Wall clock time and date at job start Tue Mar 31 2020 20:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.58429 * 2 1 4 4 S 1.81734 * 109.58547 * 120.28413 * 2 1 3 5 5 C 1.81747 * 102.30812 * 174.33259 * 4 2 1 6 6 C 1.53235 * 108.79446 * 305.45742 * 5 4 2 7 7 N 1.46380 * 109.48964 * 57.65642 * 6 5 4 8 8 C 1.34776 * 119.64412 * 114.91201 * 7 6 5 9 9 O 1.21376 * 119.99492 * 185.35988 * 8 7 6 10 10 C 1.49304 * 120.00517 * 5.35636 * 8 7 6 11 11 O 1.21411 * 119.99907 * 353.79499 * 10 8 7 12 12 N 1.34773 * 120.00078 * 173.79386 * 10 8 7 13 13 C 1.40300 * 120.00032 * 180.02562 * 12 10 8 14 14 C 1.40724 * 126.09605 * 359.97438 * 13 12 10 15 15 N 1.30878 * 108.37390 * 180.02562 * 14 13 12 16 16 N 1.40062 * 108.43390 * 0.02562 * 15 14 13 17 17 C 1.37300 * 126.05361 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00081 * 179.97438 * 17 16 15 19 19 C 1.39009 * 119.99993 * 359.97438 * 17 16 15 20 20 N 1.31287 * 119.99978 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99750 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47449 * 60.00025 * 21 19 17 23 23 H 1.48511 * 109.46762 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47355 * 299.99603 * 21 19 17 25 25 C 1.35782 * 126.10225 * 180.02562 * 13 12 10 26 26 C 1.46372 * 120.70566 * 295.18400 * 7 6 5 27 27 H 1.08997 * 109.46840 * 184.81999 * 26 7 6 28 28 C 1.53003 * 109.46937 * 304.80760 * 26 7 6 29 29 H 1.09000 * 109.46386 * 299.71934 * 1 2 3 30 30 H 1.08994 * 109.47229 * 59.71846 * 1 2 3 31 31 H 1.08996 * 109.46899 * 179.72198 * 1 2 3 32 32 H 1.09001 * 109.58104 * 185.66463 * 5 4 2 33 33 H 1.08999 * 109.69206 * 65.31905 * 5 4 2 34 34 H 1.08998 * 109.47380 * 297.64929 * 6 5 4 35 35 H 1.08999 * 109.46795 * 177.66076 * 6 5 4 36 36 H 0.97003 * 120.00164 * 0.02562 * 12 10 8 37 37 H 1.07994 * 125.81375 * 359.97438 * 14 13 12 38 38 H 0.96996 * 119.99677 * 180.02562 * 20 19 17 39 39 H 1.08006 * 126.25010 * 359.97438 * 25 13 12 40 40 H 1.08999 * 109.46604 * 60.00212 * 28 26 7 41 41 H 1.08996 * 109.46937 * 179.97438 * 28 26 7 42 42 H 1.08998 * 109.46825 * 300.00050 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 16 2.1392 -0.8634 1.4785 5 6 3.9339 -0.9002 1.1938 6 6 4.2040 -1.5398 -0.1722 7 7 3.5060 -0.7827 -1.2126 8 6 4.2176 -0.1265 -2.1504 9 8 3.6509 0.5817 -2.9569 10 6 5.7030 -0.2705 -2.1971 11 8 6.2809 -0.8864 -1.3249 12 7 6.4022 0.2830 -3.2075 13 6 7.7979 0.1472 -3.2517 14 6 8.5946 -0.5355 -2.3139 15 7 9.8447 -0.4447 -2.6906 16 7 9.8967 0.2965 -3.8780 17 6 11.0305 0.6091 -4.5864 18 1 10.9571 1.1888 -5.4947 19 6 12.2729 0.1794 -4.1346 20 7 12.3622 -0.5249 -3.0303 21 14 13.8154 0.6041 -5.0989 22 1 13.9554 2.0800 -5.1839 23 1 15.0017 0.0336 -4.4113 24 1 13.7155 0.0367 -6.4675 25 6 8.6211 0.6518 -4.2065 26 6 2.0437 -0.7259 -1.2418 27 1 1.7187 -0.1897 -2.1334 28 6 1.4785 -2.1474 -1.2674 29 1 -0.3632 0.5095 0.8925 30 1 -0.3633 0.5182 -0.8874 31 1 -0.3633 -1.0276 -0.0050 32 1 4.4156 -1.4889 1.9745 33 1 4.3286 0.1157 1.2061 34 1 3.8448 -2.5689 -0.1690 35 1 5.2754 -1.5298 -0.3726 36 1 5.9406 0.7754 -3.9043 37 1 8.2357 -1.0466 -1.4328 38 1 13.2292 -0.8244 -2.7149 39 1 8.3208 1.2292 -5.0684 40 1 1.8036 -2.6837 -0.3758 41 1 0.3896 -2.1051 -1.2886 42 1 1.8398 -2.6661 -2.1553 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746410603.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:35 Heat of formation + Delta-G solvation = 45.672633 kcal Electronic energy + Delta-G solvation = -27064.245856 eV Core-core repulsion = 23173.955023 eV Total energy + Delta-G solvation = -3890.290833 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.04766 -39.76383 -38.40038 -37.34458 -34.93349 -33.96514 -33.25961 -30.74141 -30.42000 -29.46714 -28.15819 -26.03871 -25.22988 -24.12901 -23.01596 -21.37506 -20.75444 -19.80790 -19.64292 -17.83719 -17.58444 -17.05982 -16.22550 -16.04851 -15.59699 -15.44487 -15.18129 -14.95620 -14.88610 -14.45754 -14.25683 -13.99481 -13.58974 -13.20528 -13.13986 -13.09186 -12.90980 -12.56715 -12.27324 -11.95140 -11.89045 -11.79105 -11.64087 -11.39674 -11.33182 -11.23095 -10.96747 -10.78398 -10.62348 -10.45537 -9.96045 -9.31770 -9.12739 -8.98914 -8.68927 -8.22381 -7.77400 -6.90141 -6.67653 -4.35811 1.45010 1.50055 2.31775 2.35491 2.88358 2.99348 3.03320 3.16921 3.54636 3.59286 3.78122 4.25334 4.28274 4.38629 4.52934 4.75467 4.80906 4.85340 4.91149 4.96965 5.02004 5.11931 5.22494 5.32947 5.50921 5.52720 5.60548 5.70150 5.80044 5.93440 6.05904 6.10463 6.22529 6.24954 6.62879 6.79697 6.97878 6.98138 7.09357 7.57536 7.73289 7.94887 8.08197 8.35426 8.58942 9.21890 9.50247 10.27886 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.032549 B = 0.002345 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.026179 B =11936.606850 C =12465.651626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.062 4.062 3 H 0.089 0.911 4 S -0.269 6.269 5 C -0.089 4.089 6 C 0.028 3.972 7 N -0.581 5.581 8 C 0.516 3.484 9 O -0.526 6.526 10 C 0.486 3.514 11 O -0.509 6.509 12 N -0.572 5.572 13 C -0.076 4.076 14 C -0.023 4.023 15 N -0.260 5.260 16 N -0.135 5.135 17 C -0.321 4.321 18 H 0.118 0.882 19 C 0.047 3.953 20 N -0.766 5.766 21 Si 0.937 3.063 22 H -0.266 1.266 23 H -0.276 1.276 24 H -0.266 1.266 25 C -0.076 4.076 26 C 0.133 3.867 27 H 0.110 0.890 28 C -0.165 4.165 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.116 0.884 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.189 0.811 36 H 0.411 0.589 37 H 0.179 0.821 38 H 0.277 0.723 39 H 0.150 0.850 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.150 -0.760 3.832 18.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.191 4.191 3 H 0.108 0.892 4 S -0.042 6.042 5 C -0.238 4.238 6 C -0.094 4.094 7 N -0.315 5.315 8 C 0.299 3.701 9 O -0.402 6.402 10 C 0.269 3.731 11 O -0.389 6.389 12 N -0.212 5.212 13 C -0.182 4.182 14 C -0.199 4.199 15 N -0.091 5.091 16 N 0.098 4.902 17 C -0.454 4.454 18 H 0.136 0.864 19 C -0.171 4.171 20 N -0.392 5.392 21 Si 0.760 3.240 22 H -0.190 1.190 23 H -0.200 1.200 24 H -0.190 1.190 25 C -0.228 4.228 26 C 0.028 3.972 27 H 0.128 0.872 28 C -0.223 4.223 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.135 0.865 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.204 0.796 36 H 0.246 0.754 37 H 0.195 0.805 38 H 0.088 0.912 39 H 0.167 0.833 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.233 -1.632 5.308 18.106 hybrid contribution 0.063 1.232 -1.800 2.183 sum -17.171 -0.400 3.507 17.530 Atomic orbital electron populations 1.21671 0.91077 1.03432 1.02950 1.23474 0.99929 1.01381 0.94347 0.89213 1.86761 1.08153 1.77688 1.31623 1.23873 0.92988 1.05400 1.01506 1.23801 1.06890 0.94312 0.84360 1.47857 1.05863 1.49542 1.28197 1.20217 0.88477 0.80038 0.81348 1.90727 1.71899 1.37646 1.39959 1.19622 0.87330 0.82541 0.83627 1.89994 1.68938 1.42607 1.37409 1.42149 1.05787 1.49269 1.24022 1.17249 0.80826 1.16739 1.03357 1.24150 0.90323 1.04178 1.01224 1.78285 1.16530 1.16062 0.98205 1.44578 1.03470 1.28115 1.14002 1.19909 0.82228 1.35747 1.07488 0.86396 1.25678 0.99978 0.95297 0.96181 1.70190 1.26185 1.25466 1.17342 0.85857 0.79218 0.79430 0.79482 1.19050 1.20037 1.19040 1.21309 0.85407 1.12717 1.03344 1.21211 0.79432 0.98074 0.98454 0.87197 1.22248 1.01376 0.95193 1.03508 0.91436 0.90863 0.90986 0.86538 0.89667 0.90461 0.79634 0.75367 0.80465 0.91194 0.83294 0.90345 0.90832 0.92061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.98 8.81 37.16 0.33 -0.65 16 2 C -0.06 -0.60 3.06 -26.87 -0.08 -0.69 16 3 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 4 S -0.27 -2.87 20.28 -107.50 -2.18 -5.05 16 5 C -0.09 -0.96 6.67 37.28 0.25 -0.71 16 6 C 0.03 0.34 5.66 -3.99 -0.02 0.31 16 7 N -0.58 -7.30 2.57 -166.87 -0.43 -7.73 16 8 C 0.52 7.69 7.71 -11.65 -0.09 7.60 16 9 O -0.53 -8.47 15.81 5.47 0.09 -8.39 16 10 C 0.49 8.20 7.77 -11.66 -0.09 8.11 16 11 O -0.51 -9.11 10.09 5.44 0.05 -9.06 16 12 N -0.57 -10.14 5.45 -10.45 -0.06 -10.20 16 13 C -0.08 -1.66 6.90 -83.92 -0.58 -2.24 16 14 C -0.02 -0.56 10.85 -17.02 -0.18 -0.75 16 15 N -0.26 -7.17 10.39 30.81 0.32 -6.85 16 16 N -0.14 -3.56 3.73 -11.40 -0.04 -3.60 16 17 C -0.32 -8.15 10.25 -14.82 -0.15 -8.30 16 18 H 0.12 2.66 7.83 -52.48 -0.41 2.24 16 19 C 0.05 1.16 5.50 -17.50 -0.10 1.06 16 20 N -0.77 -20.54 11.81 55.50 0.66 -19.88 16 21 Si 0.94 18.19 29.55 -169.99 -5.02 13.17 16 22 H -0.27 -5.03 7.11 56.52 0.40 -4.62 16 23 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 24 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 25 C -0.08 -1.72 11.49 -16.38 -0.19 -1.90 16 26 C 0.13 1.41 2.67 -68.14 -0.18 1.23 16 27 H 0.11 1.24 6.91 -51.93 -0.36 0.88 16 28 C -0.17 -1.47 8.36 37.16 0.31 -1.16 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.49 6.34 -51.93 -0.33 0.16 16 32 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.08 0.84 6.94 -51.93 -0.36 0.48 16 35 H 0.19 2.60 3.48 -58.01 -0.20 2.40 16 36 H 0.41 6.31 8.31 -40.82 -0.34 5.97 16 37 H 0.18 4.11 5.92 -52.49 -0.31 3.80 16 38 H 0.28 6.81 8.31 -40.82 -0.34 6.47 16 39 H 0.15 2.81 8.06 -52.48 -0.42 2.39 16 40 H 0.08 0.73 5.85 -51.93 -0.30 0.43 16 41 H 0.07 0.52 6.34 -51.93 -0.33 0.20 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 349.84 15.07 5.27 5.27 Total: -1.00 -29.90 349.84 -7.16 -37.07 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -5.04 Total: 13.34 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -0.78 Total: 1.91 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: 0.45 Total: -48.26 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: 0.14 Total: -17.44 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.02 Total: 13.17 kcal Atomic # 16 Polarization: -2.87 SS G_CDS: -2.18 Total: -5.05 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.90 -7.16 -37.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746410603.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.739 kcal (2) G-P(sol) polarization free energy of solvation -29.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds