Wall clock time and date at job start Tue Mar 31 2020 20:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09009 * 109.46973 * 2 1 4 4 C 1.50696 * 109.47005 * 119.99672 * 2 1 3 5 5 H 1.07999 * 119.99837 * 120.00372 * 4 2 1 6 6 C 1.37883 * 120.00276 * 300.00021 * 4 2 1 7 7 N 1.31515 * 119.99735 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 119.99981 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46984 * 90.00277 * 8 6 4 10 10 H 1.48504 * 109.47150 * 209.99855 * 8 6 4 11 11 H 1.48493 * 109.47396 * 330.00130 * 8 6 4 12 12 N 1.46498 * 109.47130 * 239.99813 * 2 1 3 13 13 C 1.34779 * 119.99681 * 84.99864 * 12 2 1 14 14 O 1.21277 * 120.00468 * 0.02562 * 13 12 2 15 15 C 1.50701 * 119.99400 * 180.02562 * 13 12 2 16 16 H 1.09000 * 110.88918 * 303.80907 * 15 13 12 17 17 C 1.54622 * 110.97364 * 67.62213 * 15 13 12 18 18 C 1.51288 * 104.25884 * 142.69659 * 17 15 13 19 19 O 1.21292 * 124.94394 * 164.01414 * 18 17 15 20 20 N 1.34422 * 110.11250 * 344.14350 * 18 17 15 21 21 C 1.40022 * 124.34711 * 179.43126 * 20 18 17 22 22 C 1.38866 * 120.03547 * 354.20782 * 21 20 18 23 23 C 1.38137 * 119.99575 * 180.24770 * 22 21 20 24 24 C 1.38430 * 120.07082 * 359.72679 * 23 22 21 25 25 F 1.35092 * 119.96569 * 180.02562 * 24 23 22 26 26 C 1.38672 * 120.06834 * 0.02562 * 24 23 22 27 27 F 1.35098 * 120.00016 * 179.97438 * 26 24 23 28 28 C 1.38323 * 119.99837 * 359.97438 * 26 24 23 29 29 C 1.46764 * 111.29726 * 359.17529 * 20 18 17 30 30 H 1.09000 * 109.46911 * 60.00205 * 1 2 3 31 31 H 1.08997 * 109.46960 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47125 * 300.00578 * 1 2 3 33 33 H 0.97003 * 119.99993 * 179.97438 * 7 6 4 34 34 H 0.96994 * 119.99624 * 265.00160 * 12 2 1 35 35 H 1.09000 * 110.48960 * 261.59681 * 17 15 13 36 36 H 1.09001 * 110.48284 * 24.10279 * 17 15 13 37 37 H 1.07999 * 120.00627 * 0.02562 * 22 21 20 38 38 H 1.07995 * 119.96662 * 179.74611 * 23 22 21 39 39 H 1.08002 * 120.03306 * 179.97438 * 28 26 24 40 40 H 1.09003 * 110.24563 * 136.28110 * 29 20 18 41 41 H 1.08994 * 110.24119 * 258.27542 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2392 2.4828 7 7 0.9436 0.8304 2.6034 8 14 2.3225 -1.1193 4.0080 9 1 3.6305 -0.5437 4.4119 10 1 1.3445 -0.9487 5.1124 11 1 2.4881 -2.5651 3.7123 12 7 2.0184 -0.6906 -1.1961 13 6 2.1470 -0.0183 -2.3571 14 8 1.8590 1.1586 -2.4115 15 6 2.6488 -0.7289 -3.5877 16 1 3.6195 -1.1888 -3.4022 17 6 1.6241 -1.7781 -4.0774 18 6 1.7042 -1.7012 -5.5862 19 8 1.2703 -2.5389 -6.3486 20 7 2.3288 -0.5708 -5.9589 21 6 2.5745 -0.2053 -7.2881 22 6 2.2734 -1.0865 -8.3182 23 6 2.5208 -0.7271 -9.6289 24 6 3.0636 0.5132 -9.9174 25 9 3.3042 0.8626 -11.2000 26 6 3.3606 1.3974 -8.8912 27 9 3.8907 2.6073 -9.1743 28 6 3.1140 1.0404 -7.5778 29 6 2.7147 0.2340 -4.7938 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 0.7089 1.1616 3.4844 34 1 2.2490 -1.6317 -1.1525 35 1 1.9001 -2.7730 -3.7281 36 1 0.6214 -1.5199 -3.7368 37 1 1.8491 -2.0542 -8.0946 38 1 2.2903 -1.4144 -10.4294 39 1 3.3454 1.7285 -6.7781 40 1 3.7285 0.6148 -4.9176 41 1 2.0154 1.0587 -4.6568 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599220367.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:53 Heat of formation + Delta-G solvation = -146.831291 kcal Electronic energy + Delta-G solvation = -28375.660673 eV Core-core repulsion = 23890.889105 eV Total energy + Delta-G solvation = -4484.771567 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.55337 -49.62520 -42.46984 -40.55943 -39.46628 -37.69131 -36.62923 -34.54147 -33.98165 -32.02681 -31.02440 -29.76147 -28.90809 -27.29800 -25.52096 -24.39658 -23.75419 -22.39354 -21.21806 -20.97962 -19.37368 -19.02651 -18.76576 -18.24008 -17.89098 -17.41495 -17.35624 -17.10545 -16.75635 -16.35720 -16.05003 -15.89804 -15.84916 -15.43319 -15.19346 -15.07781 -14.79223 -14.62685 -14.44729 -14.27160 -13.99201 -13.93064 -13.53408 -13.31845 -12.99496 -12.85021 -12.71943 -12.58359 -12.45172 -12.41713 -12.22195 -12.10127 -11.21155 -11.11765 -11.06551 -10.67951 -10.53224 -10.18352 -9.72782 -9.12452 -8.14711 -6.31176 -0.29096 -0.14787 1.27238 1.42381 1.47720 1.49073 1.58492 1.75278 2.29725 2.34797 2.53574 2.74315 3.03390 3.16390 3.16878 3.29373 3.54212 3.69257 3.82217 3.84911 3.87488 4.20495 4.24565 4.42245 4.50504 4.59427 4.70521 4.77165 4.81707 4.85264 4.87347 4.97247 4.99834 5.14738 5.23874 5.48385 5.64302 5.69887 5.73634 5.75243 5.93730 6.14593 6.75016 6.77603 6.96859 7.36218 7.56411 8.91145 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.026556 B = 0.002166 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.119157 B =12926.087745 C =13525.032987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.271 3.729 3 H 0.002 0.998 4 C -0.543 4.543 5 H 0.077 0.923 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.968 3.032 9 H -0.279 1.279 10 H -0.289 1.289 11 H -0.259 1.259 12 N -0.697 5.697 13 C 0.513 3.487 14 O -0.591 6.591 15 C -0.106 4.106 16 H 0.156 0.844 17 C -0.134 4.134 18 C 0.524 3.476 19 O -0.530 6.530 20 N -0.555 5.555 21 C 0.184 3.816 22 C -0.143 4.143 23 C -0.082 4.082 24 C 0.027 3.973 25 F -0.137 7.137 26 C 0.088 3.912 27 F -0.133 7.133 28 C -0.164 4.164 29 C 0.107 3.893 30 H 0.014 0.986 31 H 0.042 0.958 32 H 0.062 0.938 33 H 0.264 0.736 34 H 0.409 0.591 35 H 0.149 0.851 36 H 0.112 0.888 37 H 0.166 0.834 38 H 0.176 0.824 39 H 0.164 0.836 40 H 0.117 0.883 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.400 -6.456 -20.019 21.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.167 3.833 3 H 0.020 0.980 4 C -0.581 4.581 5 H 0.095 0.905 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.793 3.207 9 H -0.205 1.205 10 H -0.215 1.215 11 H -0.183 1.183 12 N -0.346 5.346 13 C 0.299 3.701 14 O -0.472 6.472 15 C -0.127 4.127 16 H 0.173 0.827 17 C -0.174 4.174 18 C 0.315 3.685 19 O -0.407 6.407 20 N -0.276 5.276 21 C 0.089 3.911 22 C -0.163 4.163 23 C -0.101 4.101 24 C 0.006 3.994 25 F -0.116 7.116 26 C 0.068 3.932 27 F -0.112 7.112 28 C -0.185 4.185 29 C -0.014 4.014 30 H 0.034 0.966 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.244 0.756 35 H 0.167 0.833 36 H 0.130 0.870 37 H 0.183 0.817 38 H 0.193 0.807 39 H 0.181 0.819 40 H 0.136 0.864 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.901 -5.914 -20.310 21.714 hybrid contribution 0.271 0.263 0.785 0.871 sum 5.172 -5.651 -19.525 20.974 Atomic orbital electron populations 1.21910 0.98390 0.99567 0.99589 1.18329 0.91001 0.92046 0.81899 0.98032 1.21569 1.32301 1.13533 0.90701 0.90525 1.25757 0.94978 0.95588 1.02290 1.70049 1.37098 1.23991 1.24477 0.85408 0.77638 0.79344 0.78326 1.20543 1.21468 1.18256 1.46204 1.64562 1.14405 1.09403 1.20561 0.77662 0.86826 0.85066 1.90683 1.52874 1.18099 1.85567 1.22184 1.02958 0.96251 0.91347 0.82687 1.22382 1.01866 1.03066 0.90052 1.21324 0.75359 0.79656 0.92123 1.90623 1.48326 1.42565 1.59172 1.45947 1.55172 1.21961 1.04566 1.17612 0.96889 0.93217 0.83402 1.21612 1.02230 1.01899 0.90550 1.21180 0.96826 0.93948 0.98135 1.17812 1.07461 0.95957 0.78130 1.91500 1.92733 1.92403 1.34982 1.17421 1.01008 0.81776 0.93023 1.91526 1.83852 1.41545 1.94241 1.20705 1.05276 0.97090 0.95437 1.22303 1.04347 0.93679 0.81118 0.96649 0.93932 0.91894 0.92711 0.75555 0.83340 0.87014 0.81661 0.80691 0.81865 0.86444 0.89312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.28 9.26 71.98 0.67 -5.62 16 2 C 0.27 12.58 2.56 44.25 0.11 12.70 16 3 H 0.00 0.10 7.58 -2.38 -0.02 0.08 16 4 C -0.54 -26.30 8.73 25.60 0.22 -26.08 16 5 H 0.08 3.40 7.74 -2.91 -0.02 3.38 16 6 C 0.01 0.71 5.30 84.66 0.45 1.15 16 7 N -0.92 -50.30 11.32 21.45 0.24 -50.05 16 8 Si 0.97 39.78 29.54 68.60 2.03 41.81 16 9 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 10 H -0.29 -11.96 7.11 99.48 0.71 -11.26 16 11 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 12 N -0.70 -23.48 5.07 -446.09 -2.26 -25.75 16 13 C 0.51 15.69 7.02 87.66 0.62 16.31 16 14 O -0.59 -23.80 15.17 -3.02 -0.05 -23.84 16 15 C -0.11 -1.90 3.55 -10.48 -0.04 -1.94 16 16 H 0.16 1.78 8.14 -2.39 -0.02 1.76 16 17 C -0.13 -2.18 6.41 30.59 0.20 -1.99 16 18 C 0.52 10.67 7.92 87.90 0.70 11.37 16 19 O -0.53 -13.30 14.82 -3.07 -0.05 -13.35 16 20 N -0.55 -10.49 3.14 -627.65 -1.97 -12.46 16 21 C 0.18 3.54 6.60 38.12 0.25 3.79 16 22 C -0.14 -2.63 9.28 22.40 0.21 -2.42 16 23 C -0.08 -1.30 10.02 22.29 0.22 -1.08 16 24 C 0.03 0.53 7.30 22.42 0.16 0.69 16 25 F -0.14 -2.90 17.18 44.97 0.77 -2.13 16 26 C 0.09 1.78 7.30 22.39 0.16 1.95 16 27 F -0.13 -2.98 17.18 44.97 0.77 -2.21 16 28 C -0.16 -2.97 9.38 22.43 0.21 -2.76 16 29 C 0.11 1.93 5.63 86.83 0.49 2.42 16 30 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.06 3.29 6.07 -2.39 -0.01 3.27 16 33 H 0.26 13.80 8.31 -92.71 -0.77 13.03 16 34 H 0.41 10.84 8.54 -92.71 -0.79 10.05 16 35 H 0.15 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.11 2.07 7.89 -2.39 -0.02 2.05 16 37 H 0.17 3.33 5.26 -2.91 -0.02 3.32 16 38 H 0.18 1.82 8.06 -2.91 -0.02 1.80 16 39 H 0.16 2.51 7.01 -2.91 -0.02 2.49 16 40 H 0.12 1.60 7.70 -2.39 -0.02 1.58 16 41 H 0.09 2.00 6.96 -2.39 -0.02 1.98 16 Total: -1.00 -66.33 354.67 4.44 -61.89 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 0.31 Total: 17.60 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: 4.63 Total: 8.49 kcal Atomic # 7 Polarization: -84.27 SS G_CDS: -3.99 Total: -88.26 kcal Atomic # 8 Polarization: -37.10 SS G_CDS: -0.09 Total: -37.19 kcal Atomic # 9 Polarization: -5.88 SS G_CDS: 1.54 Total: -4.34 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.81 kcal Total: -66.33 4.44 -61.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599220367.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.940 kcal (2) G-P(sol) polarization free energy of solvation -66.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds