Wall clock time and date at job start Tue Mar 31 2020 21:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.47580 * 2 1 4 4 C 1.50698 * 109.47023 * 239.99741 * 2 1 3 5 5 O 1.21289 * 120.00270 * 240.00076 * 4 2 1 6 6 N 1.34783 * 119.99766 * 60.00464 * 4 2 1 7 7 C 1.39971 * 119.99895 * 185.52523 * 6 4 2 8 8 C 1.38852 * 120.07537 * 24.83013 * 7 6 4 9 9 C 1.38117 * 119.94447 * 179.97438 * 8 7 6 10 10 C 1.38297 * 120.08992 * 0.02562 * 9 8 7 11 11 C 1.38263 * 120.15306 * 0.02562 * 10 9 8 12 12 C 1.38222 * 120.05285 * 359.95634 * 11 10 9 13 13 Cl 1.73600 * 120.04715 * 180.02562 * 12 11 10 14 14 N 1.46902 * 109.46666 * 120.00389 * 2 1 3 15 15 C 1.48541 * 110.99634 * 177.60297 * 14 2 1 16 16 C 1.54941 * 103.22444 * 159.72124 * 15 14 2 17 17 C 1.54595 * 102.92031 * 322.58288 * 16 15 14 18 18 O 1.42902 * 110.30825 * 263.04332 * 17 16 15 19 19 C 1.50699 * 110.30803 * 140.87717 * 17 16 15 20 20 H 1.08001 * 120.00129 * 244.28413 * 19 17 16 21 21 C 1.37882 * 119.99938 * 64.28370 * 19 17 16 22 22 N 1.31515 * 120.00184 * 0.02562 * 21 19 17 23 23 Si 1.86805 * 119.99788 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47036 * 89.99825 * 23 21 19 25 25 H 1.48503 * 109.46768 * 209.99769 * 23 21 19 26 26 H 1.48499 * 109.46936 * 329.99679 * 23 21 19 27 27 C 1.47902 * 110.99965 * 294.99384 * 14 2 1 28 28 H 1.09001 * 109.47377 * 300.00038 * 1 2 3 29 29 H 1.09001 * 109.47043 * 59.99771 * 1 2 3 30 30 H 1.08993 * 109.47580 * 179.97438 * 1 2 3 31 31 H 0.96998 * 119.99501 * 5.52857 * 6 4 2 32 32 H 1.07999 * 120.02942 * 359.97438 * 8 7 6 33 33 H 1.07999 * 119.95652 * 180.29581 * 9 8 7 34 34 H 1.08011 * 119.92477 * 179.97438 * 10 9 8 35 35 H 1.08000 * 119.97063 * 179.97438 * 11 10 9 36 36 H 1.09005 * 110.66415 * 278.14917 * 15 14 2 37 37 H 1.08998 * 110.67079 * 41.28549 * 15 14 2 38 38 H 1.09002 * 110.72190 * 204.22515 * 16 15 14 39 39 H 1.08998 * 110.87864 * 81.01703 * 16 15 14 40 40 H 0.96702 * 114.00206 * 295.71968 * 18 17 16 41 41 H 0.96994 * 119.99872 * 180.02562 * 22 21 19 42 42 H 1.08997 * 109.91994 * 333.51430 * 27 14 2 43 43 H 1.09000 * 109.91546 * 94.80572 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7296 -1.6966 -1.1192 6 7 1.7067 -0.2499 -2.4546 7 6 2.0750 -0.9730 -3.5951 8 6 2.2923 -2.3418 -3.5111 9 6 2.6551 -3.0527 -4.6383 10 6 2.8026 -2.4030 -5.8502 11 6 2.5882 -1.0399 -5.9380 12 6 2.2246 -0.3225 -4.8139 13 17 1.9548 1.3888 -4.9245 14 7 2.0195 -0.6926 1.1994 15 6 3.5033 -0.7629 1.2051 16 6 3.8406 -1.0125 2.6966 17 6 2.7913 -0.1518 3.4371 18 8 3.3530 1.1108 3.8009 19 6 2.2910 -0.8750 4.6608 20 1 1.2551 -1.1736 4.7259 21 6 3.1558 -1.1557 5.6975 22 7 4.4171 -0.7917 5.6185 23 14 2.5357 -2.0528 7.2141 24 1 2.6879 -3.5171 7.0198 25 1 3.3236 -1.6260 8.3983 26 1 1.1027 -1.7284 7.4298 27 6 1.6461 0.0441 2.4264 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.2172 0.5826 -2.5451 32 1 2.1777 -2.8502 -2.5651 33 1 2.8195 -4.1182 -4.5742 34 1 3.0868 -2.9615 -6.7299 35 1 2.7047 -0.5354 -6.8858 36 1 3.8515 -1.5913 0.5881 37 1 3.9343 0.1789 0.8656 38 1 4.8503 -0.6718 2.9260 39 1 3.7237 -2.0661 2.9503 40 1 4.0797 1.0497 4.4360 41 1 5.0254 -0.9895 6.3476 42 1 1.5266 1.1038 2.2014 43 1 0.7187 -0.3587 2.8335 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592146908.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:26 Heat of formation + Delta-G solvation = -48.390068 kcal Electronic energy + Delta-G solvation = -27273.596115 eV Core-core repulsion = 23344.889960 eV Total energy + Delta-G solvation = -3928.706155 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.90812 -39.15567 -37.87964 -36.73908 -35.10056 -34.93930 -32.16990 -32.04709 -30.97631 -29.67437 -28.13535 -27.70519 -25.17129 -24.02504 -23.13642 -22.23120 -20.74824 -19.99702 -19.23492 -18.20785 -17.21657 -16.94658 -16.79029 -15.80366 -15.51616 -14.92880 -14.79000 -14.73176 -14.50027 -13.96754 -13.88498 -13.76321 -13.40323 -13.12689 -12.76243 -12.45607 -12.24313 -11.99372 -11.91323 -11.86041 -11.73857 -11.44702 -11.35927 -11.21099 -11.13218 -10.87608 -10.70710 -10.55890 -10.45679 -10.29283 -9.91562 -9.49008 -9.13432 -9.03955 -8.56340 -8.31962 -8.05066 -7.83193 -6.17117 -4.23061 0.85250 1.03339 1.80729 2.53424 2.75850 3.26306 3.33070 3.36639 3.46969 4.33451 4.40906 4.46504 4.55871 4.75231 4.98986 5.04948 5.12226 5.14266 5.17933 5.25041 5.56684 5.58588 5.73557 5.80343 5.88510 5.93258 6.06722 6.13073 6.16057 6.21496 6.25617 6.30009 6.38042 6.62857 6.70214 6.93771 7.09373 7.16697 7.29862 7.53617 7.63943 7.68129 7.86937 8.04516 8.18097 8.78111 9.43525 9.54402 10.90667 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.022982 B = 0.002617 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.068828 B =10697.974490 C =11151.853195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.057 3.943 3 H 0.067 0.933 4 C 0.522 3.478 5 O -0.490 6.490 6 N -0.674 5.674 7 C 0.171 3.829 8 C -0.123 4.123 9 C -0.091 4.091 10 C -0.134 4.134 11 C -0.090 4.090 12 C -0.076 4.076 13 Cl -0.070 7.070 14 N -0.492 5.492 15 C 0.029 3.971 16 C -0.118 4.118 17 C 0.243 3.757 18 O -0.596 6.596 19 C -0.527 4.527 20 H 0.062 0.938 21 C 0.067 3.933 22 N -0.899 5.899 23 Si 0.901 3.099 24 H -0.279 1.279 25 H -0.286 1.286 26 H -0.273 1.273 27 C 0.056 3.944 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.411 0.589 32 H 0.157 0.843 33 H 0.132 0.868 34 H 0.131 0.869 35 H 0.134 0.866 36 H 0.088 0.912 37 H 0.025 0.975 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.384 0.616 41 H 0.266 0.734 42 H 0.037 0.963 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.292 0.864 -22.115 22.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.056 4.056 3 H 0.084 0.916 4 C 0.310 3.690 5 O -0.361 6.361 6 N -0.320 5.320 7 C 0.075 3.925 8 C -0.143 4.143 9 C -0.110 4.110 10 C -0.153 4.153 11 C -0.109 4.109 12 C -0.105 4.105 13 Cl -0.041 7.041 14 N -0.217 5.217 15 C -0.098 4.098 16 C -0.157 4.157 17 C 0.203 3.797 18 O -0.406 6.406 19 C -0.565 4.565 20 H 0.080 0.920 21 C -0.134 4.134 22 N -0.540 5.540 23 Si 0.728 3.272 24 H -0.205 1.205 25 H -0.212 1.212 26 H -0.198 1.198 27 C -0.071 4.071 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.248 0.752 32 H 0.175 0.825 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.152 0.848 36 H 0.107 0.893 37 H 0.044 0.956 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.236 0.764 41 H 0.076 0.924 42 H 0.055 0.945 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.364 0.027 -22.239 22.877 hybrid contribution 0.326 0.788 1.074 1.372 sum -5.037 0.816 -21.165 21.772 Atomic orbital electron populations 1.21789 0.91976 1.03543 1.02471 1.21796 0.97431 0.96290 0.90068 0.91552 1.20961 0.79229 0.85019 0.83770 1.90643 1.34496 1.25245 1.85756 1.43739 1.57326 1.26489 1.04403 1.17583 0.98464 0.91296 0.85193 1.21527 1.00503 0.91288 1.00986 1.21218 0.97391 1.00462 0.91922 1.21085 1.02191 0.93729 0.98327 1.20845 0.98918 0.94217 0.96927 1.20680 1.09936 0.84991 0.94930 1.98361 1.95142 1.12341 1.98280 1.64830 1.11613 1.45939 0.99331 1.23485 0.86536 0.99675 1.00059 1.22987 1.00043 1.01683 0.90941 1.19347 0.87829 0.81326 0.91200 1.86065 1.55572 1.32263 1.66711 1.21679 0.96449 1.36681 1.01730 0.91965 1.25017 0.94721 0.95063 0.98601 1.69618 1.03590 1.47619 1.33165 0.86453 0.78897 0.79847 0.81953 1.20537 1.21194 1.19830 1.22912 1.00049 0.94962 0.89202 0.90641 0.92416 0.91032 0.75156 0.82515 0.85021 0.85148 0.84780 0.89344 0.95631 0.91805 0.91337 0.76418 0.92357 0.94475 0.90026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.08 37.16 0.34 -1.36 16 2 C 0.06 0.86 2.19 -68.87 -0.15 0.71 16 3 H 0.07 0.97 7.96 -51.93 -0.41 0.56 16 4 C 0.52 7.75 6.69 -10.98 -0.07 7.68 16 5 O -0.49 -8.69 11.05 5.55 0.06 -8.63 16 6 N -0.67 -8.01 5.04 -9.83 -0.05 -8.06 16 7 C 0.17 2.05 6.43 -83.65 -0.54 1.52 16 8 C -0.12 -1.49 8.72 -39.40 -0.34 -1.84 16 9 C -0.09 -0.88 10.04 -39.60 -0.40 -1.27 16 10 C -0.13 -1.11 10.04 -39.55 -0.40 -1.50 16 11 C -0.09 -0.79 9.82 -39.58 -0.39 -1.18 16 12 C -0.08 -0.79 6.34 -39.32 -0.25 -1.04 16 13 Cl -0.07 -0.66 27.79 -51.86 -1.44 -2.10 16 14 N -0.49 -9.54 4.93 -223.88 -1.10 -10.65 16 15 C 0.03 0.62 5.49 -1.89 -0.01 0.61 16 16 C -0.12 -2.83 5.49 -24.87 -0.14 -2.97 16 17 C 0.24 6.07 0.99 -90.42 -0.09 5.98 16 18 O -0.60 -15.59 12.93 -35.23 -0.46 -16.04 16 19 C -0.53 -14.20 8.10 -34.44 -0.28 -14.48 16 20 H 0.06 1.67 7.34 -52.49 -0.39 1.28 16 21 C 0.07 1.80 5.26 -17.82 -0.09 1.71 16 22 N -0.90 -24.29 10.88 55.43 0.60 -23.68 16 23 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 27 C 0.06 1.19 5.02 -2.75 -0.01 1.18 16 28 H 0.07 0.93 7.35 -51.93 -0.38 0.55 16 29 H 0.06 0.52 7.70 -51.93 -0.40 0.12 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.41 3.98 7.36 -40.82 -0.30 3.68 16 32 H 0.16 2.19 5.79 -52.49 -0.30 1.89 16 33 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 35 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 36 H 0.09 1.87 6.19 -51.93 -0.32 1.55 16 37 H 0.03 0.53 8.02 -51.93 -0.42 0.11 16 38 H 0.06 1.59 8.05 -51.93 -0.42 1.18 16 39 H 0.07 1.76 7.85 -51.93 -0.41 1.35 16 40 H 0.38 10.27 7.05 45.56 0.32 10.59 16 41 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 42 H 0.04 0.76 7.47 -51.93 -0.39 0.38 16 43 H 0.08 1.73 7.39 -51.93 -0.38 1.35 16 LS Contribution 359.34 15.07 5.42 5.42 Total: -1.00 -29.49 359.34 -9.84 -39.33 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -2.82 Total: -6.27 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: -0.55 Total: -42.39 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.39 Total: -24.67 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.44 Total: -2.10 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.49 -9.84 -39.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592146908.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.057 kcal (2) G-P(sol) polarization free energy of solvation -29.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds