Wall clock time and date at job start Tue Mar 31 2020 20:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.58429 * 2 1 4 4 S 1.81734 * 109.58547 * 120.28413 * 2 1 3 5 5 C 1.81747 * 102.30812 * 174.33259 * 4 2 1 6 6 C 1.53235 * 108.79446 * 305.45742 * 5 4 2 7 7 N 1.46380 * 109.48964 * 57.65642 * 6 5 4 8 8 C 1.34776 * 119.64412 * 114.91201 * 7 6 5 9 9 O 1.21376 * 119.99492 * 185.35988 * 8 7 6 10 10 C 1.49304 * 120.00517 * 5.35636 * 8 7 6 11 11 O 1.21411 * 119.99907 * 353.79499 * 10 8 7 12 12 N 1.34773 * 120.00078 * 173.79386 * 10 8 7 13 13 C 1.40300 * 120.00032 * 180.02562 * 12 10 8 14 14 C 1.40724 * 126.09605 * 359.97438 * 13 12 10 15 15 N 1.30878 * 108.37390 * 180.02562 * 14 13 12 16 16 N 1.40062 * 108.43390 * 0.02562 * 15 14 13 17 17 C 1.37300 * 126.05361 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00081 * 179.97438 * 17 16 15 19 19 C 1.39009 * 119.99993 * 359.97438 * 17 16 15 20 20 N 1.31287 * 119.99978 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99750 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47449 * 60.00025 * 21 19 17 23 23 H 1.48511 * 109.46762 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47355 * 299.99603 * 21 19 17 25 25 C 1.35782 * 126.10225 * 180.02562 * 13 12 10 26 26 C 1.46372 * 120.70566 * 295.18400 * 7 6 5 27 27 H 1.08997 * 109.46840 * 184.81999 * 26 7 6 28 28 C 1.53003 * 109.46937 * 304.80760 * 26 7 6 29 29 H 1.09000 * 109.46386 * 299.71934 * 1 2 3 30 30 H 1.08994 * 109.47229 * 59.71846 * 1 2 3 31 31 H 1.08996 * 109.46899 * 179.72198 * 1 2 3 32 32 H 1.09001 * 109.58104 * 185.66463 * 5 4 2 33 33 H 1.08999 * 109.69206 * 65.31905 * 5 4 2 34 34 H 1.08998 * 109.47380 * 297.64929 * 6 5 4 35 35 H 1.08999 * 109.46795 * 177.66076 * 6 5 4 36 36 H 0.97003 * 120.00164 * 0.02562 * 12 10 8 37 37 H 1.07994 * 125.81375 * 359.97438 * 14 13 12 38 38 H 0.96996 * 119.99677 * 180.02562 * 20 19 17 39 39 H 1.08006 * 126.25010 * 359.97438 * 25 13 12 40 40 H 1.08999 * 109.46604 * 60.00212 * 28 26 7 41 41 H 1.08996 * 109.46937 * 179.97438 * 28 26 7 42 42 H 1.08998 * 109.46825 * 300.00050 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 16 2.1392 -0.8634 1.4785 5 6 3.9339 -0.9002 1.1938 6 6 4.2040 -1.5398 -0.1722 7 7 3.5060 -0.7827 -1.2126 8 6 4.2176 -0.1265 -2.1504 9 8 3.6509 0.5817 -2.9569 10 6 5.7030 -0.2705 -2.1971 11 8 6.2809 -0.8864 -1.3249 12 7 6.4022 0.2830 -3.2075 13 6 7.7979 0.1472 -3.2517 14 6 8.5946 -0.5355 -2.3139 15 7 9.8447 -0.4447 -2.6906 16 7 9.8967 0.2965 -3.8780 17 6 11.0305 0.6091 -4.5864 18 1 10.9571 1.1888 -5.4947 19 6 12.2729 0.1794 -4.1346 20 7 12.3622 -0.5249 -3.0303 21 14 13.8154 0.6041 -5.0989 22 1 13.9554 2.0800 -5.1839 23 1 15.0017 0.0336 -4.4113 24 1 13.7155 0.0367 -6.4675 25 6 8.6211 0.6518 -4.2065 26 6 2.0437 -0.7259 -1.2418 27 1 1.7187 -0.1897 -2.1334 28 6 1.4785 -2.1474 -1.2674 29 1 -0.3632 0.5095 0.8925 30 1 -0.3633 0.5182 -0.8874 31 1 -0.3633 -1.0276 -0.0050 32 1 4.4156 -1.4889 1.9745 33 1 4.3286 0.1157 1.2061 34 1 3.8448 -2.5689 -0.1690 35 1 5.2754 -1.5298 -0.3726 36 1 5.9406 0.7754 -3.9043 37 1 8.2357 -1.0466 -1.4328 38 1 13.2292 -0.8244 -2.7149 39 1 8.3208 1.2292 -5.0684 40 1 1.8036 -2.6837 -0.3758 41 1 0.3896 -2.1051 -1.2886 42 1 1.8398 -2.6661 -2.1553 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746410603.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:34 Heat of formation + Delta-G solvation = 26.627460 kcal Electronic energy + Delta-G solvation = -27065.071717 eV Core-core repulsion = 23173.955023 eV Total energy + Delta-G solvation = -3891.116694 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.36711 -41.42816 -39.78504 -38.45011 -36.30911 -35.24207 -34.81666 -32.30433 -31.69707 -30.32627 -29.84136 -27.37003 -26.50043 -25.44540 -23.99777 -23.02691 -22.03588 -21.35250 -20.91965 -19.48685 -18.82804 -18.29321 -17.46355 -17.36494 -17.05045 -16.74099 -16.55043 -16.11521 -15.83429 -15.63818 -15.58159 -15.33952 -15.08038 -14.85418 -14.38991 -14.09436 -13.86347 -13.51063 -13.42367 -13.24479 -13.12163 -12.89819 -12.83813 -12.70907 -12.63399 -12.45077 -12.13762 -12.03847 -11.97816 -11.77764 -11.07483 -10.90431 -10.86337 -10.15896 -10.14058 -9.94833 -8.67852 -8.62826 -8.49411 -6.27217 0.14197 0.65782 1.14341 1.29480 1.41449 1.46108 1.56807 1.69983 1.96440 2.09699 2.36285 2.48694 2.79886 3.07233 3.27531 3.49001 3.71566 3.91040 4.01462 4.05404 4.26597 4.29443 4.37995 4.40673 4.50742 4.69967 4.72297 4.78822 4.83980 4.87347 4.92235 4.94300 4.97308 5.11334 5.23039 5.26025 5.34369 5.54859 5.85193 5.90915 6.17223 6.33722 6.62353 6.69678 7.01367 7.39759 7.62257 8.49354 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.032549 B = 0.002345 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.026179 B =11936.606850 C =12465.651626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.058 4.058 3 H 0.077 0.923 4 S -0.269 6.269 5 C -0.088 4.088 6 C 0.031 3.969 7 N -0.573 5.573 8 C 0.521 3.479 9 O -0.538 6.538 10 C 0.490 3.510 11 O -0.518 6.518 12 N -0.574 5.574 13 C -0.060 4.060 14 C -0.042 4.042 15 N -0.308 5.308 16 N -0.163 5.163 17 C -0.353 4.353 18 H 0.141 0.859 19 C -0.004 4.004 20 N -0.819 5.819 21 Si 1.018 2.982 22 H -0.254 1.254 23 H -0.277 1.277 24 H -0.254 1.254 25 C -0.074 4.074 26 C 0.130 3.870 27 H 0.107 0.893 28 C -0.159 4.159 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.130 0.870 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.170 0.830 36 H 0.423 0.577 37 H 0.181 0.819 38 H 0.278 0.722 39 H 0.187 0.813 40 H 0.075 0.925 41 H 0.096 0.904 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.122 -0.374 3.070 20.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.188 4.188 3 H 0.095 0.905 4 S -0.042 6.042 5 C -0.236 4.236 6 C -0.091 4.091 7 N -0.305 5.305 8 C 0.304 3.696 9 O -0.415 6.415 10 C 0.273 3.727 11 O -0.399 6.399 12 N -0.217 5.217 13 C -0.166 4.166 14 C -0.218 4.218 15 N -0.139 5.139 16 N 0.070 4.930 17 C -0.485 4.485 18 H 0.158 0.842 19 C -0.216 4.216 20 N -0.447 5.447 21 Si 0.837 3.163 22 H -0.178 1.178 23 H -0.202 1.202 24 H -0.178 1.178 25 C -0.225 4.225 26 C 0.026 3.974 27 H 0.125 0.875 28 C -0.217 4.217 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.148 0.852 33 H 0.092 0.908 34 H 0.110 0.890 35 H 0.185 0.815 36 H 0.261 0.739 37 H 0.198 0.802 38 H 0.088 0.912 39 H 0.204 0.796 40 H 0.094 0.906 41 H 0.115 0.885 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.263 -1.250 4.560 19.835 hybrid contribution 0.409 1.084 -1.456 1.861 sum -18.854 -0.165 3.103 19.108 Atomic orbital electron populations 1.21691 0.88876 1.04329 1.03812 1.23521 1.01639 1.00296 0.93357 0.90481 1.86790 1.07413 1.77670 1.32335 1.23816 0.93741 1.04865 1.01218 1.23663 1.05656 0.95129 0.84659 1.47963 1.06916 1.48359 1.27310 1.19752 0.87285 0.80559 0.82020 1.90728 1.71644 1.38432 1.40698 1.20143 0.88439 0.81297 0.82795 1.90058 1.69855 1.42369 1.37585 1.42084 1.04146 1.50321 1.25141 1.17257 0.82590 1.14809 1.01951 1.24315 0.90326 1.05083 1.02059 1.78176 1.18237 1.17697 0.99781 1.44829 1.04815 1.29194 1.14181 1.20602 0.82684 1.36671 1.08498 0.84187 1.26848 1.03355 0.94493 0.96896 1.70358 1.26996 1.27629 1.19696 0.84668 0.74162 0.79549 0.77971 1.17846 1.20213 1.17790 1.22004 0.84450 1.11901 1.04151 1.21439 0.77740 0.99457 0.98756 0.87510 1.22228 1.02739 0.93586 1.03160 0.91139 0.89457 0.90035 0.85179 0.90805 0.89026 0.81500 0.73870 0.80192 0.91207 0.79645 0.90627 0.88532 0.92402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 8.81 71.98 0.63 -0.89 16 2 C -0.06 -1.02 3.06 30.51 0.09 -0.93 16 3 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 4 S -0.27 -5.23 20.28 -56.49 -1.15 -6.38 16 5 C -0.09 -1.80 6.67 72.06 0.48 -1.32 16 6 C 0.03 0.70 5.66 86.48 0.49 1.19 16 7 N -0.57 -13.63 2.57 -800.21 -2.06 -15.69 16 8 C 0.52 15.00 7.71 87.22 0.67 15.67 16 9 O -0.54 -16.56 15.81 -3.33 -0.05 -16.62 16 10 C 0.49 16.32 7.77 87.22 0.68 17.00 16 11 O -0.52 -18.67 10.09 -3.44 -0.03 -18.71 16 12 N -0.57 -19.96 5.45 -305.33 -1.66 -21.62 16 13 C -0.06 -2.62 6.90 37.82 0.26 -2.35 16 14 C -0.04 -2.12 10.85 85.44 0.93 -1.20 16 15 N -0.31 -17.59 10.39 -56.44 -0.59 -18.18 16 16 N -0.16 -8.69 3.73 -189.97 -0.71 -9.40 16 17 C -0.35 -18.11 10.25 84.02 0.86 -17.25 16 18 H 0.14 6.21 7.83 -2.91 -0.02 6.19 16 19 C 0.00 -0.18 5.50 84.96 0.47 0.29 16 20 N -0.82 -45.61 11.81 21.67 0.26 -45.36 16 21 Si 1.02 37.35 29.55 68.60 2.03 39.38 16 22 H -0.25 -8.77 7.11 99.48 0.71 -8.07 16 23 H -0.28 -10.09 7.11 99.48 0.71 -9.38 16 24 H -0.25 -8.74 7.11 99.48 0.71 -8.03 16 25 C -0.07 -3.31 11.49 83.41 0.96 -2.35 16 26 C 0.13 2.48 2.67 44.93 0.12 2.60 16 27 H 0.11 2.18 6.91 -2.39 -0.02 2.16 16 28 C -0.16 -2.41 8.36 71.98 0.60 -1.80 16 29 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.08 0.83 6.34 -2.39 -0.02 0.82 16 32 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.09 1.84 6.94 -2.39 -0.02 1.82 16 35 H 0.17 4.63 3.48 -98.66 -0.34 4.28 16 36 H 0.42 12.46 8.31 -92.71 -0.77 11.69 16 37 H 0.18 8.68 5.92 -2.91 -0.02 8.67 16 38 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 39 H 0.19 6.64 8.06 -2.91 -0.02 6.62 16 40 H 0.07 1.21 5.85 -2.39 -0.01 1.20 16 41 H 0.10 1.04 6.34 -2.39 -0.02 1.02 16 42 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -66.67 349.84 3.26 -63.42 By element: Atomic # 1 Polarization: 40.53 SS G_CDS: -0.02 Total: 40.51 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: 7.24 Total: 8.64 kcal Atomic # 7 Polarization: -105.48 SS G_CDS: -4.76 Total: -110.24 kcal Atomic # 8 Polarization: -35.24 SS G_CDS: -0.09 Total: -35.32 kcal Atomic # 14 Polarization: 37.35 SS G_CDS: 2.03 Total: 39.38 kcal Atomic # 16 Polarization: -5.23 SS G_CDS: -1.15 Total: -6.38 kcal Total: -66.67 3.26 -63.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746410603.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.045 kcal (2) G-P(sol) polarization free energy of solvation -66.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds