Wall clock time and date at job start Tue Mar 31 2020 21:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47119 * 2 1 4 4 C 1.50695 * 109.47277 * 239.99499 * 2 1 3 5 5 O 1.21288 * 120.00047 * 240.00599 * 4 2 1 6 6 N 1.34778 * 120.00026 * 60.00152 * 4 2 1 7 7 C 1.39974 * 119.99988 * 184.64932 * 6 4 2 8 8 C 1.38866 * 120.05549 * 324.66323 * 7 6 4 9 9 C 1.38116 * 119.93700 * 179.71924 * 8 7 6 10 10 C 1.38379 * 120.06132 * 0.55999 * 9 8 7 11 11 Cl 1.73598 * 119.94556 * 179.74075 * 10 9 8 12 12 C 1.38386 * 120.11402 * 359.71560 * 10 9 8 13 13 C 1.38117 * 120.05671 * 0.02562 * 12 10 9 14 14 N 1.46902 * 109.46631 * 119.99837 * 2 1 3 15 15 C 1.47898 * 110.99817 * 179.87278 * 14 2 1 16 16 C 1.53994 * 107.05840 * 214.15232 * 15 14 2 17 17 C 1.54596 * 105.13974 * 1.22759 * 16 15 14 18 18 O 1.42904 * 110.71982 * 263.42078 * 17 16 15 19 19 C 1.50698 * 110.72260 * 140.31514 * 17 16 15 20 20 H 1.08002 * 119.99865 * 241.44823 * 19 17 16 21 21 C 1.37871 * 120.00311 * 61.45558 * 19 17 16 22 22 N 1.31519 * 119.99808 * 359.97438 * 21 19 17 23 23 Si 1.86799 * 120.00318 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47263 * 59.99618 * 23 21 19 25 25 H 1.48504 * 109.47355 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46928 * 300.00053 * 23 21 19 27 27 C 1.48528 * 111.00115 * 62.47521 * 14 2 1 28 28 H 1.09008 * 109.46586 * 60.00167 * 1 2 3 29 29 H 1.08994 * 109.47119 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46874 * 300.00759 * 1 2 3 31 31 H 0.96996 * 120.00308 * 4.64561 * 6 4 2 32 32 H 1.08000 * 120.03401 * 359.97438 * 8 7 6 33 33 H 1.07999 * 119.96767 * 180.29833 * 9 8 7 34 34 H 1.07994 * 119.97523 * 180.02562 * 12 10 9 35 35 H 1.07998 * 120.02989 * 180.02562 * 13 12 10 36 36 H 1.08996 * 109.91768 * 333.50859 * 15 14 2 37 37 H 1.09004 * 109.91775 * 94.80101 * 15 14 2 38 38 H 1.09001 * 110.30651 * 120.14045 * 16 15 14 39 39 H 1.09001 * 110.30809 * 242.30824 * 16 15 14 40 40 H 0.96702 * 113.99977 * 298.54154 * 18 17 16 41 41 H 0.97003 * 119.99953 * 180.02562 * 22 21 19 42 42 H 1.08997 * 110.66670 * 278.15331 * 27 14 2 43 43 H 1.08993 * 110.66964 * 41.29083 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.7296 -1.6967 -1.1190 6 7 1.7069 -0.2501 -2.4545 7 6 2.0912 -0.9638 -3.5957 8 6 3.3063 -1.6356 -3.6194 9 6 3.6805 -2.3439 -4.7445 10 6 2.8510 -2.3749 -5.8517 11 17 3.3273 -3.2606 -7.2668 12 6 1.6421 -1.7016 -5.8327 13 6 1.2607 -0.9962 -4.7082 14 7 2.0196 -0.6925 1.1995 15 6 3.4981 -0.7149 1.2322 16 6 3.9153 -2.0459 1.8847 17 6 2.5892 -2.7809 2.1865 18 8 2.1890 -2.5659 3.5414 19 6 2.7185 -4.2543 1.8980 20 1 2.0927 -4.7146 1.1477 21 6 3.6355 -5.0148 2.5920 22 7 4.3978 -4.4542 3.5054 23 14 3.7953 -6.8413 2.2349 24 1 4.1712 -7.0365 0.8115 25 1 4.8443 -7.4266 3.1080 26 1 2.4978 -7.5130 2.5007 27 6 1.5928 -2.1151 1.2043 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.2062 0.5757 -2.5448 32 1 3.9563 -1.6076 -2.7574 33 1 4.6232 -2.8705 -4.7618 34 1 0.9963 -1.7277 -6.6979 35 1 0.3170 -0.4713 -4.6936 36 1 3.8928 -0.6588 0.2178 37 1 3.8691 0.1215 1.8247 38 1 4.5236 -2.6310 1.1950 39 1 4.4631 -1.8590 2.8084 40 1 2.8196 -2.8976 4.1952 41 1 5.0433 -4.9892 3.9933 42 1 0.5706 -2.2089 1.5708 43 1 1.6869 -2.5484 0.2086 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592148941.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:35 Heat of formation + Delta-G solvation = -66.166717 kcal Electronic energy + Delta-G solvation = -27795.880192 eV Core-core repulsion = 23866.403184 eV Total energy + Delta-G solvation = -3929.477009 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.14506 -40.38261 -39.02561 -37.50783 -36.53987 -35.80805 -34.15709 -33.47096 -32.10013 -30.44583 -29.94741 -29.11246 -26.83406 -25.20189 -24.08600 -23.23617 -22.16399 -21.52229 -20.91741 -19.09036 -18.83217 -18.15114 -17.71554 -17.03355 -16.88267 -16.64877 -16.13678 -15.95233 -15.67904 -15.28253 -15.08298 -14.64688 -14.51566 -14.50048 -14.29658 -13.89924 -13.51895 -13.28605 -13.23631 -13.05012 -12.99378 -12.89126 -12.64685 -12.53837 -12.42692 -12.32284 -12.15302 -11.91883 -11.87931 -11.66578 -11.28473 -11.05484 -10.95208 -10.59380 -10.08915 -10.07753 -9.17170 -9.11514 -8.21481 -6.35325 0.01413 0.26701 1.13992 1.36168 1.37073 1.45036 1.47387 1.98954 2.36386 2.63743 3.00381 3.06485 3.64829 3.82498 3.88533 3.95178 3.97363 4.12269 4.23663 4.27438 4.34370 4.43425 4.48214 4.56489 4.76273 4.83506 4.86995 4.91148 4.92683 4.98981 5.11702 5.21462 5.23435 5.28985 5.32358 5.38745 5.54439 5.60007 5.73283 5.83726 5.89549 6.08524 6.24686 6.41698 6.68374 7.11241 7.35023 7.49001 8.84018 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010995 B = 0.003660 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.999784 B = 7647.739626 C = 9550.551157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.053 3.947 3 H 0.140 0.860 4 C 0.478 3.522 5 O -0.537 6.537 6 N -0.656 5.656 7 C 0.143 3.857 8 C -0.131 4.131 9 C -0.104 4.104 10 C -0.061 4.061 11 Cl -0.073 7.073 12 C -0.089 4.089 13 C -0.123 4.123 14 N -0.489 5.489 15 C 0.044 3.956 16 C -0.108 4.108 17 C 0.242 3.758 18 O -0.589 6.589 19 C -0.557 4.557 20 H 0.043 0.957 21 C 0.031 3.969 22 N -0.911 5.911 23 Si 0.953 3.047 24 H -0.279 1.279 25 H -0.275 1.275 26 H -0.271 1.271 27 C 0.058 3.942 28 H 0.103 0.897 29 H 0.040 0.960 30 H 0.083 0.917 31 H 0.431 0.569 32 H 0.120 0.880 33 H 0.132 0.868 34 H 0.163 0.837 35 H 0.172 0.828 36 H 0.048 0.952 37 H 0.076 0.924 38 H 0.029 0.971 39 H 0.042 0.958 40 H 0.370 0.630 41 H 0.268 0.732 42 H 0.059 0.941 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.972 13.088 -18.587 23.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.059 4.059 3 H 0.158 0.842 4 C 0.266 3.734 5 O -0.413 6.413 6 N -0.304 5.304 7 C 0.048 3.952 8 C -0.152 4.152 9 C -0.123 4.123 10 C -0.088 4.088 11 Cl -0.044 7.044 12 C -0.108 4.108 13 C -0.143 4.143 14 N -0.211 5.211 15 C -0.084 4.084 16 C -0.147 4.147 17 C 0.203 3.797 18 O -0.397 6.397 19 C -0.595 4.595 20 H 0.061 0.939 21 C -0.170 4.170 22 N -0.551 5.551 23 Si 0.779 3.221 24 H -0.205 1.205 25 H -0.200 1.200 26 H -0.197 1.197 27 C -0.070 4.070 28 H 0.122 0.878 29 H 0.060 0.940 30 H 0.102 0.898 31 H 0.271 0.729 32 H 0.138 0.862 33 H 0.150 0.850 34 H 0.181 0.819 35 H 0.190 0.810 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.048 0.952 39 H 0.061 0.939 40 H 0.218 0.782 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.052 12.875 -18.247 23.419 hybrid contribution 1.428 -1.891 -0.409 2.405 sum -5.624 10.984 -18.656 22.368 Atomic orbital electron populations 1.21809 0.89765 1.02590 1.05020 1.22394 0.99315 1.00028 0.84210 0.84229 1.22798 0.79560 0.84852 0.86189 1.90812 1.37020 1.27221 1.86238 1.43630 1.56642 1.26977 1.03161 1.18053 0.92958 0.96132 0.88051 1.21218 0.96418 0.99471 0.98067 1.21028 1.00333 0.99231 0.91725 1.21025 0.97590 1.00869 0.89353 1.98360 1.92038 1.74743 1.39301 1.21174 0.94426 0.95557 0.99651 1.21205 1.00069 1.01506 0.91529 1.65141 1.08892 1.14025 1.33041 1.22824 0.88211 0.97873 0.99442 1.22535 0.99309 0.94699 0.98186 1.19496 0.89361 0.91256 0.79632 1.86117 1.51664 1.84025 1.17846 1.21788 1.20726 0.95592 1.21417 0.93884 1.25630 0.94352 1.02530 0.94455 1.69809 1.23249 1.37375 1.24622 0.85698 0.78052 0.80434 0.77936 1.20511 1.20007 1.19665 1.23175 0.97882 0.87458 0.98454 0.87816 0.94045 0.89834 0.72898 0.86207 0.84966 0.81943 0.81024 0.93344 0.90612 0.95245 0.93871 0.78157 0.92266 0.92279 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 9.01 71.98 0.65 -1.94 16 2 C 0.05 1.34 2.85 44.17 0.13 1.47 16 3 H 0.14 2.57 8.14 -2.39 -0.02 2.55 16 4 C 0.48 13.28 5.89 87.66 0.52 13.79 16 5 O -0.54 -20.89 9.20 -3.05 -0.03 -20.92 16 6 N -0.66 -12.34 5.20 -303.48 -1.58 -13.92 16 7 C 0.14 3.13 6.30 38.14 0.24 3.37 16 8 C -0.13 -3.63 8.69 22.39 0.19 -3.44 16 9 C -0.10 -2.61 9.82 22.27 0.22 -2.39 16 10 C -0.06 -1.30 6.32 22.34 0.14 -1.16 16 11 Cl -0.07 -1.46 28.95 -2.72 -0.08 -1.54 16 12 C -0.09 -1.47 9.82 22.28 0.22 -1.25 16 13 C -0.12 -1.91 9.97 22.39 0.22 -1.69 16 14 N -0.49 -18.16 5.30 -862.27 -4.57 -22.73 16 15 C 0.04 1.77 6.00 86.45 0.52 2.29 16 16 C -0.11 -5.49 5.26 31.47 0.17 -5.32 16 17 C 0.24 12.96 0.95 -10.33 -0.01 12.95 16 18 O -0.59 -32.74 13.09 -148.98 -1.95 -34.70 16 19 C -0.56 -32.57 8.14 25.60 0.21 -32.36 16 20 H 0.04 2.56 7.78 -2.91 -0.02 2.54 16 21 C 0.03 1.73 5.28 84.65 0.45 2.18 16 22 N -0.91 -51.74 11.00 21.45 0.24 -51.50 16 23 Si 0.95 45.25 29.54 68.60 2.03 47.27 16 24 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 26 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 27 C 0.06 2.62 4.26 86.65 0.37 2.99 16 28 H 0.10 1.04 7.68 -2.38 -0.02 1.02 16 29 H 0.04 1.01 7.00 -2.39 -0.02 0.99 16 30 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.43 4.06 8.39 -92.71 -0.78 3.28 16 32 H 0.12 4.01 6.24 -2.91 -0.02 4.00 16 33 H 0.13 3.21 8.06 -2.91 -0.02 3.19 16 34 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 35 H 0.17 1.34 8.06 -2.91 -0.02 1.31 16 36 H 0.05 1.90 5.64 -2.39 -0.01 1.89 16 37 H 0.08 2.76 8.14 -2.38 -0.02 2.74 16 38 H 0.03 1.62 7.84 -2.39 -0.02 1.60 16 39 H 0.04 2.27 7.98 -2.39 -0.02 2.25 16 40 H 0.37 20.93 7.46 -74.06 -0.55 20.38 16 41 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 42 H 0.06 2.69 7.67 -2.39 -0.02 2.68 16 43 H 0.07 3.13 5.06 -2.39 -0.01 3.12 16 Total: -1.00 -72.29 357.81 -1.99 -74.28 By element: Atomic # 1 Polarization: 34.54 SS G_CDS: -0.27 Total: 34.27 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: 4.22 Total: -10.51 kcal Atomic # 7 Polarization: -82.24 SS G_CDS: -5.91 Total: -88.15 kcal Atomic # 8 Polarization: -53.64 SS G_CDS: -1.98 Total: -55.62 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -0.08 Total: -1.54 kcal Total: -72.29 -1.99 -74.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148941.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.110 kcal (2) G-P(sol) polarization free energy of solvation -72.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds