Wall clock time and date at job start Tue Mar 31 2020 20:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46256 * 2 1 4 4 C 1.53238 * 109.47121 * 240.01440 * 2 1 3 5 5 H 1.09001 * 109.58496 * 177.85519 * 4 2 1 6 6 C 1.53006 * 109.58394 * 57.44276 * 4 2 1 7 7 S 1.81740 * 108.79565 * 297.64910 * 4 2 1 8 8 C 1.81737 * 102.30528 * 305.46001 * 7 4 2 9 9 C 1.52722 * 108.84303 * 54.42605 * 8 7 4 10 10 N 1.46371 * 109.46912 * 119.99267 * 2 1 3 11 11 C 1.34776 * 119.65154 * 234.91878 * 10 2 1 12 12 O 1.21367 * 119.99704 * 10.17923 * 11 10 2 13 13 C 1.49306 * 120.00638 * 190.17548 * 11 10 2 14 14 O 1.21409 * 119.99319 * 7.02151 * 13 11 10 15 15 N 1.34774 * 120.00134 * 187.02646 * 13 11 10 16 16 C 1.40300 * 119.99591 * 180.02562 * 15 13 11 17 17 C 1.40720 * 126.10324 * 359.97438 * 16 15 13 18 18 N 1.30874 * 108.37683 * 180.02562 * 17 16 15 19 19 N 1.40061 * 108.43653 * 0.02562 * 18 17 16 20 20 C 1.37298 * 126.05568 * 180.02562 * 19 18 17 21 21 H 1.07997 * 119.99876 * 179.97438 * 20 19 18 22 22 C 1.39003 * 119.99898 * 359.97075 * 20 19 18 23 23 N 1.31287 * 120.00182 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99757 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47466 * 89.99911 * 24 22 20 26 26 H 1.48506 * 109.46832 * 209.99940 * 24 22 20 27 27 H 1.48499 * 109.47439 * 329.99437 * 24 22 20 28 28 C 1.35788 * 126.09294 * 179.97438 * 16 15 13 29 29 H 1.09000 * 109.47645 * 300.00460 * 1 2 3 30 30 H 1.09003 * 109.47054 * 60.00749 * 1 2 3 31 31 H 1.09000 * 109.46956 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47227 * 60.00189 * 6 4 2 33 33 H 1.08995 * 109.46900 * 180.02562 * 6 4 2 34 34 H 1.08998 * 109.47013 * 300.00152 * 6 4 2 35 35 H 1.09008 * 109.58300 * 174.33413 * 8 7 4 36 36 H 1.08999 * 109.58334 * 294.74094 * 8 7 4 37 37 H 1.08997 * 109.32682 * 182.42622 * 9 8 7 38 38 H 1.08999 * 109.32472 * 62.61202 * 9 8 7 39 39 H 0.96998 * 120.00419 * 359.97438 * 15 13 11 40 40 H 1.08008 * 125.80974 * 0.02562 * 17 16 15 41 41 H 0.96994 * 120.00050 * 180.02562 * 23 22 20 42 42 H 1.07998 * 126.25620 * 359.97438 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0408 -0.7221 -1.2514 5 1 3.1301 -0.6900 -1.2727 6 6 1.4803 -0.0406 -2.5014 7 16 1.4832 -2.4510 -1.1984 8 6 2.1020 -3.0082 0.4170 9 6 1.5897 -2.0568 1.4963 10 7 2.0178 -0.6899 1.1952 11 6 2.8748 -0.0618 2.0245 12 8 3.0949 1.1236 1.8854 13 6 3.5532 -0.8242 3.1143 14 8 3.4337 -2.0308 3.1761 15 7 4.2981 -0.1729 4.0295 16 6 4.9360 -0.8895 5.0532 17 6 4.8854 -2.2825 5.2460 18 7 5.6016 -2.5793 6.3004 19 7 6.1354 -1.3938 6.8214 20 6 6.9430 -1.2884 7.9267 21 1 7.3013 -0.3201 8.2433 22 6 7.2994 -2.4281 8.6383 23 7 6.8641 -3.6053 8.2531 24 14 8.3976 -2.2846 10.1425 25 1 7.5578 -2.0938 11.3522 26 1 9.2015 -3.5247 10.2885 27 1 9.3068 -1.1215 9.9825 28 6 5.7123 -0.3623 6.0347 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8057 0.9994 -2.5250 33 1 1.8444 -0.5558 -3.3902 34 1 0.3913 -0.0801 -2.4794 35 1 1.7427 -4.0176 0.6175 36 1 3.1920 -3.0002 0.4133 37 1 1.9914 -2.3587 2.4635 38 1 0.5009 -2.0982 1.5264 39 1 4.3937 0.7911 3.9799 40 1 4.3472 -2.9868 4.6289 41 1 7.1125 -4.4005 8.7499 42 1 5.9507 0.6824 6.1686 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746410606.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:37 Heat of formation + Delta-G solvation = 40.368299 kcal Electronic energy + Delta-G solvation = -27100.678719 eV Core-core repulsion = 23210.157872 eV Total energy + Delta-G solvation = -3890.520846 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.01191 -39.74897 -38.34575 -37.33935 -34.87636 -33.97172 -33.23912 -30.77038 -30.40537 -29.49725 -28.13119 -26.00678 -25.23147 -24.12897 -23.02448 -21.32117 -20.74805 -19.76001 -19.59762 -17.84814 -17.59086 -17.09883 -16.12586 -15.99898 -15.59971 -15.51741 -15.16268 -14.91818 -14.86395 -14.45279 -14.28898 -13.90639 -13.54119 -13.18077 -13.13082 -13.05243 -12.95200 -12.57127 -12.24751 -11.94094 -11.90435 -11.78735 -11.63180 -11.37445 -11.32912 -11.23595 -10.95882 -10.88372 -10.59494 -10.38905 -9.95404 -9.31107 -9.14861 -8.98122 -8.80577 -8.20877 -7.78963 -6.87431 -6.66779 -4.34596 1.46044 1.49858 2.31855 2.36058 2.87927 2.99989 3.05066 3.17556 3.53790 3.60760 3.78506 4.25552 4.28659 4.40198 4.52809 4.75691 4.81234 4.86636 4.92087 4.97507 5.00590 5.11204 5.21615 5.32030 5.50294 5.52007 5.60200 5.72354 5.78439 5.87546 6.02589 6.11455 6.22941 6.26604 6.65111 6.81262 6.89250 6.97063 7.09406 7.57759 7.74514 7.97032 8.09486 8.36617 8.60477 9.23378 9.51837 10.28873 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.030942 B = 0.002386 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.687370 B =11733.847732 C =12298.418134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.135 3.865 3 H 0.111 0.889 4 C -0.063 4.063 5 H 0.090 0.910 6 C -0.132 4.132 7 S -0.267 6.267 8 C -0.087 4.087 9 C 0.061 3.939 10 N -0.586 5.586 11 C 0.516 3.484 12 O -0.524 6.524 13 C 0.483 3.517 14 O -0.513 6.513 15 N -0.575 5.575 16 C -0.074 4.074 17 C -0.024 4.024 18 N -0.260 5.260 19 N -0.136 5.136 20 C -0.321 4.321 21 H 0.119 0.881 22 C 0.046 3.954 23 N -0.766 5.766 24 Si 0.936 3.064 25 H -0.270 1.270 26 H -0.275 1.275 27 H -0.263 1.263 28 C -0.077 4.077 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.117 0.883 36 H 0.089 0.911 37 H 0.163 0.837 38 H 0.077 0.923 39 H 0.410 0.590 40 H 0.178 0.822 41 H 0.277 0.723 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.211 5.661 -14.874 18.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.030 3.970 3 H 0.129 0.871 4 C -0.193 4.193 5 H 0.108 0.892 6 C -0.191 4.191 7 S -0.040 6.040 8 C -0.236 4.236 9 C -0.062 4.062 10 N -0.319 5.319 11 C 0.300 3.700 12 O -0.400 6.400 13 C 0.265 3.735 14 O -0.393 6.393 15 N -0.216 5.216 16 C -0.180 4.180 17 C -0.200 4.200 18 N -0.091 5.091 19 N 0.097 4.903 20 C -0.453 4.453 21 H 0.136 0.864 22 C -0.171 4.171 23 N -0.392 5.392 24 Si 0.760 3.240 25 H -0.195 1.195 26 H -0.200 1.200 27 H -0.187 1.187 28 C -0.228 4.228 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.135 0.865 36 H 0.108 0.892 37 H 0.179 0.821 38 H 0.095 0.905 39 H 0.245 0.755 40 H 0.195 0.805 41 H 0.087 0.913 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -10.305 3.671 -14.848 18.443 hybrid contribution 0.974 1.832 0.808 2.227 sum -9.331 5.503 -14.040 17.733 Atomic orbital electron populations 1.22228 0.93394 1.04051 1.02573 1.21324 0.95676 0.97500 0.82497 0.87118 1.23597 1.03210 0.94006 0.98507 0.89200 1.21660 1.02055 1.00338 0.95044 1.86766 1.76314 1.13171 1.27710 1.23726 1.04479 1.02679 0.92756 1.22906 1.00662 0.79102 1.03531 1.47818 1.44405 1.16028 1.23661 1.20324 0.79569 0.86970 0.83151 1.90722 1.62538 1.14723 1.72021 1.19617 0.82633 0.87666 0.83572 1.90334 1.61175 1.13775 1.74058 1.42182 1.44510 1.10667 1.24288 1.17247 1.11580 0.92215 0.96912 1.24146 1.03782 0.93052 0.98983 1.78277 1.15427 1.04231 1.11164 1.44583 1.26792 1.02927 1.15966 1.19945 1.26637 0.96288 1.02478 0.86377 1.25675 0.97448 0.94536 0.99485 1.70199 1.35233 0.98248 1.35544 0.85794 0.79403 0.78812 0.79991 1.19479 1.19994 1.18710 1.21314 1.09114 0.94231 0.98176 0.92017 0.90863 0.90390 0.90867 0.91402 0.90984 0.86507 0.89200 0.82117 0.90481 0.75501 0.80493 0.91274 0.83325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 8.37 37.16 0.31 -1.11 16 2 C 0.13 1.40 2.71 -67.88 -0.18 1.22 16 3 H 0.11 1.23 6.90 -51.93 -0.36 0.87 16 4 C -0.06 -0.61 3.08 -26.60 -0.08 -0.70 16 5 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 6 C -0.13 -0.96 8.80 37.16 0.33 -0.63 16 7 S -0.27 -2.82 20.28 -107.50 -2.18 -5.00 16 8 C -0.09 -0.96 6.65 37.01 0.25 -0.71 16 9 C 0.06 0.71 5.30 -4.25 -0.02 0.68 16 10 N -0.59 -7.26 2.57 -166.89 -0.43 -7.69 16 11 C 0.52 7.69 7.68 -11.65 -0.09 7.60 16 12 O -0.52 -8.44 15.83 5.48 0.09 -8.36 16 13 C 0.48 8.21 7.68 -11.65 -0.09 8.12 16 14 O -0.51 -9.29 10.29 5.45 0.06 -9.23 16 15 N -0.58 -10.31 5.45 -10.45 -0.06 -10.36 16 16 C -0.07 -1.62 6.90 -83.92 -0.58 -2.20 16 17 C -0.02 -0.59 10.85 -17.02 -0.18 -0.77 16 18 N -0.26 -7.22 10.39 30.81 0.32 -6.90 16 19 N -0.14 -3.60 3.73 -11.40 -0.04 -3.64 16 20 C -0.32 -8.20 10.25 -14.82 -0.15 -8.35 16 21 H 0.12 2.69 7.83 -52.49 -0.41 2.28 16 22 C 0.05 1.16 5.50 -17.50 -0.10 1.06 16 23 N -0.77 -20.65 11.81 55.50 0.66 -20.00 16 24 Si 0.94 18.30 29.55 -169.99 -5.02 13.27 16 25 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 26 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 27 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 28 C -0.08 -1.74 11.50 -16.37 -0.19 -1.93 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.51 6.39 -51.93 -0.33 0.17 16 31 H 0.08 0.70 5.85 -51.93 -0.30 0.40 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.48 6.40 -51.93 -0.33 0.15 16 35 H 0.12 1.12 8.14 -51.92 -0.42 0.70 16 36 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.16 2.20 4.17 -55.57 -0.23 1.97 16 38 H 0.08 0.79 6.94 -51.93 -0.36 0.43 16 39 H 0.41 6.37 8.31 -40.82 -0.34 6.03 16 40 H 0.18 4.16 5.92 -52.48 -0.31 3.85 16 41 H 0.28 6.81 8.31 -40.82 -0.34 6.47 16 42 H 0.15 2.83 8.06 -52.49 -0.42 2.41 16 LS Contribution 350.40 15.07 5.28 5.28 Total: -1.00 -30.24 350.40 -7.19 -37.43 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -5.07 Total: 12.92 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -0.78 Total: 2.28 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: 0.45 Total: -48.60 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: 0.14 Total: -17.59 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.02 Total: 13.27 kcal Atomic # 16 Polarization: -2.82 SS G_CDS: -2.18 Total: -5.00 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.24 -7.19 -37.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746410606.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.797 kcal (2) G-P(sol) polarization free energy of solvation -30.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds