Wall clock time and date at job start Tue Mar 31 2020 21:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.46694 * 2 1 4 4 C 1.50694 * 109.47193 * 239.99755 * 2 1 3 5 5 O 1.21292 * 120.00064 * 239.99699 * 4 2 1 6 6 N 1.34784 * 120.00222 * 60.00021 * 4 2 1 7 7 C 1.39976 * 119.99857 * 185.85021 * 6 4 2 8 8 C 1.38854 * 120.07688 * 24.71912 * 7 6 4 9 9 C 1.38110 * 119.94080 * 180.31415 * 8 7 6 10 10 C 1.38289 * 120.09621 * 359.42744 * 9 8 7 11 11 C 1.38266 * 120.14943 * 0.29965 * 10 9 8 12 12 C 1.38229 * 120.05368 * 359.97438 * 11 10 9 13 13 Cl 1.73597 * 120.04673 * 180.02562 * 12 11 10 14 14 N 1.46897 * 109.46950 * 119.99369 * 2 1 3 15 15 C 1.47843 * 111.00398 * 296.79595 * 14 2 1 16 16 C 1.54907 * 104.79696 * 213.63543 * 15 14 2 17 17 C 1.55137 * 101.65150 * 37.06907 * 16 15 14 18 18 O 1.42906 * 110.85610 * 82.79781 * 17 16 15 19 19 C 1.50704 * 110.70724 * 205.96214 * 17 16 15 20 20 H 1.07995 * 119.99652 * 113.59516 * 19 17 16 21 21 C 1.37876 * 119.99577 * 293.60003 * 19 17 16 22 22 N 1.31512 * 120.00480 * 359.97438 * 21 19 17 23 23 Si 1.86807 * 119.99428 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47081 * 90.00271 * 23 21 19 25 25 H 1.48506 * 109.46956 * 210.00322 * 23 21 19 26 26 H 1.48494 * 109.47138 * 329.99974 * 23 21 19 27 27 C 1.47441 * 111.00007 * 175.95119 * 14 2 1 28 28 H 1.09001 * 109.47605 * 305.01561 * 1 2 3 29 29 H 1.09006 * 109.47245 * 65.01639 * 1 2 3 30 30 H 1.09006 * 109.47143 * 185.01020 * 1 2 3 31 31 H 0.96998 * 119.99209 * 5.85679 * 6 4 2 32 32 H 1.08001 * 120.02509 * 0.02562 * 8 7 6 33 33 H 1.08001 * 119.95375 * 179.70707 * 9 8 7 34 34 H 1.08003 * 119.93374 * 180.27957 * 10 9 8 35 35 H 1.07990 * 119.97303 * 179.97438 * 11 10 9 36 36 H 1.09009 * 110.37246 * 332.46864 * 15 14 2 37 37 H 1.09000 * 110.37338 * 94.80643 * 15 14 2 38 38 H 1.08997 * 110.99233 * 278.97683 * 16 15 14 39 39 H 1.09006 * 110.98717 * 155.15681 * 16 15 14 40 40 H 0.96703 * 113.99667 * 66.31363 * 18 17 16 41 41 H 0.97001 * 120.00199 * 179.97438 * 22 21 19 42 42 H 1.09001 * 109.88815 * 242.66987 * 27 14 2 43 43 H 1.09008 * 109.88764 * 3.69110 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7297 -1.6966 -1.1190 6 7 1.7068 -0.2500 -2.4546 7 6 2.0692 -0.9766 -3.5948 8 6 2.2820 -2.3461 -3.5087 9 6 2.6459 -3.0592 -4.6341 10 6 2.7870 -2.4133 -5.8488 11 6 2.5705 -1.0508 -5.9400 12 6 2.2117 -0.3300 -4.8164 13 17 1.9393 1.3806 -4.9314 14 7 2.0196 -0.6924 1.1995 15 6 1.6096 0.0212 2.4277 16 6 2.7760 -0.2012 3.4225 17 6 4.0074 -0.1361 2.4811 18 8 4.3914 1.2189 2.2386 19 6 5.1595 -0.9196 3.0557 20 1 5.5073 -1.8122 2.5573 21 6 5.7692 -0.4967 4.2178 22 7 5.3458 0.5906 4.8245 23 14 7.1967 -1.4683 4.9304 24 1 8.4728 -0.9572 4.3685 25 1 7.2103 -1.3166 6.4076 26 1 7.0418 -2.9033 4.5816 27 6 3.4903 -0.7968 1.1860 28 1 -0.3634 0.5897 0.8416 29 1 -0.3634 0.4341 -0.9315 30 1 -0.3634 -1.0238 0.0898 31 1 1.2214 0.5849 -2.5454 32 1 2.1676 -2.8523 -2.5616 33 1 2.8161 -4.1236 -4.5664 34 1 3.0672 -2.9743 -6.7281 35 1 2.6819 -0.5492 -6.8899 36 1 1.4819 1.0845 2.2241 37 1 0.6872 -0.4037 2.8234 38 1 2.7010 -1.1780 3.9002 39 1 2.8112 0.5943 4.1670 40 1 4.7238 1.6796 3.0211 41 1 5.7746 0.8879 5.6423 42 1 3.7874 -1.8452 1.1604 43 1 3.8910 -0.2766 0.3159 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592146905.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:23 Heat of formation + Delta-G solvation = -49.795697 kcal Electronic energy + Delta-G solvation = -27506.863133 eV Core-core repulsion = 23578.096025 eV Total energy + Delta-G solvation = -3928.767108 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.84632 -39.12869 -37.83348 -36.66719 -35.01371 -34.87720 -32.08305 -32.02076 -30.90578 -29.58255 -28.43886 -27.72537 -24.50788 -24.38967 -23.18126 -22.32005 -20.52299 -19.79279 -19.48655 -18.08712 -17.16349 -16.89271 -16.72189 -15.71521 -15.37988 -14.91754 -14.78541 -14.66623 -14.33288 -14.15279 -13.89004 -13.82940 -13.47578 -13.02474 -12.43561 -12.42561 -12.26817 -11.95547 -11.85171 -11.73447 -11.68860 -11.58720 -11.22469 -11.19877 -11.18441 -10.89093 -10.66629 -10.61632 -10.42036 -10.29191 -9.91890 -9.50307 -9.20006 -8.97216 -8.58291 -8.22998 -8.08102 -7.70273 -6.18666 -4.24594 0.92656 1.10433 1.87982 2.63255 2.84133 3.25730 3.32409 3.37218 3.54463 4.33045 4.45611 4.53205 4.62621 4.81630 5.05299 5.07864 5.11717 5.20853 5.24521 5.32897 5.55616 5.65451 5.71400 5.79791 5.94651 5.99552 6.05225 6.10782 6.14963 6.21601 6.28430 6.33035 6.46576 6.53744 6.73968 7.04518 7.10650 7.20294 7.41554 7.50963 7.62674 7.68307 7.85559 8.13129 8.18949 8.77288 9.42772 9.54068 10.88756 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.015799 B = 0.003023 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.787821 B = 9259.177489 C = 9860.634769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.061 3.939 3 H 0.070 0.930 4 C 0.521 3.479 5 O -0.487 6.487 6 N -0.675 5.675 7 C 0.173 3.827 8 C -0.123 4.123 9 C -0.091 4.091 10 C -0.135 4.135 11 C -0.090 4.090 12 C -0.076 4.076 13 Cl -0.070 7.070 14 N -0.510 5.510 15 C 0.043 3.957 16 C -0.131 4.131 17 C 0.232 3.768 18 O -0.594 6.594 19 C -0.528 4.528 20 H 0.063 0.937 21 C 0.069 3.931 22 N -0.902 5.902 23 Si 0.900 3.100 24 H -0.279 1.279 25 H -0.286 1.286 26 H -0.272 1.272 27 C 0.074 3.926 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.411 0.589 32 H 0.157 0.843 33 H 0.132 0.868 34 H 0.130 0.870 35 H 0.134 0.866 36 H 0.038 0.962 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.383 0.617 41 H 0.266 0.734 42 H 0.086 0.914 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.036 -0.645 -17.780 20.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.051 4.051 3 H 0.088 0.912 4 C 0.309 3.691 5 O -0.358 6.358 6 N -0.320 5.320 7 C 0.076 3.924 8 C -0.143 4.143 9 C -0.110 4.110 10 C -0.154 4.154 11 C -0.109 4.109 12 C -0.106 4.106 13 Cl -0.041 7.041 14 N -0.235 5.235 15 C -0.084 4.084 16 C -0.170 4.170 17 C 0.191 3.809 18 O -0.404 6.404 19 C -0.566 4.566 20 H 0.081 0.919 21 C -0.132 4.132 22 N -0.542 5.542 23 Si 0.728 3.272 24 H -0.205 1.205 25 H -0.211 1.211 26 H -0.197 1.197 27 C -0.053 4.053 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.248 0.752 32 H 0.174 0.826 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.152 0.848 36 H 0.057 0.943 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.235 0.765 41 H 0.076 0.924 42 H 0.104 0.896 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -10.956 -1.731 -18.045 21.182 hybrid contribution 1.097 1.192 0.916 1.861 sum -9.859 -0.539 -17.130 19.772 Atomic orbital electron populations 1.21799 0.92315 1.03529 1.02065 1.21745 0.96842 0.96655 0.89870 0.91206 1.20933 0.79296 0.85083 0.83787 1.90695 1.34093 1.25224 1.85817 1.43732 1.57678 1.26175 1.04438 1.17584 0.98367 0.91271 0.85170 1.21510 1.00579 0.91267 1.00960 1.21203 0.97393 1.00450 0.91935 1.21071 1.02301 0.93761 0.98285 1.20839 0.98933 0.94183 0.96938 1.20674 1.10031 0.84992 0.94867 1.98359 1.95088 1.12441 1.98246 1.63694 1.13183 1.47137 0.99492 1.23104 0.99343 0.95439 0.90527 1.23170 0.94419 1.01782 0.97601 1.19821 0.91226 0.80592 0.89218 1.86071 1.86303 1.26956 1.41063 1.21627 1.15984 1.10702 1.08314 0.91904 1.25001 0.97021 0.95068 0.96150 1.69583 1.41809 1.23423 1.19409 0.86458 0.82315 0.80511 0.77934 1.20549 1.21135 1.19697 1.22782 0.83957 1.01018 0.97569 0.91060 0.92425 0.91072 0.75215 0.82568 0.85055 0.85184 0.84809 0.94320 0.91690 0.91631 0.90760 0.76516 0.92359 0.89606 0.93991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.00 37.16 0.33 -1.31 16 2 C 0.06 0.96 2.15 -68.87 -0.15 0.82 16 3 H 0.07 1.12 8.01 -51.93 -0.42 0.71 16 4 C 0.52 8.32 6.28 -10.98 -0.07 8.25 16 5 O -0.49 -9.32 11.60 5.55 0.06 -9.25 16 6 N -0.67 -8.69 5.00 -9.83 -0.05 -8.74 16 7 C 0.17 2.24 6.43 -83.64 -0.54 1.70 16 8 C -0.12 -1.60 8.72 -39.40 -0.34 -1.94 16 9 C -0.09 -0.95 10.04 -39.61 -0.40 -1.34 16 10 C -0.13 -1.22 10.04 -39.55 -0.40 -1.61 16 11 C -0.09 -0.86 9.83 -39.57 -0.39 -1.25 16 12 C -0.08 -0.87 6.34 -39.32 -0.25 -1.11 16 13 Cl -0.07 -0.72 27.78 -51.86 -1.44 -2.17 16 14 N -0.51 -9.86 4.87 -224.68 -1.09 -10.95 16 15 C 0.04 0.82 5.58 -2.30 -0.01 0.80 16 16 C -0.13 -3.01 5.67 -24.59 -0.14 -3.15 16 17 C 0.23 5.86 0.85 -89.95 -0.08 5.79 16 18 O -0.59 -15.64 13.09 -35.23 -0.46 -16.10 16 19 C -0.53 -14.54 8.21 -34.44 -0.28 -14.83 16 20 H 0.06 1.75 7.53 -52.49 -0.40 1.36 16 21 C 0.07 1.85 5.28 -17.82 -0.09 1.76 16 22 N -0.90 -24.24 10.69 55.43 0.59 -23.64 16 23 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 27 C 0.07 1.70 4.49 -2.84 -0.01 1.69 16 28 H 0.07 0.80 7.44 -51.93 -0.39 0.41 16 29 H 0.06 0.52 7.56 -51.93 -0.39 0.13 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.41 4.35 7.31 -40.82 -0.30 4.05 16 32 H 0.16 2.31 5.80 -52.49 -0.30 2.00 16 33 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.13 0.82 8.06 -52.48 -0.42 0.39 16 35 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.04 0.71 7.70 -51.92 -0.40 0.31 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.06 1.56 8.04 -51.93 -0.42 1.14 16 39 H 0.07 1.78 7.76 -51.93 -0.40 1.38 16 40 H 0.38 10.28 6.98 45.56 0.32 10.60 16 41 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 42 H 0.09 2.11 7.50 -51.93 -0.39 1.72 16 43 H 0.04 1.00 6.57 -51.92 -0.34 0.66 16 LS Contribution 359.77 15.07 5.42 5.42 Total: -1.00 -29.81 359.77 -9.88 -39.69 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -5.07 Total: 15.41 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -2.82 Total: -5.75 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: -0.55 Total: -43.34 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: -0.40 Total: -25.35 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.44 Total: -2.17 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.81 -9.88 -39.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592146905.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.108 kcal (2) G-P(sol) polarization free energy of solvation -29.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds