Wall clock time and date at job start Tue Mar 31 2020 21:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.46694 * 2 1 4 4 C 1.50694 * 109.47193 * 239.99755 * 2 1 3 5 5 O 1.21292 * 120.00064 * 239.99699 * 4 2 1 6 6 N 1.34784 * 120.00222 * 60.00021 * 4 2 1 7 7 C 1.39976 * 119.99857 * 185.85021 * 6 4 2 8 8 C 1.38854 * 120.07688 * 24.71912 * 7 6 4 9 9 C 1.38110 * 119.94080 * 180.31415 * 8 7 6 10 10 C 1.38289 * 120.09621 * 359.42744 * 9 8 7 11 11 C 1.38266 * 120.14943 * 0.29965 * 10 9 8 12 12 C 1.38229 * 120.05368 * 359.97438 * 11 10 9 13 13 Cl 1.73597 * 120.04673 * 180.02562 * 12 11 10 14 14 N 1.46897 * 109.46950 * 119.99369 * 2 1 3 15 15 C 1.47843 * 111.00398 * 296.79595 * 14 2 1 16 16 C 1.54907 * 104.79696 * 213.63543 * 15 14 2 17 17 C 1.55137 * 101.65150 * 37.06907 * 16 15 14 18 18 O 1.42906 * 110.85610 * 82.79781 * 17 16 15 19 19 C 1.50704 * 110.70724 * 205.96214 * 17 16 15 20 20 H 1.07995 * 119.99652 * 113.59516 * 19 17 16 21 21 C 1.37876 * 119.99577 * 293.60003 * 19 17 16 22 22 N 1.31512 * 120.00480 * 359.97438 * 21 19 17 23 23 Si 1.86807 * 119.99428 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47081 * 90.00271 * 23 21 19 25 25 H 1.48506 * 109.46956 * 210.00322 * 23 21 19 26 26 H 1.48494 * 109.47138 * 329.99974 * 23 21 19 27 27 C 1.47441 * 111.00007 * 175.95119 * 14 2 1 28 28 H 1.09001 * 109.47605 * 305.01561 * 1 2 3 29 29 H 1.09006 * 109.47245 * 65.01639 * 1 2 3 30 30 H 1.09006 * 109.47143 * 185.01020 * 1 2 3 31 31 H 0.96998 * 119.99209 * 5.85679 * 6 4 2 32 32 H 1.08001 * 120.02509 * 0.02562 * 8 7 6 33 33 H 1.08001 * 119.95375 * 179.70707 * 9 8 7 34 34 H 1.08003 * 119.93374 * 180.27957 * 10 9 8 35 35 H 1.07990 * 119.97303 * 179.97438 * 11 10 9 36 36 H 1.09009 * 110.37246 * 332.46864 * 15 14 2 37 37 H 1.09000 * 110.37338 * 94.80643 * 15 14 2 38 38 H 1.08997 * 110.99233 * 278.97683 * 16 15 14 39 39 H 1.09006 * 110.98717 * 155.15681 * 16 15 14 40 40 H 0.96703 * 113.99667 * 66.31363 * 18 17 16 41 41 H 0.97001 * 120.00199 * 179.97438 * 22 21 19 42 42 H 1.09001 * 109.88815 * 242.66987 * 27 14 2 43 43 H 1.09008 * 109.88764 * 3.69110 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7297 -1.6966 -1.1190 6 7 1.7068 -0.2500 -2.4546 7 6 2.0692 -0.9766 -3.5948 8 6 2.2820 -2.3461 -3.5087 9 6 2.6459 -3.0592 -4.6341 10 6 2.7870 -2.4133 -5.8488 11 6 2.5705 -1.0508 -5.9400 12 6 2.2117 -0.3300 -4.8164 13 17 1.9393 1.3806 -4.9314 14 7 2.0196 -0.6924 1.1995 15 6 1.6096 0.0212 2.4277 16 6 2.7760 -0.2012 3.4225 17 6 4.0074 -0.1361 2.4811 18 8 4.3914 1.2189 2.2386 19 6 5.1595 -0.9196 3.0557 20 1 5.5073 -1.8122 2.5573 21 6 5.7692 -0.4967 4.2178 22 7 5.3458 0.5906 4.8245 23 14 7.1967 -1.4683 4.9304 24 1 8.4728 -0.9572 4.3685 25 1 7.2103 -1.3166 6.4076 26 1 7.0418 -2.9033 4.5816 27 6 3.4903 -0.7968 1.1860 28 1 -0.3634 0.5897 0.8416 29 1 -0.3634 0.4341 -0.9315 30 1 -0.3634 -1.0238 0.0898 31 1 1.2214 0.5849 -2.5454 32 1 2.1676 -2.8523 -2.5616 33 1 2.8161 -4.1236 -4.5664 34 1 3.0672 -2.9743 -6.7281 35 1 2.6819 -0.5492 -6.8899 36 1 1.4819 1.0845 2.2241 37 1 0.6872 -0.4037 2.8234 38 1 2.7010 -1.1780 3.9002 39 1 2.8112 0.5943 4.1670 40 1 4.7238 1.6796 3.0211 41 1 5.7746 0.8879 5.6423 42 1 3.7874 -1.8452 1.1604 43 1 3.8910 -0.2766 0.3159 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592146905.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:22 Heat of formation + Delta-G solvation = -70.777397 kcal Electronic energy + Delta-G solvation = -27507.772968 eV Core-core repulsion = 23578.096025 eV Total energy + Delta-G solvation = -3929.676943 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.99770 -40.37407 -39.25974 -37.50051 -36.73937 -36.00244 -34.15020 -33.51840 -31.73929 -30.64140 -30.09577 -29.40496 -26.33493 -25.63952 -24.11132 -23.33030 -21.94776 -21.50967 -20.95572 -19.18321 -19.08048 -18.16341 -17.64120 -16.97499 -16.86064 -16.79715 -16.10089 -15.98760 -15.60117 -15.57757 -15.16304 -14.77168 -14.71418 -14.31823 -14.07680 -13.79046 -13.60818 -13.37464 -13.26349 -13.11768 -12.95334 -12.73020 -12.64503 -12.56173 -12.51501 -12.43151 -12.29559 -12.09438 -11.99331 -11.83428 -11.66100 -11.19016 -10.71816 -10.62613 -10.11216 -9.82933 -9.30564 -9.15227 -8.24784 -6.38869 0.05882 0.24825 1.03156 1.37851 1.39622 1.47086 1.49984 1.77545 2.36833 2.69076 2.96644 3.02549 3.45048 3.75904 3.86915 3.93920 4.06533 4.09960 4.25654 4.32035 4.34887 4.38006 4.40546 4.49354 4.56815 4.69567 4.82505 4.83429 4.88374 5.06484 5.17291 5.20112 5.21607 5.28174 5.34867 5.47076 5.49624 5.54510 5.78563 5.86931 5.89700 6.01544 6.17129 6.28841 6.63915 6.96712 7.31522 7.42290 8.80697 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.015799 B = 0.003023 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.787821 B = 9259.177489 C = 9860.634769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.058 3.942 3 H 0.070 0.930 4 C 0.520 3.480 5 O -0.528 6.528 6 N -0.661 5.661 7 C 0.146 3.854 8 C -0.145 4.145 9 C -0.095 4.095 10 C -0.123 4.123 11 C -0.089 4.089 12 C -0.082 4.082 13 Cl -0.063 7.063 14 N -0.513 5.513 15 C 0.054 3.946 16 C -0.125 4.125 17 C 0.217 3.783 18 O -0.599 6.599 19 C -0.561 4.561 20 H 0.046 0.954 21 C 0.032 3.968 22 N -0.912 5.912 23 Si 0.959 3.041 24 H -0.277 1.277 25 H -0.275 1.275 26 H -0.274 1.274 27 C 0.092 3.908 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.421 0.579 32 H 0.131 0.869 33 H 0.150 0.850 34 H 0.166 0.834 35 H 0.161 0.839 36 H 0.049 0.951 37 H 0.095 0.905 38 H 0.050 0.950 39 H 0.060 0.940 40 H 0.378 0.622 41 H 0.271 0.729 42 H 0.060 0.940 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.033 -0.362 -19.474 22.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.054 4.054 3 H 0.088 0.912 4 C 0.308 3.692 5 O -0.403 6.403 6 N -0.307 5.307 7 C 0.050 3.950 8 C -0.165 4.165 9 C -0.113 4.113 10 C -0.142 4.142 11 C -0.108 4.108 12 C -0.111 4.111 13 Cl -0.035 7.035 14 N -0.238 5.238 15 C -0.072 4.072 16 C -0.163 4.163 17 C 0.177 3.823 18 O -0.408 6.408 19 C -0.599 4.599 20 H 0.065 0.935 21 C -0.168 4.168 22 N -0.552 5.552 23 Si 0.784 3.216 24 H -0.203 1.203 25 H -0.200 1.200 26 H -0.199 1.199 27 C -0.035 4.035 28 H 0.102 0.898 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.260 0.740 32 H 0.149 0.851 33 H 0.168 0.832 34 H 0.183 0.817 35 H 0.178 0.822 36 H 0.068 0.932 37 H 0.113 0.887 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.229 0.771 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -11.989 -1.419 -19.773 23.168 hybrid contribution 1.422 1.107 1.328 2.238 sum -10.567 -0.313 -18.445 21.260 Atomic orbital electron populations 1.21806 0.88796 1.03917 1.04347 1.21914 0.99465 0.95879 0.88186 0.91240 1.21001 0.78867 0.84603 0.84748 1.90690 1.36059 1.27082 1.86462 1.43482 1.57167 1.26303 1.03725 1.17746 1.00145 0.91477 0.85609 1.21449 1.02294 0.91786 1.01007 1.21481 0.96683 1.01440 0.91739 1.21483 1.00244 0.93728 0.98719 1.21248 0.97608 0.94546 0.97359 1.20823 1.10017 0.85516 0.94759 1.98360 1.95056 1.11851 1.98198 1.63635 1.10434 1.48433 1.01260 1.23064 0.98672 0.96353 0.89154 1.22961 0.95298 1.00395 0.97684 1.20027 0.91636 0.79839 0.90795 1.86058 1.86424 1.27488 1.40879 1.21850 1.17749 1.10989 1.09325 0.93544 1.25646 0.99036 0.95973 0.96164 1.69644 1.42277 1.23814 1.19450 0.85552 0.79375 0.79030 0.77632 1.20289 1.19953 1.19882 1.22392 0.86554 0.98850 0.95740 0.89802 0.89338 0.91418 0.73979 0.85103 0.83243 0.81673 0.82180 0.93238 0.88669 0.93079 0.92089 0.77111 0.91952 0.92165 0.95654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 9.00 71.98 0.65 -2.15 16 2 C 0.06 1.78 2.15 44.17 0.10 1.88 16 3 H 0.07 2.18 8.01 -2.38 -0.02 2.16 16 4 C 0.52 16.90 6.28 87.65 0.55 17.45 16 5 O -0.53 -21.30 11.60 -3.07 -0.04 -21.33 16 6 N -0.66 -16.91 5.00 -303.40 -1.52 -18.42 16 7 C 0.15 3.75 6.43 38.16 0.25 4.00 16 8 C -0.14 -3.84 8.72 22.39 0.20 -3.65 16 9 C -0.09 -1.86 10.04 22.25 0.22 -1.64 16 10 C -0.12 -1.86 10.04 22.29 0.22 -1.64 16 11 C -0.09 -1.47 9.83 22.27 0.22 -1.25 16 12 C -0.08 -1.74 6.34 22.44 0.14 -1.60 16 13 Cl -0.06 -1.21 27.78 -2.72 -0.08 -1.28 16 14 N -0.51 -19.95 4.87 -864.74 -4.21 -24.16 16 15 C 0.05 2.01 5.58 86.77 0.48 2.50 16 16 C -0.12 -5.81 5.67 31.98 0.18 -5.63 16 17 C 0.22 11.34 0.85 -10.36 -0.01 11.33 16 18 O -0.60 -32.34 13.09 -148.98 -1.95 -34.29 16 19 C -0.56 -32.02 8.21 25.60 0.21 -31.81 16 20 H 0.05 2.72 7.53 -2.91 -0.02 2.70 16 21 C 0.03 1.75 5.28 84.65 0.45 2.20 16 22 N -0.91 -49.46 10.69 21.45 0.23 -49.23 16 23 Si 0.96 43.75 29.54 68.60 2.03 45.77 16 24 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 25 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 26 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 27 C 0.09 4.46 4.49 86.65 0.39 4.85 16 28 H 0.08 1.61 7.44 -2.39 -0.02 1.59 16 29 H 0.09 1.35 7.56 -2.38 -0.02 1.33 16 30 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.42 8.49 7.31 -92.71 -0.68 7.82 16 32 H 0.13 4.14 5.80 -2.91 -0.02 4.12 16 33 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 34 H 0.17 1.35 8.06 -2.91 -0.02 1.32 16 35 H 0.16 1.78 8.06 -2.92 -0.02 1.75 16 36 H 0.05 1.73 7.70 -2.38 -0.02 1.72 16 37 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 38 H 0.05 2.48 8.04 -2.39 -0.02 2.46 16 39 H 0.06 2.97 7.76 -2.38 -0.02 2.95 16 40 H 0.38 20.79 6.98 -74.05 -0.52 20.28 16 41 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 42 H 0.06 3.16 7.50 -2.39 -0.02 3.15 16 43 H 0.02 1.27 6.57 -2.38 -0.02 1.25 16 Total: -1.00 -67.07 359.77 -1.42 -68.49 By element: Atomic # 1 Polarization: 39.76 SS G_CDS: -0.14 Total: 39.62 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: 4.25 Total: -5.16 kcal Atomic # 7 Polarization: -86.32 SS G_CDS: -5.50 Total: -91.81 kcal Atomic # 8 Polarization: -53.64 SS G_CDS: -1.99 Total: -55.62 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -0.08 Total: -1.28 kcal Total: -67.07 -1.42 -68.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592146905.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.286 kcal (2) G-P(sol) polarization free energy of solvation -67.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds