35 1 3.4564 -3.2977 5.2861 36 1 5.0641 -0.2995 6.1908 37 1 3.2097 -1.7785 10.1702 38 1 1.8370 0.3494 5.1503 39 1 3.5232 0.7540 4.7291 40 1 1.7425 -2.6617 -0.4065 41 1 2.5540 -3.8235 -2.4200 42 1 3.2530 -0.0608 -4.3071 43 1 2.4317 1.0990 -2.2965 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591896488.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:08 Heat of formation + Delta-G solvation = -74.585698 kcal Electronic energy + Delta-G solvation = -26812.456037 eV Core-core repulsion = 22882.613954 eV Total energy + Delta-G solvation = -3929.842083 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.56556 -40.50243 -39.36761 -37.63327 -36.45296 -36.25146 -34.44396 -32.92484 -32.07267 -31.40938 -30.09420 -29.78687 -27.09558 -24.96236 -24.22991 -23.74235 -22.03118 -21.43182 -20.95304 -19.72762 -19.17614 -18.09205 -17.44449 -17.08078 -16.80359 -16.67453 -16.26978 -16.17407 -15.52317 -15.23853 -15.12629 -14.77739 -14.56896 -14.48353 -14.46521 -14.09220 -14.01964 -13.84228 -13.39435 -13.23348 -13.14420 -12.87180 -12.73675 -12.52794 -12.31021 -12.28249 -12.20895 -12.00125 -11.83792 -11.76279 -11.31518 -11.20296 -10.62733 -10.40571 -10.32205 -10.03659 -9.63378 -9.47755 -8.32933 -6.47791 0.05107 0.29466 1.14597 1.53133 1.54785 1.57576 1.75586 2.11054 2.45989 2.59163 2.98802 2.99901 3.49646 3.51205 3.77002 3.83029 3.92735 4.06442 4.20413 4.24741 4.30131 4.36984 4.45307 4.46831 4.58608 4.65447 4.72632 4.82991 4.87368 4.95891 4.99384 5.12856 5.15767 5.21713 5.23018 5.26277 5.35146 5.43104 5.53451 5.60960 5.76045 6.05164 6.06729 6.59467 6.93789 6.97934 7.30184 7.51832 8.80294 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.020167 B = 0.002420 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.099959 B =11568.029853 C =12446.368967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.203 3.797 3 H 0.082 0.918 4 N -0.726 5.726 5 C 0.718 3.282 6 O -0.635 6.635 7 N -0.632 5.632 8 C 0.107 3.893 9 C -0.120 4.120 10 C 0.219 3.781 11 O -0.560 6.560 12 C -0.550 4.550 13 H 0.037 0.963 14 C 0.024 3.976 15 N -0.938 5.938 16 Si 1.007 2.993 17 H -0.282 1.282 18 H -0.337 1.337 19 H -0.247 1.247 20 C 0.121 3.879 21 C -0.089 4.089 22 C -0.102 4.102 23 C -0.108 4.108 24 C -0.046 4.046 25 Cl -0.073 7.073 26 C -0.110 4.110 27 C -0.097 4.097 28 H 0.042 0.958 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.407 0.593 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.382 0.618 37 H 0.267 0.733 38 H 0.045 0.955 39 H 0.056 0.944 40 H 0.146 0.854 41 H 0.150 0.850 42 H 0.149 0.851 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.589 -4.357 -28.667 29.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.098 3.902 3 H 0.101 0.899 4 N -0.383 5.383 5 C 0.420 3.580 6 O -0.517 6.517 7 N -0.369 5.369 8 C -0.015 4.015 9 C -0.158 4.158 10 C 0.178 3.822 11 O -0.369 6.369 12 C -0.588 4.588 13 H 0.056 0.944 14 C -0.176 4.176 15 N -0.576 5.576 16 Si 0.839 3.161 17 H -0.209 1.209 18 H -0.269 1.269 19 H -0.171 1.171 20 C -0.003 4.003 21 C -0.089 4.089 22 C -0.120 4.120 23 C -0.127 4.127 24 C -0.072 4.072 25 Cl -0.045 7.045 26 C -0.128 4.128 27 C -0.116 4.116 28 H 0.061 0.939 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.245 0.755 32 H 0.097 0.903 33 H 0.117 0.883 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.232 0.768 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.163 0.837 41 H 0.167 0.833 42 H 0.167 0.833 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.332 -4.138 -28.921 29.217 hybrid contribution 0.506 0.045 0.931 1.060 sum 0.838 -4.093 -27.990 28.300 Atomic orbital electron populations 1.22145 0.93559 1.03054 1.02451 1.19624 0.94517 0.95884 0.80179 0.89949 1.45134 1.71502 1.14066 1.07632 1.15563 0.78026 0.84126 0.80285 1.90868 1.59543 1.16225 1.85069 1.47683 1.68082 1.12393 1.08702 1.22438 1.01076 0.80348 0.97643 1.23016 1.01963 0.97758 0.93083 1.19938 0.78192 0.92348 0.91698 1.86081 1.22352 1.42494 1.86009 1.21395 1.08726 1.36791 0.91907 0.94428 1.25920 1.01065 0.96486 0.94085 1.70094 1.43101 1.44940 0.99442 0.84793 0.78138 0.77571 0.75598 1.20914 1.26904 1.17141 1.22398 0.99956 0.96694 0.81231 1.19966 0.99536 0.94354 0.95080 1.21071 0.99004 0.93504 0.98412 1.21239 0.98483 1.01368 0.91600 1.21162 1.02946 0.93313 0.89792 1.98381 1.87379 1.79232 1.39465 1.21239 0.99765 0.92295 0.99522 1.21170 0.97281 1.01224 0.91922 0.93890 0.89776 0.91147 0.75548 0.90305 0.88302 0.90278 0.89436 0.76833 0.92388 0.93702 0.92552 0.83677 0.83263 0.83318 0.83463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.46 71.98 0.68 -2.15 16 2 C 0.20 3.99 2.78 44.24 0.12 4.12 16 3 H 0.08 1.93 7.44 -2.39 -0.02 1.91 16 4 N -0.73 -16.65 4.99 -461.42 -2.30 -18.95 16 5 C 0.72 23.89 8.46 179.06 1.51 25.40 16 6 O -0.64 -26.34 16.34 -4.01 -0.07 -26.41 16 7 N -0.63 -21.31 3.34 -829.07 -2.77 -24.07 16 8 C 0.11 2.92 6.56 86.85 0.57 3.49 16 9 C -0.12 -4.23 5.87 31.98 0.19 -4.04 16 10 C 0.22 9.17 0.68 -10.36 -0.01 9.17 16 11 O -0.56 -22.07 8.75 -148.98 -1.30 -23.38 16 12 C -0.55 -29.20 8.81 25.60 0.23 -28.97 16 13 H 0.04 2.27 7.81 -2.91 -0.02 2.25 16 14 C 0.02 1.33 5.46 84.65 0.46 1.79 16 15 N -0.94 -56.38 13.96 21.45 0.30 -56.08 16 16 Si 1.01 45.71 24.83 68.60 1.70 47.42 16 17 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 18 H -0.34 -15.93 7.11 99.48 0.71 -15.22 16 19 H -0.25 -10.25 5.19 99.48 0.52 -9.74 16 20 C 0.12 4.89 6.24 86.67 0.54 5.43 16 21 C -0.09 -1.34 4.96 -19.87 -0.10 -1.44 16 22 C -0.10 -1.31 9.06 22.26 0.20 -1.11 16 23 C -0.11 -1.37 9.83 22.29 0.22 -1.15 16 24 C -0.05 -0.64 6.32 22.32 0.14 -0.50 16 25 Cl -0.07 -1.02 28.96 -2.72 -0.08 -1.10 16 26 C -0.11 -1.42 9.83 22.29 0.22 -1.20 16 27 C -0.10 -1.32 9.67 22.27 0.22 -1.11 16 28 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.41 7.12 5.33 -92.71 -0.49 6.63 16 32 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 33 H 0.10 1.93 7.29 -2.39 -0.02 1.91 16 34 H 0.08 2.87 8.04 -2.39 -0.02 2.85 16 35 H 0.09 3.04 6.24 -2.39 -0.01 3.02 16 36 H 0.38 13.59 8.98 -74.05 -0.66 12.93 16 37 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 38 H 0.04 2.03 7.66 -2.38 -0.02 2.02 16 39 H 0.06 2.25 8.05 -2.39 -0.02 2.23 16 40 H 0.15 1.39 6.90 -2.91 -0.02 1.37 16 41 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 42 H 0.15 1.43 8.06 -2.91 -0.02 1.40 16 43 H 0.15 1.58 8.04 -2.91 -0.02 1.55 16 Total: -1.00 -70.71 363.30 0.39 -70.32 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: -0.30 Total: 24.53 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: 5.20 Total: 7.73 kcal Atomic # 7 Polarization: -94.34 SS G_CDS: -4.77 Total: -99.11 kcal Atomic # 8 Polarization: -48.42 SS G_CDS: -1.37 Total: -49.79 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.70 Total: 47.42 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.08 Total: -1.10 kcal Total: -70.71 0.39 -70.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591896488.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.268 kcal (2) G-P(sol) polarization free energy of solvation -70.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds